mRNA_F-serratus_M_contig1435.3115.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1435.3115.1
Unique NamemRNA_F-serratus_M_contig1435.3115.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1435.3115.1 vs. uniprot
Match: D8LNM3_ECTSI (Phosphoribosylaminoimidazole carboxylase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNM3_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 1.530e-119
Identity = 217/322 (67.39%), Postives = 237/322 (73.60%), Query Frame = 2 
Query:  122 STFRLARRCLCAKPTSDLQALLNRVAAGELPPSVAASQLSPLLVAGGAQAEDVGGFAKIDHQRRLRVGFPEVVFGEGKSASQIVDILTAMIKEHSASGAGS---------------------------SPIVATRVSAEKWADISVDLQG-LRYHAEARVVAFGGPPPLAERPPTPSTSRGFQGSSSVGKVAVMSAGTSDLAVAEEAALLAELAGAEVVRLHDVGVAGIHRLLGVIPVVEQAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKSSKAA 1003
            +T  L+      +   DL ALL RVAAG+L P+ AASQL+PLLV+GGAQAEDVGGFAKIDH RR RVGFPEVVFG+GKSA QI DIL AMI+E  A    +                           SP+VATRVS EKW  IS  L G L YHA+AR+V+FG PP         +       S S+G VAV+SAGTSDLAVAEEAA+LAELAGAEV R HDVGVAGIHRLLG IP V++AGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKSSK A
Sbjct:    3 TTRSLSSTATGGEAAGDLPALLARVAAGDLSPATAASQLAPLLVSGGAQAEDVGGFAKIDHDRRRRVGFPEVVFGDGKSAEQITDILAAMIREARAGSRVAAEAAAVHXXXXXXXXXXXXXXXXXXXXSPVVATRVSPEKWLVISDALPGQLTYHADARIVSFGEPPQRRRAAGDGAPGGSIATSISIGTVAVLSAGTSDLAVAEEAAVLAELAGAEVSRFHDVGVAGIHRLLGAIPSVQKAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKSSKVA 324
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BLAST of mRNA_F-serratus_M_contig1435.3115.1 vs. uniprot
Match: A0A835ZD94_9STRA (Phosphoribosylaminoimidazole carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZD94_9STRA)

HSP 1 Score: 243 bits (621), Expect = 3.170e-74
Identity = 150/283 (53.00%), Postives = 185/283 (65.37%), Query Frame = 2 
Query:  215 PSVAASQLSPLLVAGGAQAEDVGGFAKIDHQRRLRVGFPEVVFGEGKSASQIVDILTAMI---KEHS----------------ASGA-GSSPIVATRVSAEKWADISVDLQGLRYHAEARVVAFGGPPPLAERPPTPSTSRGFQGSSSVGKVAVMSAGTSDLAVAEEAALLAELAGAEVVRLHDVGVAGIHRLLGVIPVVEQAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKSSKAA 1003
            P+ A  QL PLL         +G FAKIDH R +R GFPEVV+GEGK+  QI  I+  MI   K HS                +SG+   +P VA+R+ + KW+ +   + GL+Y+ +AR+  + G  P A              + S+G VAVM AGTSD+A+AEE A+L EL GA V R++DVGVAGIHRL   +P V  A  A+C+AGMDGAMP VVAGLV+CPVVAVPTSVGYGAA  G+APLLTMLNACAPGV+VVNIDNGFGAAA AVK+L+   AA
Sbjct:    3 PAAAVEQLEPLLT-----IAHIGDFAKIDHHRTIRTGFPEVVYGEGKTPEQIRHIMEVMIRHRKSHSXXXXXXXXXXXXXXXXSSGSVDHAPAVASRICSAKWSHLQ-HIDGLQYYRDARLAVYHGSAPPA--------------AGSLGTVAVMCAGTSDVAIAEETAVLLELCGAAVERVYDVGVAGIHRLFAALPRVRAAHCAVCIAGMDGAMPSVVAGLVRCPVVAVPTSVGYGAAFGGVAPLLTMLNACAPGVAVVNIDNGFGAAAMAVKILRMRHAA 265
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BLAST of mRNA_F-serratus_M_contig1435.3115.1 vs. uniprot
Match: A0A0D8ZKY4_9CYAN (1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate carboxylase n=2 Tax=Aliterella TaxID=1827277 RepID=A0A0D8ZKY4_9CYAN)

HSP 1 Score: 227 bits (578), Expect = 5.710e-68
Identity = 138/279 (49.46%), Postives = 180/279 (64.52%), Query Frame = 2 
Query:  158 KPTSDLQALLNRVAAGELPPSVAASQLSPLLVAGGAQAEDVGGFAKIDHQRRLRVGFPEVVFGEGKSASQIVDILTAMIKEHSASGAGSSPIVATRVSAEKWADISVDLQGLRYHAEARVVAFGGPPPLAERPPTPSTSRGFQGSSSVGKVAVMSAGTSDLAVAEEAALLAELAGAEVVRLHDVGVAGIHRLLGVIPVVEQAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKSS 994
