mRNA_F-serratus_M_contig1437.3121.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1437.3121.1
Unique NamemRNA_F-serratus_M_contig1437.3121.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1437.3121.1 vs. uniprot
Match: A0A6H5JN15_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN15_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 3.040e-24
Identity = 64/141 (45.39%), Postives = 88/141 (62.41%), Query Frame = 1
Query:  133 LLLRHGAGVNALDSKGRTPLHLACIHGHLSVAIALLEHGADMGIIFTDDNNYEHCALSFAARMGHKDVMMALIKQGLDVNKANSRGLTALHNAAVRNQPRSIETLVENGADIEARA-RNAFGYTPLHGVARQAGRDGALEI 552
            LLLR GA V+ LD+KGRTP+HL+   G LS   ALL  G D  + +     +   AL  AAR GH +VM ALI+ G+DV+  +S GLTALH+AA  +   +IETL+E GA+I+A+   +   YTPLH  + +   + AL +
Sbjct:  100 LLLRDGAEVDVLDTKGRTPIHLSAKRGSLSAVQALLAAGGDSSLRYGKGEAFS--ALGLAARGGHVEVMQALIRHGVDVDAPDSNGLTALHSAATGDAVGAIETLMEAGANIDAQGGEDGARYTPLHMASEKGLSEAALSL 238          
BLAST of mRNA_F-serratus_M_contig1437.3121.1 vs. uniprot
Match: A0A6H5K1F4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1F4_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 9.720e-16
Identity = 59/164 (35.98%), Postives = 89/164 (54.27%), Query Frame = 1
Query:   91 LHLAVKLGSEPIVTLLLRHG-AGVNALDSKGRTPLHLACIHGHLSVAIALLEHGADMGIIFTDDNNYEHCALSFAARMGHKDVMMALIKQGLDVNKANSRGLTALHNAAVRNQPRSIETLVENGADIEARARNAF-GYTPLHGVARQAGRDGALEIADLLLRRG 576
            LHLA   G+  +V+ LL +    V+ALDS+G +PL +A   GH S   ALL  GADM +      +    A+  A   GH  V+ A+++ G +V   ++ GLTALH+A      ++++ L++ GAD+ A+A  A  G+TPL         D + E    LL+RG
Sbjct:  176 LHLAAASGNNRVVSTLLGNAMTDVDALDSRGVSPLMVASEGGHCSTVEALLRAGADMNLRHAGGAHLGMTAMDVAVSKGHVGVIEAIVENGGNVRATDTYGLTALHHAR---GAQAVDVLLDAGADVNAKACPALHGFTPLSVCVM----DNSCEAVVALLKRG 332          
BLAST of mRNA_F-serratus_M_contig1437.3121.1 vs. uniprot
Match: A0A8K0PCZ4_LADFU (Uncharacterized protein n=1 Tax=Ladona fulva TaxID=123851 RepID=A0A8K0PCZ4_LADFU)

HSP 1 Score: 73.9 bits (180), Expect = 2.370e-12
Identity = 57/163 (34.97%), Postives = 83/163 (50.92%), Query Frame = 1
Query:   91 LHLAVKLGSEPIVTLLLRHGAGVNALDSKGRTPLHLACIHGHLSVAIALLEH-GADMGIIFTDDNNYEHCALSFAARMGHKDVMMA---LIKQGLDVNKANSRGLTALHNAAVRNQPRSIETLVENGADIEARARNAFGYTPLHGVARQAGRDGALEIADLLL 567
            LHL  + G E +V  L+ HGA +NA DS+G+TPLH+A  + H S+   LL H G D+ I        +     FA+ M  K+   A   L K      + + RG   LH A  +    +I  L+  G D+ +R R+A   TPLH +A + G +  L + +LLL
Sbjct:  132 LHLCCQWGLEDVVRTLVEHGANINAKDSEGKTPLHVAIENSHHSITCLLLCHPGLDLSI------RDKSSLTPFASAMSCKNERAARAILDKMPTAAEQYDKRGRNFLHLAVEKGDLEAILFLLSVGVDLGSRVRDASQATPLH-LAAERGLE--LPLRNLLL 285          
BLAST of mRNA_F-serratus_M_contig1437.3121.1 vs. uniprot
Match: UPI001BD28EBB (ankyrin repeat domain-containing protein 61-like n=1 Tax=Cheilinus undulatus TaxID=241271 RepID=UPI001BD28EBB)

