mRNA_F-serratus_M_contig1433.3104.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1433.3104.1
Unique NamemRNA_F-serratus_M_contig1433.3104.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
[Close]
BLAST of mRNA_F-serratus_M_contig1433.3104.1 vs. uniprot
Match: D7FJZ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJZ1_ECTSI)

HSP 1 Score: 177 bits (449), Expect = 1.240e-42
Identity = 192/647 (29.68%), Postives = 258/647 (39.88%), Query Frame = 1 
Query:  325 EHIAFSEIAHLDVESALFAQRLRAGSI--TASSESVVGS----------EDPAIRVKR-----------------------LREIERKRREDAKRKAKAVGAAGAHNQARGQPASQDEQPCFTGPCKNKPCVQRNDVEGKLLARRGKIKLELGRKVKRFHSLQRTVVEKEKQRDEASAESISLKNAVEIALEGMEDRQRRTQKVNEEIRQVTGELSPLEVEFRNLRKRHQEAVQPVMPLPRGLVSSNSVEWPTS--------------YGKPFTPDGLTVTFIA-VGRSRRQKSGKQEVIADSTDGGGGLSNHRNPSLAWQPPSCFDDDPLCDEPHNARIAAWKYPSRASTTSALAREHPGKFGRWGTEVREQWSCCL----------------WEKEENTNKNSRRPSSSVAGGCEIAPPPSIPGGMTTSDDVHLVLRRS-TEITGHAGERFGEGCDVTACEAFETRLTTNDAGRRMERRPRELSGWSYTNKQCSEAVRSPIRGRPQTTLTKI-GMEALTPSSRCAE-------NTFYRRDR-----------------------------GDRTHDGSCRSRGFTARYPVRAWPDSAPSKMKMSNDHLAVRRVSS-LTALRQARAKAGWQLVRVGPSTNNDYTQI 1950
            +HIAFS +AHL V++ LFA RLRAGS+   A ++SV+ S          EDPA R +R                           E      A  +  A+ +A  H                  PCKNK C +R  +E KL+A+  +IK EL  KVKR   L+R+V E+EK+RD A  E  +LK A E    G E++++R Q    E R++  E   LEVE R LR R+QE  Q  +P+P G + S +  W  +                  + PDGLTV+F    GR RR    ++  I+     GGG ++ R                               PS+         EHPG+FGRWGTE REQWSCCL                 E  +   +   R    VAGGCE  PP   PGGMT +DDV LV            G     G      EA+ T     D GR + R     S            +R     RPQT   ++ G +A    +  AE       N    R++                             G + +  + R R  +   P  A P    +    +N   AV+ +SS LTALR ARA+AGWQ     P +    T+ 
Sbjct:   14 KHIAFSHVAHLGVDNVLFALRLRAGSLDPVAVNKSVLASSTSDDAEGPAEDPAARGRRNXXXXXXXXXXXXXXXXXXXXXXXXXXEDNLNTAAGLEGSAISSALGHG----------------APCKNKSCGRREALEDKLMAKWEQIKTELADKVKRAQKLRRSVEEREKKRDAAVEEITALKEAEEGEAAGAEEQKKRIQAAESEGRRILEESQRLEVELRKLRVRYQEETQQKLPMPHGSIISEADAWAKAAEVAAXXXXXXXXXXXXXYVPDGLTVSFSTNEGRRRRTLHDEESAIS-----GGGPTSKR-------------------------------PSQ---------EHPGRFGRWGTEAREQWSCCLCGDDSGGXXXXXXXXXXEDVDGGRRGRIRGRVGVAGGCEAVPPRLGPGGMTAADDVRLVWGSGGXXXXXXCGSSGSAGAGRIRREAWGT-AQGGDDGRELWRPMLATSVSGGGGGAAWSLIRQ--HRRPQTANARLMGRKAAAGPTTAAEASRGGISNASQARNKARXXXXXXXXXXXXXXVRRECHRKCDVVYGGKHNGNNRRGRPRSCARPGSAPPAGTTTGRNHNNKQHAVKNISSSLTALRSARARAGWQRKGSTPVSRGGITRF 596
