mRNA_F-serratus_M_contig1435.3118.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1435.3118.1
Unique NamemRNA_F-serratus_M_contig1435.3118.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: D8LNL9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL9_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 1.230e-28
Identity = 113/316 (35.76%), Postives = 144/316 (45.57%), Query Frame = 2
Query:    2 RCSLALYYAAKANKPRTIRDLVELGANVDQRKSGGMTNLHLTAARGADDATEALLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRTRWLSRVTANKLHAGPPRKKAKRSLPTPPEKRPDKGLAVVPAPSERSRDRVPRSKTN------C----RRAKGVVGA--------------VLRLGRDSVLNENTPSDCMSIDGVLSDREARFTSRSVKEGSGNARFLGAVERLLLLQEEGVFREVVTY 877
            RCSLALYYAAKANK  TIRDLV+LGA+V+  +SGG TNLH TA RGA  AT ALLR GANL+  +N           FSQ  TV+LLLRWGA ET  N+ N    D+VG               E++L+ ++A+       PA++   +R                    AG P    K     P  +R  K           +    P  + N      C    RR KG  GA               LRLGR S+L+E  P+    +    ++   RF                AVERLLLL+EEGVFR++  +
Sbjct:  324 RCSLALYYAAKANKTDTIRDLVDLGADVNTTRSGGNTNLHCTATRGAYAATHALLRTGANLEIRNNXXXXXXXXXXXFSQSDTVQLLLRWGADETATNYDNLTAHDLVG------------HSVEEELLSNEAL------GPANK---KRXXXXXXXXXXXXXXXXXXSKAGAPSSSGKGKGQAPHSQRGGKRAGGARTEGSAAAGLSPSCRKNFSKDKLCYLFGRREKGAAGAGAAPTVGPTVVQPPQLRLGRGSLLSEGGPAAAGKVGAPGAEERPRFVV--------------AVERLLLLREEGVFRDICRF 604          
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: A0A6H5K7S5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S5_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 1.040e-24
Identity = 120/385 (31.17%), Postives = 153/385 (39.74%), Query Frame = 2
Query:    2 RCSLALYYAAKANKPRTIRDLVELGANVDQRKSGGMTNLHLTAARGADDATEALLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRTRWLSRVTANKLHA----------------------------------------GPPRKKAKRSLPTPPEK-----------------------------------RPDKGLAVVPAPSERSRDRVPRSKTNC---RRAKGVVGA--------------VLRLGRDSVLNENTPSDCMSIDGVLSDREARFTSRSVKEGSGNARFLGAVERLLLLQEEGVFREVVTYL 880
            RCSLALYYAAKANK  TIRDLV+LGA+V+  +S G TNLH TA RGA  AT+ALL+                                     ET  N+ N    D+VG  ++  E   + E    K + D AIR ML +APADR+WRRR WLVLCR RWL+RV   +                                           GP  K+ +                                            R +  +A   +PS  SR    + K  C   RR  GV GA               LRLGR+S+L E  P+    ++              V        F+ AVERLLLL+EEGVFR++V++L
Sbjct:  326 RCSLALYYAAKANKTDTIRDLVDLGADVNTTRSAGNTNLHCTATRGAYAATQALLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETATNYDNLTAHDLVG--HSVEEELLSNEALVSKELVDTAIRSMLVNAPADRVWRRRGWLVLCRARWLARVAEKRKPLLAPVASACSGGGSXXXXXXXXXXXXXXXXXXXXXXVSSGKGPANKRRRAKAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRASGARTEGSVAAGLSPS--SRKNFSKDKLCCLFGRRENGVAGAGAAPTVGPGVVQPPQLRLGRESLLREGGPAAAGKVE--------------VPGAEERPGFVVAVERLLLLREEGVFRDIVSFL 692          