HSP 1 Score: 73.9 bits (180), Expect = 4.290e-12
Identity = 43/133 (32.33%), Postives = 72/133 (54.14%), Query Frame = 1
Query:   91 LHLAVKLGSEPIVTLLLRHGAGVNALDSKGRTPLHLACIHGHLSVAIALLEHGAD--MGIIFTDDNNYEHCALSFAARMG---HKDV--MMALIKQGLDVNKANSRGLTALHNAAVRNQPRSIETLVENGADI 468
            LHL+V+  + P V +L  +GA +NA+DS G TPLH+A    H  +  +L++ GAD  MG+  + +       ++ A +      +D+  +  L+KQG +V+  N  G T LH          ++ L+E+GA+I
Sbjct:  132 LHLSVRYAALPAVQILSSYGANINAVDSSGMTPLHMAAGMLHKDLIASLIKEGADVNMGVKHSGNTPLHLATVAMAMKTSKTLEEDISCLSELLKQGAEVDSVNKAGFTPLHEVCSMGSKELVDLLLEHGANI 264          
BLAST of mRNA_F-serratus_M_contig1437.3121.1 vs. uniprot
Match: UPI00147949A9 (rabankyrin-5 isoform X1 n=6 Tax=Megachilinae TaxID=156330 RepID=UPI00147949A9)

HSP 1 Score: 73.6 bits (179), Expect = 8.220e-12
Identity = 55/167 (32.93%), Postives = 85/167 (50.90%), Query Frame = 1
Query:   91 LHLAVKLGSEPIVTLLLRHGAGVNALD-SKGRTPLHLACIHGHLSVAIALLEHGADMGIIFTDDNNYEHCALSFAARMGHK---DVMMALIKQGLDVNKANSRGLTALHNAAVRNQPRSIETLVENGADIEARARNAFGYTPLH-GVARQAGRDGALEIADLLLRRG 576
            LH A K+GS  +   LL++G  V+ +  S G  P+H+A  + +  + + LL+   +        NN     LS A +   K   D+++ALIK G ++N+ N  GLT LH A ++    +   L+ENGAD+ AR  N  G  PL   V  + G     E+ + L +RG
Sbjct:  480 LHEACKVGSRNLTQALLKNGLPVDEVAFSTGDAPIHIAVSNLYFDIVVELLD-APNSNSQLNLKNNANETPLSIAIKAPFKKGKDIVLALIKAGANINEYNKEGLTLLHQAILKEDSATAIFLLENGADMNARTAN--GEAPLQLSVHCRLG-----EVVEALCKRG 638          
BLAST of mRNA_F-serratus_M_contig1437.3121.1 vs. uniprot
Match: A0A7N0UG32_KALFE (Potassium channel n=2 Tax=Kalanchoe fedtschenkoi TaxID=63787 RepID=A0A7N0UG32_KALFE)

HSP 1 Score: 72.4 bits (176), Expect = 1.990e-11
Identity = 49/146 (33.56%), Postives = 69/146 (47.26%), Query Frame = 1
Query:  112 GSEPIVTLLLRHGAGVNALDSKGRTPLHLACIHGHLSVAIALLEHGADMGIIFTDDNN-----------------YEHCALS----------FAARMGHKDVMMALIKQGLDVNKANSRGLTALHNAAVRNQPRSIETLVENGADI 468
            G+  ++T LL+ G   N +DSKGRTP+H+A   GH    +ALL++  ++ +   D N                  YEH AL            AA+     VM  L+KQGL VN  +  G+TA+  A  RN    +  LV NG +I
Sbjct:  588 GNGTLLTELLKAGLDPNVVDSKGRTPMHIAASEGHEDCVLALLKYACNLKLQDADGNTSLWDAISTKHHSIFHILYEHAALCDPCTAGNLLCTAAKRNDVIVMKELLKQGLCVNSKDQHGVTAIDIAKERNCVEILNLLVMNGVEI 733          
BLAST of mRNA_F-serratus_M_contig1437.3121.1 vs. uniprot
Match: A0A833VJZ4_9HYME (FYVE-type domain-containing protein n=2 Tax=Frieseomelitta varia TaxID=561572 RepID=A0A833VJZ4_9HYME)