[Close]
BLAST of mRNA_F-serratus_M_contig1433.3104.1 vs. uniprot
Match: A0A6H5K8Z7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z7_9PHAE)

HSP 1 Score: 137 bits (346), Expect = 9.520e-30
Identity = 154/521 (29.56%), Postives = 204/521 (39.16%), Query Frame = 1 
Query:  592 PCKNKPCVQRNDVEGKLLARRGKIKLELGRKVKRFHSLQRTV-----------VEKEKQRDEASAESISLKNAVEIALEGMEDRQRRTQKVNEEIRQVTGELSPLEVEFRNLRKRHQEAVQPVMPLPRGLVSSNSVEWPTSYG--------------KPFTPDGLTVTFIAVGRSRRQKSGKQEVIADSTDGGGGLSNHRNPSLAWQPPSCFDDDPLCDEPHNARIAAWKYPSRASTTSALAREHPGKFGRWGTEVREQWSCCL----------WEKEENTNKNSRRPSSSVAGGCEIAPPPSIPGGMTTSDDVHLVLRRSTEIT-------------GHAGERFG--EGCDVTACEAFETRLTTNDAGR---------RMERRPRELSGWSYTNKQC----------SEAVRSPIRGRPQTT--LTKIGMEALTPSSRCAENTFYRRDR----GDRTHDGSCRSRGFTARYPVRAWP-DSAPSKMKMSNDHLAVRRVSSLTALRQARAKAGWQLVRVGPS 1926
            PC+NK C +R  +E KL+A+  +IK EL  KVK    L+R+V            EKEK+RD    E  +LK A E    G+E                      LEVE R LR R+QE  Q  +P+P G + S +  W  +                 P+ PDGLTV+F   G  RR+    +E    S   GGG ++ R                               PS+         EHPG+FGRWGTE RE+WSCCL                  +   R    V GGCE  PP   PGGMT +DDV LV  R  +               G   E +G   G D    E +   L T+ +G          R  RRP+  +      K            +EA R  I+  PQ      + G  A    +  +      R R    G + +D +   R  ++  P  A P  + P +   +  H      SSLTALR ARA+AGWQ  R GP+
Sbjct:  101 PCRNKSCGRREALEDKLMAKWEQIKTELAAKVKHAQKLRRSVSEWSRARARGGAEKEKKRDATVEEITALKEAEEGESAGVEXXXXXXXXXXXXXXXXXXXXXRLEVELRKLRVRYQEETQQKLPMPHGSIISEADAWAKAAEVAAAALSDEDEEPLPPYVPDGLTVSFSTNGGRRRRTLHDEE----SAITGGGQTSKR-------------------------------PSQ---------EHPGRFGRWGTEARERWSCCLCGDXXXXXXXXXXXXXGRRGIVRGRVGVVGGCEAVPPRLGPGGMTAADDVRLVWGRGGDXXXXXXXXXXXXXXGGTRREAWGAARGGD-DGRELWRPMLATSVSGGSGGAAWSLIRQHRRPQTANARLMGRKAAXXXXXXXTTATEASRGGIKYAPQARNKAQRAGGVACGGGAAASVGRECHRKRDVVYGGKHNDTNRGGRPRSSARPGSAPPAGTTPGRNHNNKQHAVKNTSSSLTALRSARARAGWQ--RKGPT 574
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1433.3104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FJZ1_ECTSI1.240e-4229.68Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8Z7_9PHAE9.520e-3029.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1433contigF-serratus_M_contig1433:35812..41438 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_003110.1
