mRNA_F-serratus_M_contig1435.3118.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: D8LNL9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL9_ECTSI) HSP 1 Score: 132 bits (333), Expect = 1.230e-28 Identity = 113/316 (35.76%), Postives = 144/316 (45.57%), Query Frame = 2
Query: 2 RCSLALYYAAKANKPRTIRDLVELGANVDQRKSGGMTNLHLTAARGADDATEALLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRTRWLSRVTANKLHAGPPRKKAKRSLPTPPEKRPDKGLAVVPAPSERSRDRVPRSKTN------C----RRAKGVVGA--------------VLRLGRDSVLNENTPSDCMSIDGVLSDREARFTSRSVKEGSGNARFLGAVERLLLLQEEGVFREVVTY 877
RCSLALYYAAKANK TIRDLV+LGA+V+ +SGG TNLH TA RGA AT ALLR GANL+ +N FSQ TV+LLLRWGA ET N+ N D+VG E++L+ ++A+ PA++ +R AG P K P +R K + P + N C RR KG GA LRLGR S+L+E P+ + ++ RF AVERLLLL+EEGVFR++ +
Sbjct: 324 RCSLALYYAAKANKTDTIRDLVDLGADVNTTRSGGNTNLHCTATRGAYAATHALLRTGANLEIRNNXXXXXXXXXXXFSQSDTVQLLLRWGADETATNYDNLTAHDLVG------------HSVEEELLSNEAL------GPANK---KRXXXXXXXXXXXXXXXXXXSKAGAPSSSGKGKGQAPHSQRGGKRAGGARTEGSAAAGLSPSCRKNFSKDKLCYLFGRREKGAAGAGAAPTVGPTVVQPPQLRLGRGSLLSEGGPAAAGKVGAPGAEERPRFVV--------------AVERLLLLREEGVFRDICRF 604
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: A0A6H5K7S5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S5_9PHAE) HSP 1 Score: 120 bits (302), Expect = 1.040e-24 Identity = 120/385 (31.17%), Postives = 153/385 (39.74%), Query Frame = 2
Query: 2 RCSLALYYAAKANKPRTIRDLVELGANVDQRKSGGMTNLHLTAARGADDATEALLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRTRWLSRVTANKLHA----------------------------------------GPPRKKAKRSLPTPPEK-----------------------------------RPDKGLAVVPAPSERSRDRVPRSKTNC---RRAKGVVGA--------------VLRLGRDSVLNENTPSDCMSIDGVLSDREARFTSRSVKEGSGNARFLGAVERLLLLQEEGVFREVVTYL 880
RCSLALYYAAKANK TIRDLV+LGA+V+ +S G TNLH TA RGA AT+ALL+ ET N+ N D+VG ++ E + E K + D AIR ML +APADR+WRRR WLVLCR RWL+RV + GP K+ + R + +A +PS SR + K C RR GV GA LRLGR+S+L E P+ ++ V F+ AVERLLLL+EEGVFR++V++L
Sbjct: 326 RCSLALYYAAKANKTDTIRDLVDLGADVNTTRSAGNTNLHCTATRGAYAATQALLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETATNYDNLTAHDLVG--HSVEEELLSNEALVSKELVDTAIRSMLVNAPADRVWRRRGWLVLCRARWLARVAEKRKPLLAPVASACSGGGSXXXXXXXXXXXXXXXXXXXXXXVSSGKGPANKRRRAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRASGARTEGSVAAGLSPS--SRKNFSKDKLCCLFGRRENGVAGAGAAPTVGPGVVQPPQLRLGRESLLREGGPAAAGKVE--------------VPGAEERPGFVVAVERLLLLREEGVFRDIVSFL 692
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI) HSP 1 Score: 72.8 bits (177), Expect = 1.170e-9 Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 2
Query: 158 ALLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRT 475
ALL GA++ TPLH AC++S + V LLLRWGA E + + G+ P+D++G + + + EA+ + I +ML APADR WRRRSWLVL R+
Sbjct: 338 ALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSG-DVGSDHGDIEADGQR-----IHQMLARAPADRSWRRRSWLVLSRS 437
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 71.6 bits (174), Expect = 1.480e-9 Identity = 61/183 (33.33%), Postives = 83/183 (45.36%), Query Frame = 2
Query: 53 IRDLVELGANVDQRKSGGMTNLHLTAARGADDATEALLRAGANLKAISNVGDTPLHRAC---SFSQPST-------------------------------------VRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRD-DAIRRMLESAPADRIWRRRSWLVLCRTR 478
IR L+E GA+VD GG+ LH A +A + LLRAGAN +++S G T LH A + ++ +T V LLLRWGA ET +D +G PEE D++ + + +R++L +APADR WRRR LVLCR R
Sbjct: 176 IRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIG--------MKVPEE--DRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRAR 348
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: UPI001034D59B (ankyrin repeat domain-containing protein n=2 Tax=Hafniaceae TaxID=1903412 RepID=UPI001034D59B) HSP 1 Score: 66.6 bits (161), Expect = 2.060e-9 Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query: 80 NVDQRKSGGMTNLHLTAARGADDATEALLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDV 322
NVDQ+ T LH+ A G+ + E L+ GAN+ AI ++G+TPLH+A F Q ++ +LL+ A T+RN NQ P+DV