HSP 1 Score: 72.0 bits (175), Expect = 2.720e-11
Identity = 54/167 (32.34%), Postives = 85/167 (50.90%), Query Frame = 1
Query:   91 LHLAVKLGSEPIVTLLLRHGAGVNALD-SKGRTPLHLACIHGHLSVAIALLEHGADMGIIFTDDNNYEHCALSFAARMGHK---DVMMALIKQGLDVNKANSRGLTALHNAAVRNQPRSIETLVENGADIEARARNAFGYTPLH-GVARQAGRDGALEIADLLLRRG 576
            LH   K+GS+ +   LL+ G  V+ +  S G  P+H+A  + +  + + LL+   +        NN     LS A +   K   D+++ALIK G ++N+ N+ GLT LH A ++    +   L+ENGAD+  R  N  G TPL   V  + G     E+ + L +RG
Sbjct:  270 LHEVCKVGSKNLTRALLKTGFPVDEVALSTGDAPIHIAVSNLYFDIVMELLD-APNSNTQLNLKNNANETPLSLAIKAPFKKGKDIVLALIKAGANINQCNNEGLTLLHQAILKEDSATAIFLLENGADMNTRTAN--GETPLQLSVHCRLG-----EVVEALCKRG 428          
BLAST of mRNA_F-serratus_M_contig1437.3121.1 vs. uniprot
Match: UPI0006C96FFD (transient receptor potential channel pyrexia-like n=1 Tax=Copidosoma floridanum TaxID=29053 RepID=UPI0006C96FFD)

HSP 1 Score: 71.6 bits (174), Expect = 3.670e-11
Identity = 51/147 (34.69%), Postives = 75/147 (51.02%), Query Frame = 1
Query:   91 LHLAVKLGSEPIVTLLLRHGAGVNALDSKGRTPLHLACIHGHLSVA--IALLEHGADMGIIFTDDNNYEHCALSFAARMGHKDVMMALIKQGLDVNKANSRGLTALHNAAVRNQPRSIETLVENGADIEARARNAFGYTPLHGVARQ 525
            LH AV+  SE +V LLL  GA V+A +SKG TPLH+AC+   L  A  I L   GA + +   D  +      +   +    +++  L+K G   N A+   LT LH AA+      ++ L+  GAD+ A   N  G T L+ + R+
Sbjct:  265 LHCAVRAKSEAVVKLLLDSGASVSAKNSKGETPLHVACLVQSLPCAEMILLQLGGAAVDVNALDQEHRTPLHNAVIDKSAVPELVELLLKHGAAPNVADRNKLTPLHIAALNELAECVDVLIWAGADVSA--TNRAGLTALNIILRK 409          
BLAST of mRNA_F-serratus_M_contig1437.3121.1 vs. uniprot
Match: A0A1S3Q5L7_SALSA (ankyrin repeat domain-containing protein 61 isoform X2 n=11 Tax=Salmonidae TaxID=8015 RepID=A0A1S3Q5L7_SALSA)

HSP 1 Score: 70.1 bits (170), Expect = 1.000e-10
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 1
Query:   91 LHLAVKLGSEPIVTLLLRHGAGVNALDSKGRTPLHLACIHGHLSVAIALLEHGADMGIIFTDDNNYE-HCALSFAARMGHKDV------MMALIKQGLDVNKANSRGLTALHNAAVRNQPRSIETLVENGADI 468
            LHLAV+ G+ P +++L  HGA +N +D  G  PLH+A    +  +  +L++ GAD+  +     N   H A   AA    K +      ++ L+ QG D N  N  G TALH A        +  L++ GADI
Sbjct:  150 LHLAVRYGALPAISILASHGAKINTIDHFGMMPLHMAAGILNTEMTASLIKLGADVNKVMNKSGNSPLHLAALAAANKPVKALGVDLGCIIELLDQGADPNTVNHAGRTALHEACSGGHEAVVALLLKYGADI 282          
BLAST of mRNA_F-serratus_M_contig1437.3121.1 vs. uniprot
Match: A0A1S3Q5G3_SALSA (ankyrin repeat domain-containing protein 61 isoform X1 n=6 Tax=Salmonidae TaxID=8015 RepID=A0A1S3Q5G3_SALSA)