Exons5
Model size3544
Cds size1764
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929419.4249177-UTR-F-serratus_M_contig1433:35811..361321622929419.4249177-UTR-F-serratus_M_contig1433:35811..36132Fucus serratus maleUTRF-serratus_M_contig1433 35812..36132 +
1690962843.2748003-UTR-F-serratus_M_contig1433:35811..361321690962843.2748003-UTR-F-serratus_M_contig1433:35811..36132Fucus serratus maleUTRF-serratus_M_contig1433 35812..36132 +
1622929419.5259056-UTR-F-serratus_M_contig1433:39979..414381622929419.5259056-UTR-F-serratus_M_contig1433:39979..41438Fucus serratus maleUTRF-serratus_M_contig1433 39980..41438 +
1690962843.3242676-UTR-F-serratus_M_contig1433:39979..414381690962843.3242676-UTR-F-serratus_M_contig1433:39979..41438Fucus serratus maleUTRF-serratus_M_contig1433 39980..41438 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929419.4357128-CDS-F-serratus_M_contig1433:36132..361951622929419.4357128-CDS-F-serratus_M_contig1433:36132..36195Fucus serratus maleCDSF-serratus_M_contig1433 36133..36195 +
1690962843.2830012-CDS-F-serratus_M_contig1433:36132..361951690962843.2830012-CDS-F-serratus_M_contig1433:36132..36195Fucus serratus maleCDSF-serratus_M_contig1433 36133..36195 +
1622929419.447985-CDS-F-serratus_M_contig1433:36888..370721622929419.447985-CDS-F-serratus_M_contig1433:36888..37072Fucus serratus maleCDSF-serratus_M_contig1433 36889..37072 +
1690962843.2907412-CDS-F-serratus_M_contig1433:36888..370721690962843.2907412-CDS-F-serratus_M_contig1433:36888..37072Fucus serratus maleCDSF-serratus_M_contig1433 36889..37072 +
1622929419.469041-CDS-F-serratus_M_contig1433:37723..378691622929419.469041-CDS-F-serratus_M_contig1433:37723..37869Fucus serratus maleCDSF-serratus_M_contig1433 37724..37869 +
1690962843.2986677-CDS-F-serratus_M_contig1433:37723..378691690962843.2986677-CDS-F-serratus_M_contig1433:37723..37869Fucus serratus maleCDSF-serratus_M_contig1433 37724..37869 +
1622929419.4859824-CDS-F-serratus_M_contig1433:38200..383951622929419.4859824-CDS-F-serratus_M_contig1433:38200..38395Fucus serratus maleCDSF-serratus_M_contig1433 38201..38395 +
1690962843.3069665-CDS-F-serratus_M_contig1433:38200..383951690962843.3069665-CDS-F-serratus_M_contig1433:38200..38395Fucus serratus maleCDSF-serratus_M_contig1433 38201..38395 +