            +P ++LQ LL  VAAGE+ P+VA  +L           E VG FA+IDH R+LR GFPEV++G+ K+  QI  I+TAM +        SS ++ATR+ +  +A +   + GL Y+  AR+ A     P    P  P T            + ++SAGT+DL VAEEAA+ A L G +V RL DVGVAGIHRLL    V++ A V I VAGM+GA+P VVAGL  CPV+AVPTS+GYGA+  GLAPLLTMLN+CA GV VVNIDNGFGAA  A ++L+++
Sbjct:    3 QPDANLQNLLESVAAGEINPAVALEKLKHFAY------EPVGDFARIDHHRKLRTGFPEVIWGQDKTPDQIAQIMTAMRQR-------SSVVMATRIESTVYAQLETKVAGLAYYPSARICAIA---PANIEPEYPGT------------IGILSAGTADLPVAEEAAVTATLCGFQVQRLWDVGVAGIHRLLNNRHVIDSASVLIVVAGMEGALPSVVAGLADCPVIAVPTSIGYGASFGGLAPLLTMLNSCAAGVGVVNIDNGFGAAILAGQILRTA 253
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BLAST of mRNA_F-serratus_M_contig1435.3115.1 vs. uniprot
Match: UPI001482DFB4 (nickel pincer cofactor biosynthesis protein LarB n=1 Tax=Leptolyngbya sp. BC1307 TaxID=2029589 RepID=UPI001482DFB4)

HSP 1 Score: 226 bits (575), Expect = 1.700e-67
Identity = 139/272 (51.10%), Postives = 176/272 (64.71%), Query Frame = 2 
Query:  182 LLNRVAAGELPPSVAASQLSPLLVAGGAQAEDVGGFAKIDHQRRLRVGFPEVVFGEGKSASQIVDILTAMIKEHSASGAGSSPIV-ATRVSAEKWADISVDLQGLRYHAEARVVAFGGPPPLAERPPTPSTSRGFQGSSSVGKVAVMSAGTSDLAVAEEAALLAELAGAEVVRLHDVGVAGIHRLLGVIPVVEQAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKSS 994
            L   VAAG L P  A  +L       G   E+VGGFAKIDHQR +R GFPEV++G+ K+A QI++I+ AM   H        P+V ATRV A K AD+   L    Y   AR+ A      LA +P               G +++++AGT+DL VAEEAA+ AEL G +V RL DVGVAGIHRLL    V++QA V I  AGM+GA+P VVAGL +CPV+AVPTS+GYGA+  GLAPLLTMLN+CA G+ VVNIDNGFGAA  A ++L+++
Sbjct:   10 LFQAVAAGRLSPEAAIDKLQASEKVSGY--EEVGGFAKIDHQRTIRTGFPEVIWGQDKTAGQIIEIMLAMEPLH--------PVVMATRVDAHKGADVQSALSQATYFDTARICAIRPQASLAVQP---------------GNLSILTAGTADLPVAEEAAVTAELCGFQVTRLWDVGVAGIHRLLSNRHVIDQADVLIVAAGMEGALPSVVAGLAQCPVIAVPTSIGYGASFQGLAPLLTMLNSCATGIGVVNIDNGFGAAILAGQILRTA 256
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BLAST of mRNA_F-serratus_M_contig1435.3115.1 vs. uniprot
Match: A0A3C0N4P5_9CYAN (Nickel pincer cofactor biosynthesis protein LarB n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A3C0N4P5_9CYAN)

HSP 1 Score: 224 bits (570), Expect = 1.110e-66
Identity = 140/274 (51.09%), Postives = 178/274 (64.96%), Query Frame = 2 
Query:  173 LQALLNRVAAGELPPSVAASQLSPLLVAGGAQAEDVGGFAKIDHQRRLRVGFPEVVFGEGKSASQIVDILTAMIKEHSASGAGSSPIVATRVSAEKWADISVDLQGLRYHAEARVVAFGGPPPLAERPPTPSTSRGFQGSSSVGKVAVMSAGTSDLAVAEEAALLAELAGAEVVRLHDVGVAGIHRLLGVIPVVEQAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKSS 994
            LQ+LL  VAAGE+ P+VA  +L  L        E VG FA+IDH RRLR GFPEV++G GK+  QI  I+  M     A+     PI+ATR+  + +A +   + G++Y+  AR+ A            TP T          G ++++ AGTSDL VAEEAA+ AEL G +V RL DVGVAGIHRLL    V+ +A V I +AGM+GA+P VVAGL  CPV+AVPTSVGYGA  SGLAPLLTMLN+CA GV VVNIDNGFGAA  A ++L+++
Sbjct:    7 LQSLLEAVAAGEVKPAVALEKLKHLAY------ETVGDFARIDHHRRLRTGFPEVIWGPGKTPDQIAQIMEVM---RDAAAPDIVPIMATRIEPDVFAKLQEKVPGIQYYPTARICAI-----------TPKTLEPTYS----GIISLICAGTSDLPVAEEAAITAELCGFQVRRLWDVGVAGIHRLLNNRQVIAEANVLIVIAGMEGALPSVVAGLADCPVIAVPTSVGYGANFSGLAPLLTMLNSCAAGVGVVNIDNGFGAAILAGQILRTA 256