HSP 1 Score: 70.1 bits (170), Expect = 1.050e-10
Identity = 45/133 (33.83%), Postives = 67/133 (50.38%), Query Frame = 1
Query:   91 LHLAVKLGSEPIVTLLLRHGAGVNALDSKGRTPLHLACIHGHLSVAIALLEHGADMGIIFTDDNNYE-HCALSFAARMGHKDV------MMALIKQGLDVNKANSRGLTALHNAAVRNQPRSIETLVENGADI 468
            LHLAV+ G+ P +++L  HGA +N +D  G  PLH+A    +  +  +L++ GAD+  +     N   H A   AA    K +      ++ L+ QG D N  N  G TALH A        +  L++ GADI
Sbjct:  181 LHLAVRYGALPAISILASHGAKINTIDHFGMMPLHMAAGILNTEMTASLIKLGADVNKVMNKSGNSPLHLAALAAANKPVKALGVDLGCIIELLDQGADPNTVNHAGRTALHEACSGGHEAVVALLLKYGADI 313          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1437.3121.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JN15_9PHAE3.040e-2445.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1F4_9PHAE9.720e-1635.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A8K0PCZ4_LADFU2.370e-1234.97Uncharacterized protein n=1 Tax=Ladona fulva TaxID... [more]
UPI001BD28EBB4.290e-1232.33ankyrin repeat domain-containing protein 61-like n... [more]
UPI00147949A98.220e-1232.93rabankyrin-5 isoform X1 n=6 Tax=Megachilinae TaxID... [more]
A0A7N0UG32_KALFE1.990e-1133.56Potassium channel n=2 Tax=Kalanchoe fedtschenkoi T... [more]
A0A833VJZ4_9HYME2.720e-1132.34FYVE-type domain-containing protein n=2 Tax=Friese... [more]
UPI0006C96FFD3.670e-1134.69transient receptor potential channel pyrexia-like ... [more]
A0A1S3Q5L7_SALSA1.000e-1033.83ankyrin repeat domain-containing protein 61 isofor... [more]
A0A1S3Q5G3_SALSA1.050e-1033.83ankyrin repeat domain-containing protein 61 isofor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1437contigF-serratus_M_contig1437:68355..69032 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score105.5
Seed ortholog evalue2.7e-20
Seed eggNOG ortholog2880.D7G6X8
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size576
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1437.3121.1prot_F-serratus_M_contig1437.3121.1Fucus serratus malepolypeptideF-serratus_M_contig1437 68361..69032 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.9957333-UTR-F-serratus_M_contig1437:68354..683601622929422.9957333-UTR-F-serratus_M_contig1437:68354..68360Fucus serratus maleUTRF-serratus_M_contig1437 68355..68360 +
1690962844.8436089-UTR-F-serratus_M_contig1437:68354..683601690962844.8436089-UTR-F-serratus_M_contig1437:68354..68360Fucus serratus maleUTRF-serratus_M_contig1437 68355..68360 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929423.007268-CDS-F-serratus_M_contig1437:68360..688311622929423.007268-CDS-F-serratus_M_contig1437:68360..68831Fucus serratus maleCDSF-serratus_M_contig1437 68361..68831 +
1690962844.8555512-CDS-F-serratus_M_contig1437:68360..688311690962844.8555512-CDS-F-serratus_M_contig1437:68360..68831Fucus serratus maleCDSF-serratus_M_contig1437 68361..68831 +
1622929423.0179105-CDS-F-serratus_M_contig1437:68933..690321622929423.0179105-CDS-F-serratus_M_contig1437:68933..69032Fucus serratus maleCDSF-serratus_M_contig1437 68934..69032 +
1690962844.8679237-CDS-F-serratus_M_contig1437:68933..690321690962844.8679237-CDS-F-serratus_M_contig1437:68933..69032Fucus serratus maleCDSF-serratus_M_contig1437 68934..69032 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1437.3121.1