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI)

HSP 1 Score: 72.8 bits (177), Expect = 1.170e-9
Identity = 45/106 (42.45%), Postives = 63/106 (59.43%), Query Frame = 2
Query:  158 ALLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRT 475
            ALL  GA++        TPLH AC++S  + V LLLRWGA E + + G+  P+D++G +  +  +     EA+ +      I +ML  APADR WRRRSWLVL R+
Sbjct:  338 ALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSG-DVGSDHGDIEADGQR-----IHQMLARAPADRSWRRRSWLVLSRS 437          
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.480e-9
Identity = 61/183 (33.33%), Postives = 83/183 (45.36%), Query Frame = 2
Query:   53 IRDLVELGANVDQRKSGGMTNLHLTAARGADDATEALLRAGANLKAISNVGDTPLHRAC---SFSQPST-------------------------------------VRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRD-DAIRRMLESAPADRIWRRRSWLVLCRTR 478
            IR L+E GA+VD    GG+  LH   A    +A + LLRAGAN +++S  G T LH A    + ++ +T                                     V LLLRWGA ET         +D +G           PEE  D++  + + +R++L +APADR WRRR  LVLCR R
Sbjct:  176 IRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIG--------MKVPEE--DRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRAR 348          
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: UPI001034D59B (ankyrin repeat domain-containing protein n=2 Tax=Hafniaceae TaxID=1903412 RepID=UPI001034D59B)

HSP 1 Score: 66.6 bits (161), Expect = 2.060e-9
Identity = 35/81 (43.21%), Postives = 51/81 (62.96%), Query Frame = 2
Query:   80 NVDQRKSGGMTNLHLTAARGADDATEALLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDV 322
            NVDQ+     T LH+ A  G+ +  E L+  GAN+ AI ++G+TPLH+A  F Q  ++ +LL+  A  T+RN  NQ P+DV
Sbjct:   27 NVDQKSIDDDTMLHMAARAGSIEDIETLISGGANIDAIGDLGNTPLHQAAMFGQLKSIVILLKLKAKTTIRNEFNQIPADV 107          
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.280e-9
Identity = 58/161 (36.02%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   14 ALYYAAKANKPRTIRDLVELGANVDQRKSGGMTNLHLTAARGADDATEALLRAGANLKAISNVGDTPL----HRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRTRWL 484
            +L+ AA  N+   I  LVE GA+V+       T      +    +A  AL + GAN++A    G+TPL     +A      + V +LLR GA ET  N   +  ++VVG    + E  A P   +D     + +R +LE+APADR WRRR  LVLCR  W+
Sbjct:  191 SLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGH---HIEYAACPLNKQDL----ERVRDLLENAPADRAWRRRGLLVLCRAFWI 344          
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 4.280e-7
Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 2
Query:  209 TPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDA--IRRMLESAPADRIWRRRSWLVLCRT 475
            TPLH AC  S  + V LLLRWGA +T+ +   +  +D VG  +    +       +D  ++ D    R +L  AP DR+WRRR WLVLCR+
Sbjct:  406 TPLHYACYKSNAAAVDLLLRWGADDTIVDGEGETAADEVGTWDPEVHSNEDDGSIDDDKLKADGQRTRLILACAPVDRLWRRRGWLVLCRS 496          