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BLAST of mRNA_F-serratus_M_contig1435.3115.1 vs. uniprot
Match: A0A841WXW1_9NOSO (Nickel pincer cofactor biosynthesis protein LarB n=8 Tax=Nostocales TaxID=1161 RepID=A0A841WXW1_9NOSO)

HSP 1 Score: 223 bits (569), Expect = 1.380e-66
Identity = 138/277 (49.82%), Postives = 180/277 (64.98%), Query Frame = 2 
Query:  170 DLQALLNRVAAGELPPSVAASQLSPLLVAGGAQAEDVGGFAKIDHQRRLRVGFPEVVFGEGKSASQIVDILTAMIKEHSASGAGSSPIV-ATRVSAEKWADISVDLQGLRYHAEARVVAFGGPPPLAERPPTPSTSRGFQGSSSVGKVAVMSAGTSDLAVAEEAALLAELAGAEVVRLHDVGVAGIHRLLGVIPVVEQAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKSSK 997
            +L++LL  VA G++ P +A   L  L        E VG FAKIDH R+LR GFPEV++G GK+  QI  I+  M           SP+V ATR+    ++ +   ++GLRY+  AR+ A             PS    FQG     ++ ++SAGT+DL VAEEAA+ AEL+G +V RL DVGVAGIHRLL    V++ A V I VAGM+GA+P VVAGL  CPV+AVPTS+GYGA+ SGLAPLLTMLN+CA GV VVNIDNGFGAA  A ++L++++
Sbjct:    6 NLRSLLEAVANGKVSPDIALDSLKDLTY------ESVGEFAKIDHHRQLRTGFPEVIWGPGKTPEQIAQIIEVMRLR--------SPVVMATRIEPGVYSTLQAKVRGLRYYEMARICAIA----------PPSIEPQFQG-----EIGILSAGTADLPVAEEAAVTAELSGFQVKRLWDVGVAGIHRLLNNRHVIDSASVLIVVAGMEGALPSVVAGLANCPVIAVPTSIGYGASFSGLAPLLTMLNSCAAGVGVVNIDNGFGAAVLAGQILRTAE 253
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BLAST of mRNA_F-serratus_M_contig1435.3115.1 vs. uniprot
Match: UPI00034BB7BF (nickel pincer cofactor biosynthesis protein LarB n=1 Tax=Pleurocapsa sp. PCC 7319 TaxID=118161 RepID=UPI00034BB7BF)

HSP 1 Score: 223 bits (569), Expect = 1.380e-66
Identity = 135/281 (48.04%), Postives = 180/281 (64.06%), Query Frame = 2 
Query:  173 LQALLNRVAAGELPPSVAASQLSPLLVAGGAQAEDVGGFAKIDHQRRLRVGFPEVVFGEGKSASQIVDILTAMIKEHSASGAGSSPIVATRVSAEKWADISVDLQGLRYHAEARVVAFGGPPPLAERPPTPSTSRGFQGSSSVGKVAVMSAGTSDLAVAEEAALLAELAGAEVVRLHDVGVAGIHRLLGVIPVVEQAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKSSKAAGEPS 1015
            LQ LL  +A GE+ P  A  +L  L        E V  FAKIDH RRLR GFPEV++G  K+  QI+ I+TAM +       G + ++ATR+ AE +  + + +  L+Y+  AR+ A   P    E P            + +G +++++AGT+D+ VAEEAA+ AEL+G  V RL DVGVAGIHRLL    VV  A V I VAGM+GA+P VVAG+  CPV+ VPTS+GYGA+ SG+APLLTMLN+CA G+ VVNIDNGFGAA  A ++L+++K  G  S
Sbjct:    7 LQNLLQAIANGEISPETALEKLKHL------PFEPVDEFAKIDHHRRLRTGFPEVIWGADKTPEQIIKIITAMRQ-------GDTVVMATRIEAEVYQQLKIAIPDLKYYPTARICALSAP----EAP------------TQIGTISILTAGTADIPVAEEAAITAELSGFAVTRLWDVGVAGIHRLLSHRHVVNDADVLIVVAGMEGALPSVVAGMADCPVIGVPTSIGYGASFSGVAPLLTMLNSCAAGIGVVNIDNGFGAAILAGQILRTAKKIGAVS 258
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BLAST of mRNA_F-serratus_M_contig1435.3115.1 vs. uniprot
Match: A0A6P0ZBP3_9CYAN (Nickel pincer cofactor biosynthesis protein LarB n=2 Tax=unclassified Sphaerospermopsis TaxID=2646443 RepID=A0A6P0ZBP3_9CYAN)

HSP 1 Score: 223 bits (568), Expect = 2.130e-66
Identity = 139/286 (48.60%), Postives = 185/286 (64.69%), Query Frame = 2 
Query:  170 DLQALLNRVAAGELPPSVAASQLSPLLVAGGAQAEDVGGFAKIDHQRRLRVGFPEVVFGEGKSASQIVDILTAMIKEHSASGAGSSPIVATRVSAEKWADISVDLQGLRYHAEARVVAFGGPPPLAERPPTPSTSRGFQGSSSVGKVAVMSAGTSDLAVAEEAALLAELAGAEVVRLHDVGVAGIHRLLGVIPVVEQAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKSSKAAGEPS*SSD 1027