1622929419.5032356-CDS-F-serratus_M_contig1433:38803..399791622929419.5032356-CDS-F-serratus_M_contig1433:38803..39979Fucus serratus maleCDSF-serratus_M_contig1433 38804..39979 +
1690962843.3156226-CDS-F-serratus_M_contig1433:38803..399791690962843.3156226-CDS-F-serratus_M_contig1433:38803..39979Fucus serratus maleCDSF-serratus_M_contig1433 38804..39979 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1433.3104.1prot_F-serratus_M_contig1433.3104.1Fucus serratus malepolypeptideF-serratus_M_contig1433 36133..39979 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1433.3104.1

>prot_F-serratus_M_contig1433.3104.1 ID=prot_F-serratus_M_contig1433.3104.1|Name=mRNA_F-serratus_M_contig1433.3104.1|organism=Fucus serratus male|type=polypeptide|length=588bp
MEHIAFSEIAHLDVESALFAQRLRAGSITASSESVVGSEDPAIRVKRLRE
IERKRREDAKRKAKAVGAAGAHNQARGQPASQDEQPCFTGPCKNKPCVQR
NDVEGKLLARRGKIKLELGRKVKRFHSLQRTVVEKEKQRDEASAESISLK
NAVEIALEGMEDRQRRTQKVNEEIRQVTGELSPLEVEFRNLRKRHQEAVQ
PVMPLPRGLVSSNSVEWPTSYGKPFTPDGLTVTFIAVGRSRRQKSGKQEV
IADSTDGGGGLSNHRNPSLAWQPPSCFDDDPLCDEPHNARIAAWKYPSRA
STTSALAREHPGKFGRWGTEVREQWSCCLWEKEENTNKNSRRPSSSVAGG
CEIAPPPSIPGGMTTSDDVHLVLRRSTEITGHAGERFGEGCDVTACEAFE
TRLTTNDAGRRMERRPRELSGWSYTNKQCSEAVRSPIRGRPQTTLTKIGM
EALTPSSRCAENTFYRRDRGDRTHDGSCRSRGFTARYPVRAWPDSAPSKM
KMSNDHLAVRRVSSLTALRQARAKAGWQLVRVGPSTNNDYTQICANEEDG
LVTRSGWSRQSQESLLHVGSVSVYSQAENTEKPAGSA*
back to top

mRNA from alignment at F-serratus_M_contig1433:35812..41438+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1433.3104.1 ID=mRNA_F-serratus_M_contig1433.3104.1|Name=mRNA_F-serratus_M_contig1433.3104.1|organism=Fucus serratus male|type=mRNA|length=5627bp|location=Sequence derived from alignment at F-serratus_M_contig1433:35812..41438+ (Fucus serratus male)
ATGCAGGGATACTACCGTGTTCTATGTTACGTCATACGTATATTTTTTAT
AGTCTAACCTATTTGCCCTGTATCCTCGGGAAAAGTTGGCAGGATCCTCA
GGAGCAGCAGCGGATGTGTCTGAGACGCTATGCATCGTGATCGTGTTAAA
TCAGCCTTGTTTGGCGAGCATAAGACAAGCGTCGGGATCAAACTACGTGC
AACACACAATGCTGCTGTACGTCTGATGTTGTGGCGGTTCGATCGGGAGT
CCCTGAAGTTAACACCGTAATTACGGTACAGCACGGAGTAACAAGACTCT
GCACTACACTTTTCAGTCGAAATGGAGCACATTGCGTTCAGCGAAATTGC
GCACCTCGACGTGGAGAGTGCATTGTTTGCTCAGGTAAGCGAGGCGATAG
AGTAACGCGGTCGCTGGATCTTGGTGGTTGATCCGCTAAATAGGTTGCGT
GTGGACTGTATATCGATTCTCAAAATTAAAAAGGCTACTTGTACTCTGTA