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI)

HSP 1 Score: 64.3 bits (155), Expect = 5.000e-7
Identity = 54/159 (33.96%), Postives = 76/159 (47.80%), Query Frame = 2
Query:   14 ALYYAAKANKPRTIRDLVELGANVDQRKSGGMTNLHLTAARGAD-DATEALLRAGANLKAISNVGDTPLHRACSFSQP---STVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRTR 478
            AL+     N+   +  L++ GA++D++  G  T L +    GA   A   LLR G  +     +  T LH AC    P   + V LLLRWG  E   + G   P+ ++  A  ++   A   E E   V       +L +APADR WRRRSWLV+ R R
Sbjct:  272 ALHAGCAMNQAGAMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVS--GPMDKTMLHLACMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSRKA--REVERAHV-------LLANAPADRAWRRRSWLVMLRAR 419          
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: A0A6H5L7V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V4_9PHAE)

HSP 1 Score: 60.5 bits (145), Expect = 5.370e-7
Identity = 41/105 (39.05%), Postives = 54/105 (51.43%), Query Frame = 2
Query:  161 LLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRT 475
            LL+ GA++    + G T LH AC   +P  V LLLRWGA ETV +     P      A A+       E  E+       + ++L  AP DR WRRR +LV+CRT
Sbjct:    4 LLQLGADVHVRDSTGATSLHMACYDVEPEAVDLLLRWGADETVVDDEGHTPYSYHFPAGADE-----AEWDEENRRTYKRLSKLLTHAPQDRSWRRRGFLVMCRT 103          
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Match: A0A6H5JT17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT17_9PHAE)

HSP 1 Score: 63.5 bits (153), Expect = 6.650e-7
Identity = 54/164 (32.93%), Postives = 79/164 (48.17%), Query Frame = 2
Query:   17 LYYAAKANKPRTIRDLVELGAN--------VDQRKSGGMTNLHLTAARGADDATEALLRAGANLKAISNVGDTPLHRACSFS-QPSTVR---LLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCR 472
            LY+A + + P   R L++ GA           +  S G+T LH+ A      +  ALLR+GAN+ A ++ G TPLH  C  S  P +V+   LLL W A ET  +   + P  +V   ++                    +R+ L +APADR+WR R  LV+CR
Sbjct:  202 LYFALRRS-PAMTRALLQHGAASFEPYHGVCGKHSSVGLTPLHVAAYYHRSLSMAALLRSGANVDAEADNGLTPLHMVCKTSLAPGSVKANDLLLSWDADETTTDHDGRTPKALVSGRSSLRW----------------RVRQKLANAPADRLWRSRGMLVMCR 348          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1435.3118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D8LNL9_ECTSI1.230e-2835.76Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5K7S5_9PHAE1.040e-2431.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LD22_ECTSI1.170e-942.45MHC_I C-terminus family protein n=1 Tax=Ectocarpus... [more]
D7FKL4_ECTSI1.480e-933.33Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
UPI001034D59B2.060e-943.21ankyrin repeat domain-containing protein n=2 Tax=H... [more]