            +L++LL  VA G++ P  A + L  L        E VG FAKIDH R LR GFPEV++G GK+  QI  I+  M +        +S ++ATR+S + +A +   ++GL+Y   AR+ A   PP +  R P              G +A++SAGT+DL VAEEAA+ AEL+G  V RL DVGVAGIHRLL    ++  A V I VAGM+GA+P VVAGLV CPV+AVPTS+GYGA+ SGLAPLLTMLN+CA G+ VVNIDNGFGAA  A ++L++++     S S++
Sbjct:    6 NLRSLLESVANGKISPDTALASLKDLAY------EPVGEFAKIDHHRHLRTGFPEVIWGPGKTPEQIAQIMEVMRER-------TSVVMATRISLDVYAILQKKVRGLKYFQSARICALT-PPEIIPRFP--------------GTIAILSAGTADLPVAEEAAVTAELSGFLVNRLWDVGVAGIHRLLDNRHLISSASVLIVVAGMEGALPSVVAGLVDCPVIAVPTSIGYGASFSGLAPLLTMLNSCAAGIGVVNIDNGFGAAVLAGQILRTAEKLSSTSESNE 263
[Close]
BLAST of mRNA_F-serratus_M_contig1435.3115.1 vs. uniprot
Match: K9TXV1_CHRTP (1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase n=4 Tax=Chroococcidiopsis TaxID=54298 RepID=K9TXV1_CHRTP)

HSP 1 Score: 221 bits (564), Expect = 6.340e-66
Identity = 134/274 (48.91%), Postives = 179/274 (65.33%), Query Frame = 2 
Query:  173 LQALLNRVAAGELPPSVAASQLSPLLVAGGAQAEDVGGFAKIDHQRRLRVGFPEVVFGEGKSASQIVDILTAMIKEHSASGAGSSPIVATRVSAEKWADISVDLQGLRYHAEARVVAFGGPPPLAERPPTPSTSRGFQGSSSVGKVAVMSAGTSDLAVAEEAALLAELAGAEVVRLHDVGVAGIHRLLGVIPVVEQAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKSS 994
            L++LL  VAAG + P+VA  +L           E VG FA+IDH R+LR GFPE ++G+GK+  QIV I+ AM + +S        ++ATR+  +    +   ++GLRY+  A++ A     P+   P  P            GK+ ++SAGT+DL VAEEAA+ AEL+   V+RL DVGVAGIHRLL    V+ +A V I VAGM+GA+P VVAGL  CPV+AVPTSVGYGA+  GLAPLLTMLN+CA G+ VVNIDNGFGAA  A ++L+++
Sbjct:    7 LRSLLESVAAGNVSPTVALDKLKHFTY------EPVGEFARIDHHRQLRTGFPETIWGQGKTPDQIVQIMAAMRQRNSV-------VMATRIEPDVAEQLEEKVEGLRYYPMAKIAAIA---PVRIEPQYP------------GKIGILSAGTADLPVAEEAAITAELSSFRVLRLWDVGVAGIHRLLDNRHVIAEASVLIVVAGMEGALPSVVAGLADCPVIAVPTSVGYGASFGGLAPLLTMLNSCAAGIGVVNIDNGFGAAILAGQILRTA 252
[Close]
BLAST of mRNA_F-serratus_M_contig1435.3115.1 vs. uniprot
Match: A0A350YA24_9CYAN (Nickel pincer cofactor biosynthesis protein LarB n=2 Tax=unclassified Cyanobacteria TaxID=1983111 RepID=A0A350YA24_9CYAN)

HSP 1 Score: 221 bits (563), Expect = 1.260e-65
Identity = 137/278 (49.28%), Postives = 179/278 (64.39%), Query Frame = 2 
Query:  164 TSDLQALLNRVAAGELPPSVAASQLSPLLVAGGAQAEDVGGFAKIDHQRRLRVGFPEVVFGEGKSASQIVDILTAMIKEHSASGAGSSPIV-ATRVSAEKWADISVDLQGLRYHAEARVVAFGGPPPLAERPPTPSTSRGFQGSSSVGKVAVMSAGTSDLAVAEEAALLAELAGAEVVRLHDVGVAGIHRLLGVIPVVEQAGVAICVAGMDGAMPGVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGFGAAAFAVKLLKSS 994
            T  LQ+LL  VAAG++   +A  +L           E VG FAKIDH R LR GFPEV++G GK+ +QI  I+ AM + +        P+V ATR+  + +A +   + G+ Y+  AR+ A   P P+  + P              G ++V+ AGTSDL VAEEAA+ AEL G +V RL DVGVAGIHRLL    ++  A V I +AGM+GA+P VVAGL  CPV+AVPTSVGYGA+ +GLAPLLTMLN+CAPGV VVNIDNGFGAA  A ++L+++
Sbjct:    4 TEALQSLLEAVAAGQISSDIALEKLKNFAF------EPVGDFAKIDHHRSLRTGFPEVIWGLGKTPNQIAQIMEAMQRRN--------PLVMATRIEPDVFAQLEAHIAGIHYYPTARICAIA-PNPIQPKYP--------------GIISVICAGTSDLPVAEEAAVTAELCGFQVQRLWDVGVAGIHRLLSHRQMIADANVLIVIAGMEGALPSVVAGLADCPVIAVPTSVGYGASFNGLAPLLTMLNSCAPGVGVVNIDNGFGAAILAGQILRTA 252
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1435.3115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNM3_ECTSI1.530e-11967.39Phosphoribosylaminoimidazole carboxylase n=2 Tax=E... [more]
A0A835ZD94_9STRA3.170e-7453.00Phosphoribosylaminoimidazole carboxylase n=1 Tax=T... [more]