>prot_F-serratus_M_contig1437.3121.1 ID=prot_F-serratus_M_contig1437.3121.1|Name=mRNA_F-serratus_M_contig1437.3121.1|organism=Fucus serratus male|type=polypeptide|length=190bp
MVGDTGFIQRLLLQREIFVGAKPKLMKDLHLAVKLGSEPIVTLLLRHGAG
VNALDSKGRTPLHLACIHGHLSVAIALLEHGADMGIIFTDDNNYEHCALS
FAARMGHKDVMMALIKQGLDVNKANSRGLTALHNAAVRNQPRSIETLVEN
GADIEARARNAFGYTPLHGVARQAGRDGALEIADLLLRRG
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mRNA from alignment at F-serratus_M_contig1437:68355..69032+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1437.3121.1 ID=mRNA_F-serratus_M_contig1437.3121.1|Name=mRNA_F-serratus_M_contig1437.3121.1|organism=Fucus serratus male|type=mRNA|length=678bp|location=Sequence derived from alignment at F-serratus_M_contig1437:68355..69032+ (Fucus serratus male)
GCCATCATGGTCGGAGATACGGGATTTATTCAACGCCTCCTGCTTCAGCG GGAAATCTTTGTCGGCGCGAAGCCCAAGTTGATGAAGGATCTCCACCTTG CAGTTAAGCTGGGCAGCGAGCCAATCGTGACGCTGCTGTTGAGACACGGA GCGGGGGTCAACGCCCTCGACAGCAAAGGGCGCACCCCGCTTCACCTGGC TTGCATACACGGCCACCTTTCCGTGGCAATCGCTCTCCTGGAACACGGTG CCGATATGGGCATCATATTCACCGATGATAACAATTACGAGCACTGCGCA CTGAGCTTCGCGGCTCGGATGGGCCACAAAGACGTAATGATGGCCTTGAT TAAGCAGGGGCTGGACGTGAACAAGGCAAATTCTCGGGGCTTGACCGCAC TTCACAACGCCGCGGTCCGAAACCAGCCGCGAAGCATCGAGACTCTGGTC GAGAACGGGGCCGACATCGAAGCCCGCGTTTCTGAGGCCGGAGGTGGGGG AACTGCCCTTCACGCATCTGCTGTGATGCGCTGCTACGATGCCACGGCGG CCCTCTTGAGGAACGGTGCCAGCGTTAAGGCGCGAAACGCGTTCGGGTAC ACCCCGCTGCACGGAGTTGCACGGCAGGCAGGGAGGGATGGCGCGCTCGA GATCGCCGACCTCTTGTTGAGACGGGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1437:68355..69032+

>mRNA_F-serratus_M_contig1437.3121.1 ID=mRNA_F-serratus_M_contig1437.3121.1|Name=mRNA_F-serratus_M_contig1437.3121.1|organism=Fucus serratus male|type=CDS|length=1140bp|location=Sequence derived from alignment at F-serratus_M_contig1437:68355..69032+ (Fucus serratus male)
ATGGTCGGAGATACGGGATTTATTCAACGCCTCCTGCTTCAGCGGGAAAT
CTTTGTCGGCGCGAAGCCCAAGTTGATGAAGGATCTCCACCTTGCAGTTA
AGCTGGGCAGCGAGCCAATCGTGACGCTGCTGTTGAGACACGGAGCGGGG
GTCAACGCCCTCGACAGCAAAGGGCGCACCCCGCTTCACCTGGCTTGCAT
ACACGGCCACCTTTCCGTGGCAATCGCTCTCCTGGAACACGGTGCCGATA
TGGGCATCATATTCACCGATGATAACAATTACGAGCACTGCGCACTGAGC
TTCGCGGCTCGGATGGGCCACAAAGACGTAATGATGGCCTTGATTAAGCA
GGGGCTGGACGTGAACAAGGCAAATTCTCGGGGCTTGACCGCACTTCACA
ACGCCGCGGTCCGAAACCAGCCGCGAAGCATCGAGACTCTGGTCGAGAAC
GGGGCCGACATCGAAGCCCGCATGGTCGGAGATACGGGATTTATTCAACG
CCTCCTGCTTCAGCGGGAAATCTTTGTCGGCGCGAAGCCCAAGTTGATGA
AGGATCTCCACCTTGCAGTTAAGCTGGGCAGCGAGCCAATCGTGACGCTG
CTGTTGAGACACGGAGCGGGGGTCAACGCCCTCGACAGCAAAGGGCGCAC
CCCGCTTCACCTGGCTTGCATACACGGCCACCTTTCCGTGGCAATCGCTC
TCCTGGAACACGGTGCCGATATGGGCATCATATTCACCGATGATAACAAT
TACGAGCACTGCGCACTGAGCTTCGCGGCTCGGATGGGCCACAAAGACGT
AATGATGGCCTTGATTAAGCAGGGGCTGGACGTGAACAAGGCAAATTCTC
GGGGCTTGACCGCACTTCACAACGCCGCGGTCCGAAACCAGCCGCGAAGC
ATCGAGACTCTGGTCGAGAACGGGGCCGACATCGAAGCCCGCGCGCGAAA
CGCGTTCGGGTACACCCCGCTGCACGGAGTTGCACGGCAGGCAGGGAGGG
ATGGCGCGCTCGAGATCGCCGACCTCTTGTTGAGACGGGGGGCGCGAAAC
GCGTTCGGGTACACCCCGCTGCACGGAGTTGCACGGCAGGCAGGGAGGGA
TGGCGCGCTCGAGATCGCCGACCTCTTGTTGAGACGGGGG
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