A0A6H5KNU3_9PHAE2.280e-936.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G692_ECTSI4.280e-740.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LBP9_ECTSI5.000e-733.96Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A6H5L7V4_9PHAE5.370e-739.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT17_9PHAE6.650e-732.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1435contigF-serratus_M_contig1435:185611..188075 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.5
Seed ortholog evalue4e-14
Seed eggNOG ortholog2880.D8LB27
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
GOsGO:0001508,GO:0002027,GO:0002262,GO:0002376,GO:0002520,GO:0003008,GO:0003012,GO:0003013,GO:0003015,GO:0003205,GO:0003230,GO:0003279,GO:0003283,GO:0003674,GO:0005198,GO:0005200,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005829,GO:0005856,GO:0005886,GO:0005911,GO:0005938,GO:0006725,GO:0006778,GO:0006779,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006887,GO:0006888,GO:0006928,GO:0006936,GO:0006937,GO:0006941,GO:0006942,GO:0006996,GO:0007009,GO:0007010,GO:0007154,GO:0007163,GO:0007165,GO:0007267,GO:0007275,GO:0007507,GO:0008015,GO:0008016,GO:0008092,GO:0008093,GO:0008104,GO:0008150,GO:0008152,GO:0009058,GO:0009893,GO:0009987,GO:0010256,GO:0010468,GO:0010522,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010880,GO:0010881,GO:0010882,GO:0010959,GO:0012505,GO:0014704,GO:0014731,GO:0015672,GO:0016020,GO:0016043,GO:0016192,GO:0016323,GO:0016528,GO:0016529,GO:0018130,GO:0019222,GO:0019438,GO:0019722,GO:0019725,GO:0019899,GO:0019900,GO:0019901,GO:0019932,GO:0022898,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030011,GO:0030016,GO:0030017,GO:0030018,GO:0030029,GO:0030048,GO:0030054,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0030315,GO:0030424,GO:0030507,GO:0030673,GO:0030674,GO:0030863,GO:0031252,GO:0031253,GO:0031256,GO:0031430,GO:0031647,GO:0031672,GO:0031674,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032589,GO:0032879,GO:0032940,GO:0032970,GO:0033013,GO:0033014,GO:0033036,GO:0033043,GO:0033267,GO:0033292,GO:0033365,GO:0034101,GO:0034394,GO:0034613,GO:0034641,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0035088,GO:0035090,GO:0035556,GO:0035637,GO:0036309,GO:0036371,GO:0042383,GO:0042391,GO:0042592,GO:0042692,GO:0042995,GO:0043005,GO:0043034,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043266,GO:0043268,GO:0043269,GO:0043270,GO:0043292,GO:0044057,GO:0044093,GO:0044237,GO:0044249,GO:0044271,GO:0044291,GO:0044304,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044444,GO:0044448,GO:0044449,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045197,GO:0045199,GO:0045202,GO:0045211,GO:0046483,GO:0046903,GO:0046907,GO:0048193,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048534,GO:0048731,GO:0048821,GO:0048856,GO:0048869,GO:0048872,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050821,GO:0050896,GO:0051049,GO:0051050,GO:0051117,GO:0051128,GO:0051130,GO:0051179,GO:0051186,GO:0051188,GO:0051234,GO:0051239,GO:0051270,GO:0051279,GO:0051282,GO:0051641,GO:0051649,GO:0051716,GO:0051899,GO:0051924,GO:0051928,GO:0055001,GO:0055065,GO:0055072,GO:0055074,GO:0055076,GO:0055080,GO:0055082,GO:0055117,GO:0060047,GO:0060048,GO:0060090,GO:0060255,GO:0060306,GO:0060307,GO:0060341,GO:0061024,GO:0061061,GO:0061245,GO:0061337,GO:0061515,GO:0065007,GO:0065008,GO:0065009,GO:0070252,GO:0070296,GO:0070727,GO:0070838,GO:0070972,GO:0071704,GO:0071840,GO:0071944,GO:0072359,GO:0072503,GO:0072507,GO:0072511,GO:0072657,GO:0072659,GO:0086001,GO:0086002,GO:0086003,GO:0086004,GO:0086005,GO:0086010,GO:0086012,GO:0086014,GO:0086015,GO:0086018,GO:0086019,GO:0086026,GO:0086046,GO:0086065,GO:0086066,GO:0086070,GO:0086091,GO:0090257,GO:0097060,GO:0097458,GO:0098590,GO:0098771,GO:0098794,GO:0098900,GO:0098901,GO:0098907,GO:0098910,GO:0099080,GO:0099081,GO:0099512,GO:0099568,GO:0099623,GO:0120025,GO:0120038,GO:1901016,GO:1901018,GO:1901019,GO:1901021,GO:1901360,GO:1901362,GO:1901379,GO:1901381,GO:1901564,GO:1901566,GO:1901576,GO:1903115,GO:1903169,GO:1903522,GO:1903779,GO:1904062,GO:1904064,GO:1904427,GO:1990778,GO:2001257,GO:2001259
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size2142
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1435.3118.1prot_F-serratus_M_contig1435.3118.1Fucus serratus malepolypeptideF-serratus_M_contig1435 185717..186493 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.4238625-UTR-F-serratus_M_contig1435:185610..1857161622929422.4238625-UTR-F-serratus_M_contig1435:185610..185716Fucus serratus maleUTRF-serratus_M_contig1435 185611..185716 +
1690962844.7100224-UTR-F-serratus_M_contig1435:185610..1857161690962844.7100224-UTR-F-serratus_M_contig1435:185610..185716Fucus serratus maleUTRF-serratus_M_contig1435 185611..185716 +
1622929422.4438128-UTR-F-serratus_M_contig1435:186493..1864951622929422.4438128-UTR-F-serratus_M_contig1435:186493..186495Fucus serratus maleUTRF-serratus_M_contig1435 186494..186495 +
1690962844.7330203-UTR-F-serratus_M_contig1435:186493..1864951690962844.7330203-UTR-F-serratus_M_contig1435:186493..186495Fucus serratus maleUTRF-serratus_M_contig1435 186494..186495 +
1622929422.4544322-UTR-F-serratus_M_contig1435:186818..1880751622929422.4544322-UTR-F-serratus_M_contig1435:186818..188075Fucus serratus maleUTRF-serratus_M_contig1435 186819..188075 +
1690962844.740522-UTR-F-serratus_M_contig1435:186818..1880751690962844.740522-UTR-F-serratus_M_contig1435:186818..188075Fucus serratus maleUTRF-serratus_M_contig1435 186819..188075 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.4332175-CDS-F-serratus_M_contig1435:185716..1864931622929422.4332175-CDS-F-serratus_M_contig1435:185716..186493Fucus serratus maleCDSF-serratus_M_contig1435 185717..186493 +