A0A0D8ZKY4_9CYAN5.710e-6849.461-(5-phosphoribosyl)-5-amino-4-imidazole-carboxyla... [more]
UPI001482DFB41.700e-6751.10nickel pincer cofactor biosynthesis protein LarB n... [more]
A0A3C0N4P5_9CYAN1.110e-6651.09Nickel pincer cofactor biosynthesis protein LarB n... [more]
A0A841WXW1_9NOSO1.380e-6649.82Nickel pincer cofactor biosynthesis protein LarB n... [more]
UPI00034BB7BF1.380e-6648.04nickel pincer cofactor biosynthesis protein LarB n... [more]
A0A6P0ZBP3_9CYAN2.130e-6648.60Nickel pincer cofactor biosynthesis protein LarB n... [more]
K9TXV1_CHRTP6.340e-6648.911-(5-phosphoribosyl)-5-amino-4-imidazole-carboxyla... [more]
A0A350YA24_9CYAN1.260e-6549.28Nickel pincer cofactor biosynthesis protein LarB n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1435contigF-serratus_M_contig1435:161329..167302 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score366.7
Seed ortholog evalue1.1e-98
Seed eggNOG ortholog2880.D8LNM3
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.AIR carboxylase
EggNOG OGs2S0IG@2759,COG1691@1
Ec32 ortholog descriptionNCAIR mutase (PurE)-related proteins
Ec32 orthologEc-08_006600.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size1405
Cds size963
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1435.3115.1prot_F-serratus_M_contig1435.3115.1Fucus serratus malepolypeptideF-serratus_M_contig1435 161384..166915 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.084473-UTR-F-serratus_M_contig1435:161328..1613831622929422.084473-UTR-F-serratus_M_contig1435:161328..161383Fucus serratus maleUTRF-serratus_M_contig1435 161329..161383 +
1690962844.5304153-UTR-F-serratus_M_contig1435:161328..1613831690962844.5304153-UTR-F-serratus_M_contig1435:161328..161383Fucus serratus maleUTRF-serratus_M_contig1435 161329..161383 +
1622929422.146206-UTR-F-serratus_M_contig1435:166915..1673021622929422.146206-UTR-F-serratus_M_contig1435:166915..167302Fucus serratus maleUTRF-serratus_M_contig1435 166916..167302 +
1690962844.5625534-UTR-F-serratus_M_contig1435:166915..1673021690962844.5625534-UTR-F-serratus_M_contig1435:166915..167302Fucus serratus maleUTRF-serratus_M_contig1435 166916..167302 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929422.1006055-CDS-F-serratus_M_contig1435:161383..1614431622929422.1006055-CDS-F-serratus_M_contig1435:161383..161443Fucus serratus maleCDSF-serratus_M_contig1435 161384..161443 +
1690962844.5397956-CDS-F-serratus_M_contig1435:161383..1614431690962844.5397956-CDS-F-serratus_M_contig1435:161383..161443Fucus serratus maleCDSF-serratus_M_contig1435 161384..161443 +
1622929422.1138325-CDS-F-serratus_M_contig1435:165414..1659871622929422.1138325-CDS-F-serratus_M_contig1435:165414..165987Fucus serratus maleCDSF-serratus_M_contig1435 165415..165987 +
1690962844.5472848-CDS-F-serratus_M_contig1435:165414..1659871690962844.5472848-CDS-F-serratus_M_contig1435:165414..165987Fucus serratus maleCDSF-serratus_M_contig1435 165415..165987 +
1622929422.1294174-CDS-F-serratus_M_contig1435:166585..1669151622929422.1294174-CDS-F-serratus_M_contig1435:166585..166915Fucus serratus maleCDSF-serratus_M_contig1435 166586..166915 +