CATGATTGAGGTTTCTGCTCTAACGTAATACACGATTTGCAGGACCAGAG
CGTCAGACTTCTCACCATAATACTGCCTACTGAACAAGCTAGTTGTAGTC
CGATCTCCGGCGCGGTTATGATTATAGGGATCTCAGTGATCCCTGTAGAC
CCCGGAGTATGTTATTAAAACATGTTATACGAACCAGATAGGTTGAGTTT
TCCACGAGTTTGCAGTATCAAGACGCAATTTTCACGCAGAGTCCAAGGAG
TTTCCGATTCATTTTCGACGAGATTTTGGTGCTGCGTGTGCATTGTTGCC
GGAAAAATATCATATCGGGTTGAACCCGACAACGTATGGAGCATTATACA
CACCAATTTCACCTCAAACAGTATGCTTGGTCAAATAAGACTACATGCCA
AAGTACCTTCAAGCAAGGTCAAGTACTTGGGCTCGCTGAGGGCTCATCGC
CTGGCACGCGACAAATGCGAATCGTCACTTCAACGCAACGGAAGCTTCCT
GAAAAAAGTTGTTGCAGCACAGCATGCAACATGATACCCCTCTGTTGCTC
GCGCCACTTGCGCCAATAATGCACCAGAGACTCCGCGCTGGATCGATTAC
CGCATCGAGCGAGTCCGTGGTTGGATCAGAGGACCCTGCCATTCGTGTCA
AACGCTTAAGAGAAATCGAGCGGAAAAGACGAGAGGACGCAAAGCGTAAA
GCGAAGGCGGTGGGCGCGGCGGGTGCACACAACCAAGCTCGTGGACAACC
TGCATCGCAAGGTTAGAAGTGTCTCACGATGATGAATATTGGCATGGGGG
AAAGACTCAGACGATTATTGATCGGGAGAAAACCTTTTTCAATTGCCACA
CTATAGGTTTACTGGACTGCCGCAATGCACGGCCACAACTGAGAGAACAA
AAATGTGTATGGATCATGCACTACGCATCCGCCTACCTCAGCTATATAAC
TGCCGTACGTTATAATAATCTTTGACGTCTTCCATGGGCTGTCGGTCAGT
TCATCAGTGGGTAAAACTATAGCAGGTCGGAGAAAGGACGAGTGTTGGGG
GGGGGCGCACACATAATGGAAAAGCGCGCGGTTACATAATAGATGCATCA
ATGATATCAGCAACGTGGTAGGTAGAGGGGAGGAGGGGGGAGGTTAAGGG
AACGCGCAAGCGTGGATACATCTCGTCAACCGAGGCGACTACATGACATT
TCTCCGCATATGTTTATGTGCGCGGATTCTTGAAACGAAATAAAAATCCG
AAACCACTTCAAGGCAAGAAAGTTTGAAAACATACTACATACTATGTTTC
ATTTGGTCGTGCAGATGTTTTTTCCTTACATCCACTGGTACTGCATACAT
ACAACATGTCCTATATTCATGCGCGCGCGACGGAACCGAACCTATGTTGT
TGAACCAAACAGATGAGCAACCTTGCTTCACTGGGCCGTGCAAGAACAAA
CCGTGCGTCCAACGCAATGACGTGGAAGGGAAGCTATTGGCTCGTCGGGG
AAAAATAAAATTGGAGCTCGGGCGCAAAGTTAAGAGATTCCACAGCCTTC
AGCGAACGGTGAGACGATCGCGGGAGCAAACTACAAACGACAAAGGCACG
AAAGACAATCAAGTGCCACCCGACAGCATGCGCGCAATAGGGATACTGTC
TTTGGCATCGATCGATGGGCTATTTCCGAGATAGTTGATGGCAGGTTCCT
TCGCTTGACCTTCACGCGAATTCCTACTATCAGTTCTACCTTGCCTTGCG
TGACGACGACAAGTGTGATGGTGAGGTAGCTTGAGGCTGACAGGCACCAA
ACCTTGGCAGTTCGTTCGTGGGAGCCATCAAGAAGACTTCCAAAGCCAGC
GTTCGTGCGCTCTGAACAACGCTGCGTCGACCGTCGCAGGTCGTCGAAAA
GGAGAAACAAAGGGACGAGGCCTCAGCGGAAAGTATATCGCTAAAAAATG
CCGTGGAGATCGCGCTGGAAGGAATGGAGGACCGACAACGGCGCACGCAA
AAAGTGAACGAGGAAATTCGTCAAGTTACCGGGGAACTTAGCCCCCTAGA
GGTGGAATTTCGAAATCTTCGGAAGCGGCATCAGGTGGGGCTAACTGCCG
TATTTTCCCTAATTTCTGCTAGCCGTTGAGACGTACGTGTGATGCAAGGA
TTACACCTCGTTTGTGCGGTGTCCAATCGAGACAGTGACCCATTAGGCCG
TAACTACATCTACTACTAACTATGCGTGGCAATCCATCTTACGATGTTTG
