mRNA_F-serratus_M_contig1431.3098.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 113 bits (282), Expect = 8.850e-27 Identity = 56/111 (50.45%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 1 ECFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
EC+ +AC GG+T S +YCL+GYEGPYC+VCS Y A LG +C +C DR SI + ++V +A SY VS E G +GVV+ VP+Q VKIVIV WQI+TQ
Sbjct: 539 ECYNADACLGGVTGSESYCLEGYEGPYCAVCSGGYTARLGMACSKCSDRAGSIALGVSVSVAGLLFTVALVSYAVSGESEGRARGVVERTGRFVPLQSVKIVIVAWQILTQ 649
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 112 bits (280), Expect = 1.670e-26 Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 1
Query: 4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
C+ EAC GG+T + YCL+GY+GPYC+VCS + A GF+CREC D IV+A LAV + SY+ S + G QG+V+ + +P+Q VKIV+V WQ++TQ
Sbjct: 983 CYHPEACLGGVTGTAGYCLEGYQGPYCAVCSHGFSAQFGFTCRECSDSAGGIVLAVALAVAGIFAAVVVVSYVTSGKRNGRGQGIVERVALYIPLQSVKIVVVAWQVVTQ 1092
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 108 bits (271), Expect = 2.750e-25 Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = 1
Query: 4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
C+ +AC GG+T + YCL+GYEGPYC++CS+ Y A + F+CR C D I +A LAV+ +A SY+ S E G +G+V+ + +P+Q VKIV+V WQI+TQ
Sbjct: 1174 CYHADACLGGVTGTSGYCLEGYEGPYCAICSEGYSAQMSFTCRTCSDNAGGIALAAALAVVGLVLLVAVVSYVSSGERNGKGRGIVERVGRYIPLQSVKIVVVAWQIMTQ 1283
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: A0A6H5JY65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY65_9PHAE) HSP 1 Score: 105 bits (262), Expect = 4.510e-24 Identity = 50/112 (44.64%), Postives = 70/112 (62.50%), Query Frame = 1
Query: 4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQVS 339
C+ +AC GG+T+ +C +GYEGPYCSVCS+ Y L F+C EC D I I V+ V +A +LVS E G +GV+ + R+P+Q +KIV+V+WQI+TQ S
Sbjct: 1338 CYNEDACVGGMTNDPAFCQRGYEGPYCSVCSEGYSMSLAFTCTECVDDHGGIAIMVVVGVFVLGAAIALCMHLVSGEMEGARRGVIHRVVKRLPLQSIKIVVVVWQILTQFS 1449
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 105 bits (261), Expect = 6.110e-24 Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 1
Query: 4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
C+ +AC GG+T + YCL+ YEGPYCS+CS Y + LG+SC +CF R+ IV A +AVLA + Y++S E V++ + VP+Q VKIVIV WQI+TQ
Sbjct: 990 CYNADACLGGVTGTAGYCLESYEGPYCSICSDGYASNLGYSCSKCFSRSGGIVFAVGMAVLALFVAVVVIMYIMSGEAGERRMYVLERLGWYVPLQSVKIVIVSWQILTQ 1099
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D7G5Y7_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Y7_ECTSI) HSP 1 Score: 105 bits (261), Expect = 6.190e-24 Identity = 53/111 (47.75%), Postives = 72/111 (64.86%), Query Frame = 1
Query: 4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAE-GRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
C+ AC G+T+S CL GYEGPYCS+CS Y AGL F C EC D I++A+ LAV+A +A SY+VS + G G+ +G V+ + +P+Q KIV+V WQI+TQ
Sbjct: 1630 CYNANACLAGVTNSSGSCLDGYEGPYCSICSDGYTAGLSFKCSECSDSAGGIILASFLAVVALLVAVAVVSYVVSDKVGEGS-RGTVERLGRYIPLQSAKIVVVSWQILTQ 1739