1690962844.5550559-CDS-F-serratus_M_contig1435:166585..1669151690962844.5550559-CDS-F-serratus_M_contig1435:166585..166915Fucus serratus maleCDSF-serratus_M_contig1435 166586..166915 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1435.3115.1

>prot_F-serratus_M_contig1435.3115.1 ID=prot_F-serratus_M_contig1435.3115.1|Name=mRNA_F-serratus_M_contig1435.3115.1|organism=Fucus serratus male|type=polypeptide|length=321bp
MATIFVVRTMNSRPHYFSPTYTSTFRLARRCLCAKPTSDLQALLNRVAAG
ELPPSVAASQLSPLLVAGGAQAEDVGGFAKIDHQRRLRVGFPEVVFGEGK
SASQIVDILTAMIKEHSASGAGSSPIVATRVSAEKWADISVDLQGLRYHA
EARVVAFGGPPPLAERPPTPSTSRGFQGSSSVGKVAVMSAGTSDLAVAEE
AALLAELAGAEVVRLHDVGVAGIHRLLGVIPVVEQAGVAICVAGMDGAMP
GVVAGLVKCPVVAVPTSVGYGAAMSGLAPLLTMLNACAPGVSVVNIDNGF
GAAAFAVKLLKSSKAAGEPS*
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mRNA from alignment at F-serratus_M_contig1435:161329..167302+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1435.3115.1 ID=mRNA_F-serratus_M_contig1435.3115.1|Name=mRNA_F-serratus_M_contig1435.3115.1|organism=Fucus serratus male|type=mRNA|length=5974bp|location=Sequence derived from alignment at F-serratus_M_contig1435:161329..167302+ (Fucus serratus male)
GCCAACCCCTCGAGCGAACACTTATATTGTAGAGTGGGGTGGTAAACTGC
ACAAAATGGCGACCATATTTGTTGTTCGCACGATGAACTCTAGGCCTCAC
TACTTTTCTCCGACGGTGAGTTCGCCTATTTTATGTAGATGCACAATTAC
AAGTACTGCTTGTGGAGTAATCTTCTTTTTGCTCTTGTCGTCGTGTGGAA
CTGGTCGAGAAGACAGTAATTATCGAAAAAAGGAAGTAACATACCATCAT
GTTTTGCGAGAAACCCCATGAAGGCATTTTCATTACTTCATTCTACTCGG
TGTCATGGAGTTATTGAACTCCCGGTAGATTCTTGTCGGCAGTAGCGTCC
CTCGAGAGAGAGACCAGGCAAGCGATGGATGGGTAAAGGTATCTTCGTTA
ACTTTTCGTCCCTTGAAGTACCTACCAACTTACATGTAGAATGGATCAAA
CGAGGAATCAACACGTATACCAATTTACACACATAATTGCGCCGCAACCT
ACGTCCAATCATCTATCACCACCAATATACGTTACATTTCGAAGAACATG
CCTGCCAACGCGATCACATCGGATGAACAAAATTACCAGGTAGTCATCAG
ACCACGTACCGGATTGGCAACAGCGTATATTACTGGGTATGGTTGAGGCC
CGATCGGTCAAATAATGTAAACAACACAACAACAACATGATGAATCCGCA
CACTTAACACACCACTAAACACTTGATGATTTGAATTGATTAAATTCTCA
CAAAAACTAAAATAAAAATGCCCAACGGGTGGAGAACGATTAATTCGTTA
GTACACAAAATTCGACTTCACGGTCGACGAGGGAAAGGAATGGCTGAATC
TTTCCTCGCGAGAAAAATTAAGGCGCGCACCGCAGAAGGAAGGGGGATGG
GAAATCCTGTGTGACCTTCCTCCTGTGTGACCCCGGCTGGTACGTCCATT
GATGTCCAGAATAGATGGGAAGAAAACACACACACACATAAGCTGACGTC
AAAAATCCAGCCCGTGGTCACAAGGTAGACTTGAAACAGACGACATATTA
TATATTATCTCTGCGGATCCCGCTCCTTACGGTCCGGACCTTAATATTGT
TGTTTAAAGTAAAATCTGAACGCGCCTAGACCTTCTGAGCATCCCCCAGT
CAGGGGGGAAAATGCATGTTGTTGTTGTTGTTGCCTTCACATTAAAAACC
GTGACCTCTATCCAGTACCTTCTCTTTCTTACTCTTCAAGGCAAAGAAAC
CAATTATTTCTGTGGTCACAACCTAACCCAAAATAAGGTACAGAAAAAGA
AAAGAAAAAGAAAACGAGACCAAAAAAAACAAAGTCCCAACACTTGCGAA
AAATATTAAACAGGTTCCTGAAAATAACAAGTTCAGAAAAACAAGAAGCA
GGTTAGTTTCTGGTGTCCCTGCATGGCGGTGGGCTTTTCCCCGACATTGT
ATTGTTGACCCAATGCTACTGCCATAGGGGAACCCGTTCAAATGCCATGA
AGAGGTTTTGTATTTGCAGCCTATGATCCCGCCTAAACGTTTTGGCATTG
TTTTCCTCCTGACTGAGGGATGCGCAGAAGGAATAGGCGCGTTCTGATTT
TTCTTTTAAAACCTCAAAAAGGAAGTAGAGCCCATCGGTCCAACTCGGAA
GCTGAGTCGCAAACAAAATACCGTATACATATACTATATAGGAGTACTGT
ACCACTACAGCTAAAAAAACTAAATTTGAAGAGGAAGCTATACTCCCTCC
CCTACGAAGCCGGGGAGTGTTAGTGTTCATCGTCGAGTTCCCGCCGACCA
GGCCATCCGCACTCAACACCCTGGAGCTGTGAGAGGGCAAAAACAAAATC
AACCACGCACATCATGCAAGATAGTAAATACCCTATGTTCTAGACAGTGT
CTACACGCGCCTCTACTATAGCTATGCCGGGAGCTCTTTGTCGGGTTTCT
CACCAACCATACCAGGCAAACACCCCCCTGAGGCCCACTCTTAGACCATC
TTTTACGGGCTAGGTGCATTCACATTTTTCTTTAAACAACTATATTATTT