CTGGCATGGTGCTGATCGGCTCTGTGATAAGTTTAGAGATGTTCTCGCTC
GTGTTGATCGGTCACGTAGTATCACTGATTGGACGTAAATAATTCGGAGG
CGTTTCTATCGGTTTTGCACGGCAGCACATCCGCCTGGCTCTGCTCATTT
AATGCCGTCCCGATCTGTTTCGCTGTCGATTTTTGCTATAATAGCATGAT
CCGTTTGAACTCCCCCCCGAAACGCGCCCGGCGTCATAACAGGAAGCGGT
ACAGCCAGTCATGCCGCTTCCTCGAGGACTTGTCTCTAGCAACTCCGTTG
AGTGGCCGACGTCATATGGTAAGCCTTTTACTCCTGATGGTCTCACGGTG
ACATTCATTGCTGTCGGGAGAAGCCGCAGACAGAAAAGCGGCAAGCAGGA
GGTGATAGCGGACAGCACAGATGGAGGTGGCGGCCTAAGCAATCATCGTA
ATCCTTCCCTGGCCTGGCAACCTCCTTCATGTTTTGATGATGACCCTCTG
TGCGATGAACCGCACAATGCACGAATAGCAGCCTGGAAGTACCCCTCGCG
AGCATCAACGACCTCAGCGCTTGCCAGAGAACACCCCGGGAAGTTCGGAC
GTTGGGGGACGGAGGTGCGAGAGCAATGGTCGTGCTGCTTGTGGGAGAAA
GAAGAAAATACAAACAAAAACAGCCGTAGACCGAGTAGTAGTGTGGCTGG
GGGATGCGAGATTGCCCCCCCCCCTTCTATCCCCGGCGGGATGACCACAT
CTGACGATGTTCACCTCGTGTTGCGGCGGTCGACCGAAATTACGGGGCAC
GCGGGGGAGCGCTTCGGCGAAGGGTGCGACGTTACCGCTTGTGAGGCATT
TGAGACACGGCTAACAACAAACGATGCCGGAAGACGGATGGAACGGCGAC
CAAGGGAATTGAGCGGTTGGAGCTATACCAACAAGCAGTGTTCCGAAGCG
GTTCGGAGTCCCATTCGAGGCCGTCCTCAGACCACTCTAACAAAAATAGG
GATGGAAGCGTTAACCCCTAGTTCGAGGTGTGCTGAGAATACATTTTATC
GACGGGACCGTGGTGATCGCACTCACGATGGCAGCTGTAGAAGTCGTGGC
TTTACGGCGAGATATCCCGTTCGTGCATGGCCTGATTCAGCGCCATCAAA
AATGAAAATGTCTAACGACCACCTGGCGGTCAGGCGGGTCTCCTCTCTCA
CGGCGTTACGACAAGCGCGTGCGAAGGCAGGCTGGCAGCTTGTACGTGTT
GGCCCCTCTACCAACAATGATTACACTCAAATCTGCGCCAACGAAGAAGA
TGGTTTGGTAACAAGGAGCGGTTGGTCCAGGCAAAGCCAGGAATCTCTTC
TTCACGTGGGATCGGTATCCGTGTACTCTCAAGCAGAGAACACAGAGAAG
CCTGCAGGCAGCGCGTGATAGAGTTGAAGTTTTTCTGTGTACGCTGTCCT
GATGTGAGGCCGATGTTGCCGTCGACGCGATTTCTTGTTTGATGTTGGAT
TGATACCTGATACCCCACAAATACCCCACACAAAGTCGGAAACACGCCTC
CACGGGTACCACTTCTTGAGGCGTATTTCTACACGCCAGGAACTATACTA
ATCGTTCGGCCCCTCGAACACCCAAGACGGTGAAATGTAGCGAAACTATT
TGTAAGACACATATAATGATATTATGGGTGTTATTACGTACGACAGCAAG
AAATCCTTGCGAAAGCTTTTTAGATAAATACTGTATTCATTAATGAATAC
CGTATGCCATTTTGCCGTTCCCTTGCATAATCTCGTTATTAACAGTACTA
AAATTAAACAGGTTTCGGCAGCCAGCTGTGCAGCGATACCATACATAACC
GCCTCGTACTTCCTAGATTATGTTGAATCTGATCAGAGAACTTGAGATCA
GAGATGGCTTGAGATTCCCGAAGAGCTCGGCACAGAATCGTACCACTTAT
AGAGCTCCATCGAAGCACTGTCACAAAATATATTTTTGCGGAGCTAAATT
TGTATTAATACTGTCGTAGCTGTTGTTTACCCTCTGGGTAGCGACCAGAC
TACCGACAACTAGCAGTGTCTCTCATGTCCTTGGTAAGCTGCCATAGCTC
GTGGGGAAATAAAGACAGGTGTTTCAGTAGCTCACCCTGTGTGCCACTCC
TATTCCAGGGAATGGCAGCAGATGAGAGAGCAGTTCTTGCTTTGGCTTTG
GATAGCGTGTGGTGGCAGGCTTTTTCCAGGTTGGACTTATAGCGCGTCAT