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 102 bits (255), Expect = 3.880e-23 Identity = 48/110 (43.64%), Postives = 72/110 (65.45%), Query Frame = 1
Query: 4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
C+ +AC GGIT + YC++GYEGPYC++CS +Y A LGF+C +C +R I++AT LAV+ +A SY+ T + H+K +P+Q +KI++V WQI+TQ
Sbjct: 580 CYNVDACVGGITGATEYCVEGYEGPYCAICSDDYSAQLGFTCSKCPNRAGGILLATALAVIGLFTVVAVVSYVAWRVDPNTGCAMAGHLKRYLPLQTLKILVVAWQIVTQ 689
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: A0A6H5K7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z1_9PHAE) HSP 1 Score: 102 bits (253), Expect = 7.350e-23 Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
C+ +AC GG+T + YCL+ YEGPYCS+CS Y + LG+SC +CF R+ I A LAV+A + Y++S E V + + VP+Q VKIVIV WQI+TQ
Sbjct: 1050 CYNADACLGGVTGTAGYCLESYEGPYCSICSNGYASNLGYSCSKCFSRSGGIAFAVGLAVVAVFVAVVVIRYIMSGEAGERRIYVFERLGWYVPLQSVKIVIVSWQIVTQ 1159
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 100 bits (250), Expect = 1.860e-22 Identity = 51/110 (46.36%), Postives = 65/110 (59.09%), Query Frame = 1
Query: 4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTVSIVIATVLAVLASAGGLAAASYLVSAEGRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
C+ ++AC GG+T YCL+GYEGPYC+VCS Y L F+C C I +A VLAV+ A ASY +S GVV + +P+Q VKIVIV WQI+TQ
Sbjct: 819 CYNSDACLGGVTGRAGYCLKGYEGPYCAVCSDGYTTELAFACTRCSGGAGRIALAAVLAVVVLCVAFAVASYAMSGRVGDVRSGVVARLGQYIPLQSVKIVIVAWQILTQ 928
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 100 bits (250), Expect = 1.870e-22 Identity = 56/112 (50.00%), Postives = 71/112 (63.39%), Query Frame = 1
Query: 4 CFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDR-TVSIVIATVLAVLASAGGLAAASYLVSAE-GRGTVQGVVDHIKHRVPMQPVKIVIVMWQIITQ 333
C+ EAC GG+T + YCL+GYEGPYCSVCS Y LGF C +C ++ T IVI VLAV + A SY+ S E G GT G ++ + +P+Q VKIVI WQI+TQ
Sbjct: 1184 CYHAEACLGGVTATSGYCLEGYEGPYCSVCSNGYSEQLGFVCSKCPEKNTGGIVILVVLAVGTTIVLAAIYSYVTSGEDGMGTGCGWIERVTRYIPLQSVKIVIAAWQILTQ 1295 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1431.3098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1431.3098.1 >prot_F-serratus_M_contig1431.3098.1 ID=prot_F-serratus_M_contig1431.3098.1|Name=mRNA_F-serratus_M_contig1431.3098.1|organism=Fucus serratus male|type=polypeptide|length=114bp ECFLTEACAGGITDSLNYCLQGYEGPYCSVCSKNYVAGLGFSCRECFDRTback to top mRNA from alignment at F-serratus_M_contig1431:141452..142036- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1431.3098.1 ID=mRNA_F-serratus_M_contig1431.3098.1|Name=mRNA_F-serratus_M_contig1431.3098.1|organism=Fucus serratus male|type=mRNA|length=585bp|location=Sequence derived from alignment at F-serratus_M_contig1431:141452..142036- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1431:141452..142036- >mRNA_F-serratus_M_contig1431.3098.1 ID=mRNA_F-serratus_M_contig1431.3098.1|Name=mRNA_F-serratus_M_contig1431.3098.1|organism=Fucus serratus male|type=CDS|length=684bp|location=Sequence derived from alignment at F-serratus_M_contig1431:141452..142036- (Fucus serratus male)back to top |