TTTTTCCCTCGACTCCATCGTATTTGGGACCCAAATACGATGGAGTTGAG
GACAATCGTATTTGCTGTTTTCGATTTGACTTGTAGGTGTGTGCATTTGA
AAGTACGAAGTTACCATCGTGCCAGAGAGGTCGGACGGCCGCGATGAACG
CCTCTGGGGAGCGCTATAGCTCTGGTTGTGTTCTTAACCTACGAGAAACG
GCGATGAACCAGGACCATGGCCGAGTAGGCTCTGATTTTGGACGGGCTAG
AGGACGGCGTGGCTTCAACGAAAGCTTTAAGACGGAAAACGAAACAAAGC
AAAGCACAACAAAACAAACAAACGCAACACTAGAGAAAGACGTCATGACA
TCTGCGAACCAAACGCCCGGAGGATACAAGTTCGCGCCACTTGTGGCTAG
TCAGCAAGGGCGAGCGAACCAGCACGAGCCCGCTTGCTTTGGGCTATCCT
CTCCTTGGTGCGCAGGGTCGAATCGCGTGAGGGTCCGACCTCTCGGAGTG
GTCTGTTCACCGCATCTGCAAAGGAGATATTTGTGAGGCGTTCGCAGCAG
AGGTACGCGGAGCACACAGATTTTGTTTGCTGGCCGAAGTTAGAAGAAAT
TGAGTTGCTTGGGTTCTGAGATCCCTTGAAGTTGAAGTCAGATTAGGTTC
GAGAACGAACGTCTCCGGTTCAAAGCCGAGCGATCGTCAATCAAAACTGG
CACATATCTGCGCAGGCTGTATCCGCTGTTCTATGTACGAGTACGTTTGT
GCAATATTTTCAGCGCCATTTGTAACAGAAAGCACTATTATTATACCAGG
TAGTCATTTGAAGGGCAAAAGGGTTTCGGATACGTACAGTATTAATATTA
TAGTAACACCAACAACTTCCCTCGCATGCCGACGCACGCGCTTGCTGTGT
GTATTGGTGTGTTCTGTCTGAAGGCTAGACGGGGTACTAAACAGTATGTA
TGGTCATAGTCCTCACACACTCAGAAAGAGTAAGGATCAACCGGGTTAGG
TTGCCAAACCTGCTCGTGGTCAGCTGAACAGGGAAAATGAATATTTTCCT
GTCCCCGTTCGCGTCTGAGAATTTGGTCTCGCGAGACGGGTTCGGCAGTC
CCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGCTGAATCTGGTGCT
TACTCACGATGTTCCTCCCGAGTTCCTCGGCGGCGTCCATTTATTTATTC
AAAACGCCATACACCATCGGGTCGGTCCCGAGTTTATCGGGTCACGCAAT
TGCGTACCGATGGCGCTCACTGCCGAGAGTCCGCCAGCAAAGGGTCAGTA
AACCTCACGGTAGTTCCGAACTAGTACTGCCTTGGCAGGTCACCATATGA
CCAATTAATATGCGCCTCTATTTTCCCACACCCACTATTATTATTGgtat
GAAGTGGCATGTTTAAAGTAACGGCGTTACCGATACTTGTCATCTTTGGG
TTAACGTCTTCACGCAGTAGAGCGATATCGTATTAATAATGTTTGCCGCT
CGTCGCCCGCGTGGTCTAGTAGGCAACCTGCACACCTGCTAGTGCGGAAG
TCGTGAATTCGATTCTTACCAAAGTAGGATTTGTGTTCTTTCTTTCGTAA
CGGAAAGCGTGGGAACGTGAAAAGTTCAACCATTGGTTGACGAGTTGTAA
GATAGCTGAACTTGCATCGCGATAAACAAATTGTAAGGCGTGGACCGGGG
AGAGATGGGAAGATCCTTAGTGACCACAGGCAGGGTGGTAATGATGAGGG
CCATCGGCTatactattaATAAGTGAGTTTAAAGAAGAAAAAAGAAAGAG
AAAAAAAGTGCAGCCGATGCCAAAATACCTCAATACCCCTGTACTACTAC
CGTTTCCGCGAGTACCCTGAAGCTTGATTCAGCTGCACAATATACGACTG
GATAGTAGTCAGTCGTGGGAATTCGCTAATCCTCTAACTGCGTGGTCATT
TCCAACCATCTCCTTTTGCTCTCTCTCATCCACCGAAAACATGCTTTTTT
TTTTGCTGTCAACTTTTAACGCCCGATTTTCTCCAGTACACGAGTACGTT
CCGGCTCGCGCGCCGCTGCCTGTGTGCGAAGCCAACAAGCGATCTACAGG
CGCTCCTGAATCGTGTAGCCGCCGGAGAACTCCCCCCTTCCGTTGCCGCG
TCACAACTTTCCCCGCTGCTTGTAGCTGGCGGCGCACAAGCTGAGGACGT
CGGCGGCTTCGCCAAGATTGATCATCAACGCAGGCTGAGAGTGGGGTTTC
CAGAAGTAGTTTTCGGGGAAGGCAAATCGGCGAGCCAGATCGTGGACATC
CTAACGGCCATGATCAAAGAGCACTCGGCGAGCGGCGCTGGCAGCTCTCC
TATAGTAGCAACTAGAGTTTCAGCGGAAAAGTGGGCCGATATCTCTGTCG
ATCTACAGGGACTCCGGTACCATGCAGAAGCCCGGGTGGTGGCTTTCGGT
GGTCCACCCCCACTCGCGGAGAGGCCGCCGACGCCGTCTACATCTCGAGG
ATTTCAAGGCAGCAGCAGTGTCGGGAAGGTTGCAGTGATGAGTGCAGGTA
CTTCCGATCTTGCTGTGGCGGAGGAGGCGGCGTTATTGGCCGAGCTGGCA
GGGGCGGAGGTAATGAGAATTGAAACTTCCTCTACTGCTTTTCTAGAAGG
CGTGCTGGCATTACCGGTTTATGGCTGCCGCTAAGTGGGTGGATTTTTTT
TATTTTAGCATCATATAACTAGTGGCGGTAGGGTGGGTTGGACGCTTTTT
ATCGGTTTGGCCGTGTCTCCATTTCATATATATGCCCTCTCTCTGGCAAG
CTGTGTGACTGGCGTCTGCTTTCATCTACGATAGTGGTGCTATTATGCTT
CTGCTAATCTCTCCCGTGGACATTCGGGGAAGGGAGCAAACGGCACAGGA
AATTAGTACAACGCACACGTCAAGACAAACACGCGACTGTTTCAGCCAGC
CTCAGGTGGCGTAGAGGTTTGAATGGCGAAATTATAATGTCTTACTTGAA
ATAACATACGGAGTATATAGGAGCATTAGTTGCGTGACGAAATGGCAACA
CTCGAGCCTACATGACCGTGAAGTAACGCTGTTGCGATTTTTTTTTGTTT