Sbjct: 27 NVDQKSIDDDTMLHMAARAGSIEDIETLISGGANIDAIGDLGNTPLHQAAMFGQLKSIVILLKLKAKTTIRNEFNQIPADV 107
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 2.280e-9 Identity = 58/161 (36.02%), Postives = 82/161 (50.93%), Query Frame = 2
Query: 14 ALYYAAKANKPRTIRDLVELGANVDQRKSGGMTNLHLTAARGADDATEALLRAGANLKAISNVGDTPL----HRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRTRWL 484
+L+ AA N+ I LVE GA+V+ T + +A AL + GAN++A G+TPL +A + V +LLR GA ET N + ++VVG + E A P +D + +R +LE+APADR WRRR LVLCR W+
Sbjct: 191 SLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGH---HIEYAACPLNKQDL----ERVRDLLENAPADRAWRRRGLLVLCRAFWI 344
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 4.280e-7 Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 2
Query: 209 TPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDA--IRRMLESAPADRIWRRRSWLVLCRT 475
TPLH AC S + V LLLRWGA +T+ + + +D VG + + +D ++ D R +L AP DR+WRRR WLVLCR+
Sbjct: 406 TPLHYACYKSNAAAVDLLLRWGADDTIVDGEGETAADEVGTWDPEVHSNEDDGSIDDDKLKADGQRTRLILACAPVDRLWRRRGWLVLCRS 496
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI) HSP 1 Score: 64.3 bits (155), Expect = 5.000e-7 Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = 2
Query: 14 ALYYAAKANKPRTIRDLVELGANVDQRKSGGMTNLHLTAARGAD-DATEALLRAGANLKAISNVGDTPLHRACSFSQP---STVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRTR 478
AL+ N+ + L++ GA++D++ G T L + GA A LLR G + + T LH AC P + V LLLRWG E + G P+ ++ A ++ A E E V +L +APADR WRRRSWLV+ R R
Sbjct: 272 ALHAGCAMNQAGAMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVS--GPMDKTMLHLACMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSRKA--REVERAHV-------LLANAPADRAWRRRSWLVMLRAR 419
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: A0A6H5L7V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V4_9PHAE) HSP 1 Score: 60.5 bits (145), Expect = 5.370e-7 Identity = 41/105 (39.05%), Postives = 54/105 (51.43%), Query Frame = 2
Query: 161 LLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRT 475
LL+ GA++ + G T LH AC +P V LLLRWGA ETV + P A A+ E E+ + ++L AP DR WRRR +LV+CRT
Sbjct: 4 LLQLGADVHVRDSTGATSLHMACYDVEPEAVDLLLRWGADETVVDDEGHTPYSYHFPAGADE-----AEWDEENRRTYKRLSKLLTHAPQDRSWRRRGFLVMCRT 103
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: A0A6H5JT17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT17_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 6.650e-7 Identity = 54/164 (32.93%), Postives = 79/164 (48.17%), Query Frame = 2
Query: 17 LYYAAKANKPRTIRDLVELGAN--------VDQRKSGGMTNLHLTAARGADDATEALLRAGANLKAISNVGDTPLHRACSFS-QPSTVR---LLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCR 472
LY+A + + P R L++ GA + S G+T LH+ A + ALLR+GAN+ A ++ G TPLH C S P +V+ LLL W A ET + + P +V ++ +R+ L +APADR+WR R LV+CR
Sbjct: 202 LYFALRRS-PAMTRALLQHGAASFEPYHGVCGKHSSVGLTPLHVAAYYHRSLSMAALLRSGANVDAEADNGLTPLHMVCKTSLAPGSVKANDLLLSWDADETTTDHDGRTPKALVSGRSSLRW----------------RVRQKLANAPADRLWRSRGMLVMCR 348 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1435.3118.1 >prot_F-serratus_M_contig1435.3118.1 ID=prot_F-serratus_M_contig1435.3118.1|Name=mRNA_F-serratus_M_contig1435.3118.1|organism=Fucus serratus male|type=polypeptide|length=259bp MTNLHLTAARGADDATEALLRAGANLKAISNVGDTPLHRACSFSQPSTVRback to top mRNA from alignment at F-serratus_M_contig1435:185611..188075+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1435.3118.1 ID=mRNA_F-serratus_M_contig1435.3118.1|Name=mRNA_F-serratus_M_contig1435.3118.1|organism=Fucus serratus male|type=mRNA|length=2465bp|location=Sequence derived from alignment at F-serratus_M_contig1435:185611..188075+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1435:185611..188075+ >mRNA_F-serratus_M_contig1435.3118.1 ID=mRNA_F-serratus_M_contig1435.3118.1|Name=mRNA_F-serratus_M_contig1435.3118.1|organism=Fucus serratus male|type=CDS|length=1554bp|location=Sequence derived from alignment at F-serratus_M_contig1435:185611..188075+ (Fucus serratus male)back to top |