AGCAGTTGTTATTATTACTGATATCATCGTACCTGTACAGAGAGAGGGGG
ACATCCACTGCAATGTTGGATCCTTGGGGCCGGAGGAAGAGCGACGGATT
TTGTTTCAATTTGGTCTAGTAGCTACATAATATCCTGCCGTAAAAGCCCC
CTTTGCTTTTTATTTGAGGTGAAGGCTTCACCTAGAAGTGACGAGGTGGT
GTATGGAAGCGAGCTGATGGTAGAAGCAGCAGTTTTATTGTTTATAAAAC
GGTAAATAATAGTTGGTCCTACTACAACAACAGAAGACCCTGAAGATTCG
GATGTGTAGTCAACATTTGGTCGGCTTGGTTTATTTGTACGTTTGGTTTT
GTATCTATTTGTAAGGACCAGGTCCTCTCCGGTTCTCTCTTTTCCTTCCT
TTCTAAGTAGTACTAGTACTTCATGCAGTATTATCATGATATAGCTCTAA
AAAGGTACCAGGGTAATGTCAATATGATTTATCATATTTCGACGTCGGCT
CTGTTTGGTTTGACTCCGCCTCTGATTGCGTTTTCCCTATTCCCTGCACG
AGAGAAAACTGGCATTGAGCAGAGTAAGGCTGACCCGTGTGTGTTCCGTC
AGGGGGCGGATGGGGAGGTTGCCCTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1433:35812..41438+

>mRNA_F-serratus_M_contig1433.3104.1 ID=mRNA_F-serratus_M_contig1433.3104.1|Name=mRNA_F-serratus_M_contig1433.3104.1|organism=Fucus serratus male|type=CDS|length=3528bp|location=Sequence derived from alignment at F-serratus_M_contig1433:35812..41438+ (Fucus serratus male)
ATGGAGCACATTGCGTTCAGCGAAATTGCGCACCTCGACGTGGAGAGTGC
ATTGTTTGCTCAGATGGAGCACATTGCGTTCAGCGAAATTGCGCACCTCG
ACGTGGAGAGTGCATTGTTTGCTCAGAGACTCCGCGCTGGATCGATTACC
GCATCGAGCGAGTCCGTGGTTGGATCAGAGGACCCTGCCATTCGTGTCAA
ACGCTTAAGAGAAATCGAGCGGAAAAGACGAGAGGACGCAAAGCGTAAAG
CGAAGGCGGTGGGCGCGGCGGGTGCACACAACCAAGCTCGTGGACAACCT
GCATCGCAAGAGACTCCGCGCTGGATCGATTACCGCATCGAGCGAGTCCG
TGGTTGGATCAGAGGACCCTGCCATTCGTGTCAAACGCTTAAGAGAAATC
GAGCGGAAAAGACGAGAGGACGCAAAGCGTAAAGCGAAGGCGGTGGGCGC
GGCGGGTGCACACAACCAAGCTCGTGGACAACCTGCATCGCAAGATGAGC
AACCTTGCTTCACTGGGCCGTGCAAGAACAAACCGTGCGTCCAACGCAAT
GACGTGGAAGGGAAGCTATTGGCTCGTCGGGGAAAAATAAAATTGGAGCT
CGGGCGCAAAGTTAAGAGATTCCACAGCCTTCAGCGAACGATGAGCAACC
TTGCTTCACTGGGCCGTGCAAGAACAAACCGTGCGTCCAACGCAATGACG
TGGAAGGGAAGCTATTGGCTCGTCGGGGAAAAATAAAATTGGAGCTCGGG
CGCAAAGTTAAGAGATTCCACAGCCTTCAGCGAACGGTCGTCGAAAAGGA
GAAACAAAGGGACGAGGCCTCAGCGGAAAGTATATCGCTAAAAAATGCCG
TGGAGATCGCGCTGGAAGGAATGGAGGACCGACAACGGCGCACGCAAAAA
GTGAACGAGGAAATTCGTCAAGTTACCGGGGAACTTAGCCCCCTAGAGGT
GGAATTTCGAAATCTTCGGAAGCGGCATCAGGTCGTCGAAAAGGAGAAAC
AAAGGGACGAGGCCTCAGCGGAAAGTATATCGCTAAAAAATGCCGTGGAG
ATCGCGCTGGAAGGAATGGAGGACCGACAACGGCGCACGCAAAAAGTGAA
CGAGGAAATTCGTCAAGTTACCGGGGAACTTAGCCCCCTAGAGGTGGAAT
TTCGAAATCTTCGGAAGCGGCATCAGGAAGCGGTACAGCCAGTCATGCCG
CTTCCTCGAGGACTTGTCTCTAGCAACTCCGTTGAGTGGCCGACGTCATA
TGGTAAGCCTTTTACTCCTGATGGTCTCACGGTGACATTCATTGCTGTCG