TTCGAACCTTTTGAATGAATTCGTGCGTTTAGATATTGTTTTCAATGTTC
AACCTCGGCGGCTTGCGTTCGATTTCCCCTGAATGCTCCAAATGTACATA
TTTCCAGGTGGTGAGGCTCCACGACGTGGGCGTCGCTGGCATTCACCGGC
TCTTGGGGGTCATCCCTGTTGTTGAACAGGCAGGCGTGGCCATCTGCGTG
GCGGGAATGGACGGTGCCATGCCGGGTGTGGTCGCGGGGCTTGTAAAATG
CCCCGTGGTGGCTGTGCCGACCAGCGTGGGCTACGGTGCGGCCATGTCCG
GACTGGCTCCCCTGCTCACCATGCTCAACGCGTGTGCCCCCGGGGTATCG
GTCGTGAACATCGACAACGGCTTCGGGGCTGCTGCGTTCGCGGTTAAGCT
TCTCAAGAGCAGCAAGGCTGCCGGCGAGCCCTCTTAATCTAGTGATAGAT
AGGACACAGCAACATGCACTACAGTAGCTGCTGCACATCTACTCCGGCTT
TTGTACCAAAATTGGGTTGGATTTGAGAAACTCTTCCCTTGCATGCGTGA
GTGAATTAATGAAGCCGTACTTGATTAGGGAAATTGAAACGCCCTCAGAG
TTGTGTGGGTAGCCCCGAGGCATTCACTGCGGACAGAGAACCAAAGAATT
CGAGCGTCATTTTTTGCTGGAGCCTTCACTGAGGAGCTTGGTGTTTTGAC
TTTGTTCAGATTAATACGGTAGTGCGCAATCGTATACGTACATAGACCCA
TGTACATTTGCAAAACTGGGTTTTACGTGAACCGAAGAGATGAGATGATG
ACCGCATACTGTATAACACGAACG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1435:161329..167302+

>mRNA_F-serratus_M_contig1435.3115.1 ID=mRNA_F-serratus_M_contig1435.3115.1|Name=mRNA_F-serratus_M_contig1435.3115.1|organism=Fucus serratus male|type=CDS|length=1926bp|location=Sequence derived from alignment at F-serratus_M_contig1435:161329..167302+ (Fucus serratus male)
ATGGCGACCATATTTGTTGTTCGCACGATGAACTCTAGGCCTCACTACTT
TTCTCCGACGATGGCGACCATATTTGTTGTTCGCACGATGAACTCTAGGC
CTCACTACTTTTCTCCGACGTACACGAGTACGTTCCGGCTCGCGCGCCGC
TGCCTGTGTGCGAAGCCAACAAGCGATCTACAGGCGCTCCTGAATCGTGT
AGCCGCCGGAGAACTCCCCCCTTCCGTTGCCGCGTCACAACTTTCCCCGC
TGCTTGTAGCTGGCGGCGCACAAGCTGAGGACGTCGGCGGCTTCGCCAAG
ATTGATCATCAACGCAGGCTGAGAGTGGGGTTTCCAGAAGTAGTTTTCGG
GGAAGGCAAATCGGCGAGCCAGATCGTGGACATCCTAACGGCCATGATCA
AAGAGCACTCGGCGAGCGGCGCTGGCAGCTCTCCTATAGTAGCAACTAGA
GTTTCAGCGGAAAAGTGGGCCGATATCTCTGTCGATCTACAGGGACTCCG
GTACCATGCAGAAGCCCGGGTGGTGGCTTTCGGTGGTCCACCCCCACTCG
CGGAGAGGCCGCCGACGCCGTCTACATCTCGAGGATTTCAAGGCAGCAGC
AGTGTCGGGAAGGTTGCAGTGATGAGTGCAGGTACTTCCGATCTTGCTGT
GGCGGAGGAGGCGGCGTTATTGGCCGAGCTGGCAGGGGCGGAGTACACGA
GTACGTTCCGGCTCGCGCGCCGCTGCCTGTGTGCGAAGCCAACAAGCGAT
CTACAGGCGCTCCTGAATCGTGTAGCCGCCGGAGAACTCCCCCCTTCCGT
TGCCGCGTCACAACTTTCCCCGCTGCTTGTAGCTGGCGGCGCACAAGCTG
AGGACGTCGGCGGCTTCGCCAAGATTGATCATCAACGCAGGCTGAGAGTG
GGGTTTCCAGAAGTAGTTTTCGGGGAAGGCAAATCGGCGAGCCAGATCGT
GGACATCCTAACGGCCATGATCAAAGAGCACTCGGCGAGCGGCGCTGGCA
GCTCTCCTATAGTAGCAACTAGAGTTTCAGCGGAAAAGTGGGCCGATATC
TCTGTCGATCTACAGGGACTCCGGTACCATGCAGAAGCCCGGGTGGTGGC
TTTCGGTGGTCCACCCCCACTCGCGGAGAGGCCGCCGACGCCGTCTACAT
CTCGAGGATTTCAAGGCAGCAGCAGTGTCGGGAAGGTTGCAGTGATGAGT
GCAGGTACTTCCGATCTTGCTGTGGCGGAGGAGGCGGCGTTATTGGCCGA
GCTGGCAGGGGCGGAGGTGGTGAGGCTCCACGACGTGGGCGTCGCTGGCA
TTCACCGGCTCTTGGGGGTCATCCCTGTTGTTGAACAGGCAGGCGTGGCC
ATCTGCGTGGCGGGAATGGACGGTGCCATGCCGGGTGTGGTCGCGGGGCT
TGTAAAATGCCCCGTGGTGGCTGTGCCGACCAGCGTGGGCTACGGTGCGG
CCATGTCCGGACTGGCTCCCCTGCTCACCATGCTCAACGCGTGTGCCCCC
GGGGTATCGGTCGTGAACATCGACAACGGCTTCGGGGCTGCTGCGTTCGC
GGTTAAGCTTCTCAAGAGCAGCAAGGCTGCCGGCGAGCCCTCTTAAGTGG
TGAGGCTCCACGACGTGGGCGTCGCTGGCATTCACCGGCTCTTGGGGGTC
ATCCCTGTTGTTGAACAGGCAGGCGTGGCCATCTGCGTGGCGGGAATGGA
CGGTGCCATGCCGGGTGTGGTCGCGGGGCTTGTAAAATGCCCCGTGGTGG
CTGTGCCGACCAGCGTGGGCTACGGTGCGGCCATGTCCGGACTGGCTCCC
CTGCTCACCATGCTCAACGCGTGTGCCCCCGGGGTATCGGTCGTGAACAT
CGACAACGGCTTCGGGGCTGCTGCGTTCGCGGTTAAGCTTCTCAAGAGCA
GCAAGGCTGCCGGCGAGCCCTCTTAA
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