1690962844.7253375-CDS-F-serratus_M_contig1435:185716..1864931690962844.7253375-CDS-F-serratus_M_contig1435:185716..186493Fucus serratus maleCDSF-serratus_M_contig1435 185717..186493 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1435.3118.1

>prot_F-serratus_M_contig1435.3118.1 ID=prot_F-serratus_M_contig1435.3118.1|Name=mRNA_F-serratus_M_contig1435.3118.1|organism=Fucus serratus male|type=polypeptide|length=259bp
MTNLHLTAARGADDATEALLRAGANLKAISNVGDTPLHRACSFSQPSTVR
LLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIR
RMLESAPADRIWRRRSWLVLCRTRWLSRVTANKLHAGPPRKKAKRSLPTP
PEKRPDKGLAVVPAPSERSRDRVPRSKTNCRRAKGVVGAVLRLGRDSVLN
ENTPSDCMSIDGVLSDREARFTSRSVKEGSGNARFLGAVERLLLLQEEGV
FREVVTYL*
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mRNA from alignment at F-serratus_M_contig1435:185611..188075+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1435.3118.1 ID=mRNA_F-serratus_M_contig1435.3118.1|Name=mRNA_F-serratus_M_contig1435.3118.1|organism=Fucus serratus male|type=mRNA|length=2465bp|location=Sequence derived from alignment at F-serratus_M_contig1435:185611..188075+ (Fucus serratus male)
CAGGTGTAGCCTTGCCCTCTACTACGCCGCGAAGGCCAACAAACCTCGCA CGATCCGTGACCTCGTGGAGCTAGGGGCGAACGTGGACCAGCGCAAGTCG GGCGGCATGACAAACCTCCATCTGACGGCTGCCAGAGGGGCGGACGACGC TACCGAGGCCCTGTTGCGAGCGGGCGCAAACCTGAAGGCCATTAGTAACG TGGGGGATACTCCGCTGCACCGCGCGTGTAGCTTCTCGCAGCCGAGCACG GTCCGACTCCTGCTCCGTTGGGGCGCGGTGGAAACTGTAAGGAACTTCGG AAACCAGGCACCGTCCGATGTGGTGGGCGCCGCGAATGCGAACACAGAGG CGACCGCTGCGCCCGAAGAGGCCGAGGACAAGCTTGTGCGGGACGACGCC ATCCGACGGATGCTCGAAAGCGCCCCGGCTGATCGCATCTGGCGGCGGCG GAGCTGGCTCGTGTTATGCCGTACGCGTTGGCTGTCGAGGGTTACGGCCA ATAAACTTCATGCGGGTCCGCCTCGCAAGAAAGCTAAGCGCTCGCTCCCG ACTCCGCCCGAGAAACGGCCTGACAAGGGCTTGGCGGTGGTACCTGCTCC CTCCGAGCGCTCGCGTGATCGTGTTCCTCGGAGCAAGACCAATTGTCGGC GTGCGAAGGGAGTGGTGGGAGCGGTGTTGAGGCTCGGGCGCGACAGCGTA TTGAATGAAAACACGCCTAGCGACTGTATGTCTATCGACGGCGTGTTGAG CGATCGGGAGGCGAGGTTTACATCGAGATCGGTCAAGGAGGGGTCAGGGA ACGCCCGCTTCTTGGGTGCGGTGGAGCGGCTTCTGCTACTGCAAGAAGAA GGCGTTTTTAGAGAGGTGGTGACGTACTTGTGAATGTGAGGCCCACGCTC TGGTACATAAGCCTAGCCTAAACACGGACCTCCGATATTTACCAATAGTC GCCGCTATCGCGTCTCCGACATGTGCGCTTGTGTTCATCTCGGCCAAAGT TGTTCTTGCGGAAAAACTCCACTCAACGGGTAGCGCGAGTCCCTCCGTCG GGGTAAAAGGGTCGATCAAGGCGGCATTGGAACCCGATGGTTGAAAAATT GACCACGTTTTGGTAGACTTTACAAAACCTGAAAATATTTATATCTTTAC TGTACACCTTTGCGTGCTTGTCAATTATGATGCTCTCGATGACACCCTCA ATGAGCAGTGAGCAAGCGGAGCAAGGCAAGCTGTACGGTCGTTGTTTGGT TCTTTCAAGTCTTCCACATCGCGGAATGCTTGTGCTTCAAGAGGACTACG GCGCGCATAGCACTTACGGTCGCGCTTGATCTGATTTGATCGTAGGCCTG GCCTTTGCAGACTTGATCGGTGATTGGGACGTACATACAGTCTGCTGCGT CGTGGTCAACAGAAAAAAGGCCCCGTGTGCACTGCTGCCTCAAGAAAAAC TGCTGTAGATCACCTCGGGTGCATTATGGCGTGCCGCAACATTGTAGGAG ACTGTGATTCCATGTCGGAGACACCGATCGCGCTTCCCTCGACCCGGCAC CGTCCGTGATTTCGGATCGTTGGTTCATTATTTCCGCCGTCAAGAGAGGA TTACTGGCGGAAGCGACGCTCTCCTCCCTACTAGTAGGCACGAGTCCGCC