GGAGAAGCCGCAGACAGAAAAGCGGCAAGCAGGAGGTGATAGCGGACAGC
ACAGATGGAGGTGGCGGCCTAAGCAATCATCGTAATCCTTCCCTGGCCTG
GCAACCTCCTTCATGTTTTGATGATGACCCTCTGTGCGATGAACCGCACA
ATGCACGAATAGCAGCCTGGAAGTACCCCTCGCGAGCATCAACGACCTCA
GCGCTTGCCAGAGAACACCCCGGGAAGTTCGGACGTTGGGGGACGGAGGT
GCGAGAGCAATGGTCGTGCTGCTTGTGGGAGAAAGAAGAAAATACAAACA
AAAACAGCCGTAGACCGAGTAGTAGTGTGGCTGGGGGATGCGAGATTGCC
CCCCCCCCTTCTATCCCCGGCGGGATGACCACATCTGACGATGTTCACCT
CGTGTTGCGGCGGTCGACCGAAATTACGGGGCACGCGGGGGAGCGCTTCG
GCGAAGGGTGCGACGTTACCGCTTGTGAGGCATTTGAGACACGGCTAACA
ACAAACGATGCCGGAAGACGGATGGAACGGCGACCAAGGGAATTGAGCGG
TTGGAGCTATACCAACAAGCAGTGTTCCGAAGCGGTTCGGAGTCCCATTC
GAGGCCGTCCTCAGACCACTCTAACAAAAATAGGGATGGAAGCGTTAACC
CCTAGTTCGAGGTGTGCTGAGAATACATTTTATCGACGGGACCGTGGTGA
TCGCACTCACGATGGCAGCTGTAGAAGTCGTGGCTTTACGGCGAGATATC
CCGTTCGTGCATGGCCTGATTCAGCGCCATCAAAAATGAAAATGTCTAAC
GACCACCTGGCGGTCAGGCGGGTCTCCTCTCTCACGGCGTTACGACAAGC
GCGTGCGAAGGCAGGCTGGCAGCTTGTACGTGTTGGCCCCTCTACCAACA
ATGATTACACTCAAATCTGCGCCAACGAAGAAGATGGTTTGGTAACAAGG
AGCGGTTGGTCCAGGCAAAGCCAGGAATCTCTTCTTCACGTGGGATCGGT
ATCCGTGTACTCTCAAGCAGAGAACACAGAGAAGCCTGCAGGCAGCGCGT
GAGAAGCGGTACAGCCAGTCATGCCGCTTCCTCGAGGACTTGTCTCTAGC
AACTCCGTTGAGTGGCCGACGTCATATGGTAAGCCTTTTACTCCTGATGG
TCTCACGGTGACATTCATTGCTGTCGGGAGAAGCCGCAGACAGAAAAGCG
GCAAGCAGGAGGTGATAGCGGACAGCACAGATGGAGGTGGCGGCCTAAGC
AATCATCGTAATCCTTCCCTGGCCTGGCAACCTCCTTCATGTTTTGATGA
TGACCCTCTGTGCGATGAACCGCACAATGCACGAATAGCAGCCTGGAAGT
ACCCCTCGCGAGCATCAACGACCTCAGCGCTTGCCAGAGAACACCCCGGG
AAGTTCGGACGTTGGGGGACGGAGGTGCGAGAGCAATGGTCGTGCTGCTT
GTGGGAGAAAGAAGAAAATACAAACAAAAACAGCCGTAGACCGAGTAGTA
GTGTGGCTGGGGGATGCGAGATTGCCCCCCCCCCTTCTATCCCCGGCGGG
ATGACCACATCTGACGATGTTCACCTCGTGTTGCGGCGGTCGACCGAAAT
TACGGGGCACGCGGGGGAGCGCTTCGGCGAAGGGTGCGACGTTACCGCTT
GTGAGGCATTTGAGACACGGCTAACAACAAACGATGCCGGAAGACGGATG
GAACGGCGACCAAGGGAATTGAGCGGTTGGAGCTATACCAACAAGCAGTG
TTCCGAAGCGGTTCGGAGTCCCATTCGAGGCCGTCCTCAGACCACTCTAA
CAAAAATAGGGATGGAAGCGTTAACCCCTAGTTCGAGGTGTGCTGAGAAT
ACATTTTATCGACGGGACCGTGGTGATCGCACTCACGATGGCAGCTGTAG
AAGTCGTGGCTTTACGGCGAGATATCCCGTTCGTGCATGGCCTGATTCAG
CGCCATCAAAAATGAAAATGTCTAACGACCACCTGGCGGTCAGGCGGGTC
TCCTCTCTCACGGCGTTACGACAAGCGCGTGCGAAGGCAGGCTGGCAGCT
TGTACGTGTTGGCCCCTCTACCAACAATGATTACACTCAAATCTGCGCCA
ACGAAGAAGATGGTTTGGTAACAAGGAGCGGTTGGTCCAGGCAAAGCCAG
GAATCTCTTCTTCACGTGGGATCGGTATCCGTGTACTCTCAAGCAGAGAA
CACAGAGAAGCCTGCAGGCAGCGCGTGA
back to top