CTTGGTGATTCCTCCCCGCAGCGTACTGAGACAGACGTGCGACGTGGGAC GTGGAGATCTCGAGCCACCGCACATACGTGGGGAAGCCAACACCATCGCG CAAGAAGCCATTTATGTTCGTAAACTAGAGCTGAGAGAGAGAAGCGCTGG GTGTCTCCAGACCTTGGTCATGGAAAAATAGGGCATTATTTCACGGTAAT ACTTGCACGAGGGGTCGAGGGATTGTAGATATGAATGTGTACTGTAGGAG TTGTACGATACATGCACTCGCATTCACTTGCAGCTGCTGCACTGTGGGTA TCACGGAAGACGTATTTGAAAGCCGTACGTACGTGATCCCCTGCTGCGTG TAACTGTGATGATAACAACGAAAAGCTTCGTGGGACGAGGATGATTTGTT CGCGGCTGTTTCAGTTGCGTGTATGATGGTCCCTACACAAGGGCGGACCT CGAAGGGCGCACGCAGAGACGGACCGACCGCCAGGAGACCGGGCTCGCTC TCGCAAGGTCTACGTGCCGTATCTGGCGACCTTCCGGTTTCCCTCTGATA AAATATACTGGTACTTGAATGCAGTAGACGAGTGCAGACTGAGGGAAAGC CGCCCCTGATGGGCACTTCGGGGTGCGTGGGATTCAAGACCGGCATAATC AAACACCGTAGAATGGAGCCATTCTCAGAGTTGTCGGCGGCGGCCTGAAA GTGCAAGAGAGCGCATGAAAATATCTTCTTGCGATCGTTGAAGGAGAGCT GTTGCAGAAGAGGAGTTCTACTCCATACCCACCGTGCCACTACTGCCTTC CAGCATCGGTTCTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1435:185611..188075+

>mRNA_F-serratus_M_contig1435.3118.1 ID=mRNA_F-serratus_M_contig1435.3118.1|Name=mRNA_F-serratus_M_contig1435.3118.1|organism=Fucus serratus male|type=CDS|length=1554bp|location=Sequence derived from alignment at F-serratus_M_contig1435:185611..188075+ (Fucus serratus male)
ATGACAAACCTCCATCTGACGGCTGCCAGAGGGGCGGACGACGCTACCGA
GGCCCTGTTGCGAGCGGGCGCAAACCTGAAGGCCATTAGTAACGTGGGGG
ATACTCCGCTGCACCGCGCGTGTAGCTTCTCGCAGCCGAGCACGGTCCGA
CTCCTGCTCCGTTGGGGCGCGGTGGAAACTGTAAGGAACTTCGGAAACCA
GGCACCGTCCGATGTGGTGGGCGCCGCGAATGCGAACACAGAGGCGACCG
CTGCGCCCGAAGAGGCCGAGGACAAGCTTGTGCGGGACGACGCCATCCGA
CGGATGCTCGAAAGCGCCCCGGCTGATCGCATCTGGCGGCGGCGGAGCTG
GCTCGTGTTATGCCGTACGCGTTGGCTGTCGAGGGTTACGGCCAATAAAC
TTCATGCGGGTCCGCCTCGCAAGAAAGCTAAGCGCTCGCTCCCGACTCCG
CCCGAGAAACGGCCTGACAAGGGCTTGGCGGTGGTACCTGCTCCCTCCGA
GCGCTCGCGTGATCGTGTTCCTCGGAGCAAGACCAATTGTCGGCGTGCGA
AGGGAGTGGTGGGAGCGGTGTTGAGGCTCGGGCGCGACAGCGTATTGAAT
GAAAACACGCCTAGCGACTGTATGTCTATCGACGGCGTGTTGAGCGATCG
GGAGGCGAGGTTTACATCGAGATCGGTCAAGGAGGGGTCAGGGAACGCCC
GCTTCTTGGGTGCGGTGGAGCGGCTTCTGCTACTGCAAGAAGAAGGCGTT
TTTAGAGAGGTGGTGACGTACTTGTGAATGACAAACCTCCATCTGACGGC
TGCCAGAGGGGCGGACGACGCTACCGAGGCCCTGTTGCGAGCGGGCGCAA
ACCTGAAGGCCATTAGTAACGTGGGGGATACTCCGCTGCACCGCGCGTGT
AGCTTCTCGCAGCCGAGCACGGTCCGACTCCTGCTCCGTTGGGGCGCGGT
GGAAACTGTAAGGAACTTCGGAAACCAGGCACCGTCCGATGTGGTGGGCG
CCGCGAATGCGAACACAGAGGCGACCGCTGCGCCCGAAGAGGCCGAGGAC
AAGCTTGTGCGGGACGACGCCATCCGACGGATGCTCGAAAGCGCCCCGGC
TGATCGCATCTGGCGGCGGCGGAGCTGGCTCGTGTTATGCCGTACGCGTT
GGCTGTCGAGGGTTACGGCCAATAAACTTCATGCGGGTCCGCCTCGCAAG
AAAGCTAAGCGCTCGCTCCCGACTCCGCCCGAGAAACGGCCTGACAAGGG
CTTGGCGGTGGTACCTGCTCCCTCCGAGCGCTCGCGTGATCGTGTTCCTC
GGAGCAAGACCAATTGTCGGCGTGCGAAGGGAGTGGTGGGAGCGGTGTTG
AGGCTCGGGCGCGACAGCGTATTGAATGAAAACACGCCTAGCGACTGTAT
GTCTATCGACGGCGTGTTGAGCGATCGGGAGGCGAGGTTTACATCGAGAT
CGGTCAAGGAGGGGTCAGGGAACGCCCGCTTCTTGGGTGCGGTGGAGCGG
CTTCTGCTACTGCAAGAAGAAGGCGTTTTTAGAGAGGTGGTGACGTACTT
GTGA
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