mRNA_F-serratus_M_contig143.3086.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3086.1
Unique NamemRNA_F-serratus_M_contig143.3086.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:711139..718166 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size505
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.213251-CDS-F-serratus_M_contig143:711138..7112411622929412.213251-CDS-F-serratus_M_contig143:711138..711241Fucus serratus maleCDSF-serratus_M_contig143 711139..711241 -
1690962839.9502058-CDS-F-serratus_M_contig143:711138..7112411690962839.9502058-CDS-F-serratus_M_contig143:711138..711241Fucus serratus maleCDSF-serratus_M_contig143 711139..711241 -
1622929412.228619-CDS-F-serratus_M_contig143:717765..7181661622929412.228619-CDS-F-serratus_M_contig143:717765..718166Fucus serratus maleCDSF-serratus_M_contig143 717766..718166 -
1690962839.9595487-CDS-F-serratus_M_contig143:717765..7181661690962839.9595487-CDS-F-serratus_M_contig143:717765..718166Fucus serratus maleCDSF-serratus_M_contig143 717766..718166 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3086.1prot_F-serratus_M_contig143.3086.1Fucus serratus malepolypeptideF-serratus_M_contig143 711139..718166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3086.1

>prot_F-serratus_M_contig143.3086.1 ID=prot_F-serratus_M_contig143.3086.1|Name=mRNA_F-serratus_M_contig143.3086.1|organism=Fucus serratus male|type=polypeptide|length=168bp
SNRYYAQQEVERELGLERGEIGKFYRTMHHGEGGDKKKATTLALLKEAGV
FRIKRTKPKGQSTPYWIAFAGKGPAKRHPPPFFMSDAEHVFEFKDYTSHP
AASVESDMDLEKAANEADDTPSGHTPPSCTVMARSRRLMVDPPPAAGGAC
ASQNKGQPEVQTEEEMRT
back to top

mRNA from alignment at F-serratus_M_contig143:711139..718166-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3086.1 ID=mRNA_F-serratus_M_contig143.3086.1|Name=mRNA_F-serratus_M_contig143.3086.1|organism=Fucus serratus male|type=mRNA|length=7028bp|location=Sequence derived from alignment at F-serratus_M_contig143:711139..718166- (Fucus serratus male)
TCCAACAGATACTATGCTCAACAGGAGGTGGAACGTGAGTTGGGGTTGGA
GCGAGGAGAAATTGGCAAGTTTTACCGGACCATGCATCATGGAGAAGGAG
GTGACAAGAAGAAGGCAACAACCTTGGCCCTTCTCAAAGAAGCCGGCGTC
TTTCGGATCAAGAGAACGAAGCCAAAAGGGCAGAGTACGCCGTACTGGAT
TGCCTTTGCTGGCAAAGGCCCAGCGAAGCGACACCCTCCGCCCTTCTTTA
TGTCGGACGCCGAGCATGTTTTTGAGTTCAAGGACTATACCTCCCACCCG
GCGGCGTCTGTCGAGTCGGATATGGACTTGGAGAAAGCGGCCAACGAGGC
GGACGACACGCCATCGGGACACACGCCGCCGAGCTGCACGGTCATGGCAC
GGTAAGTAAGTACTGCAGCGCGAAAACGTTCCCTCCCGCTTTCTGTGACG
GCGTCCGTCTATACCAGGTCTATACCGTCAATAGCCACCACCAGTTCAGT
CCCGAGTTGGACAGGCTAAACAATTGCGTACCGATGACGTTCACCGCCTA
GAGTCCACTACCGGCACAGGGACTTCCCACGTAGTTCGAGTAACTGGTGC
TGCTGCTCATTTCCTGCACCTCTCTTTTCCCACGCCCACTATTAATAGTC
TATTGGTACCTACAAACTAACAGTGGTAGTGGATAGTCAATTTTTGTTTT
TGCTTTTTCACTTATAGTCTCGTATTACTCCCACTTAATAGTCAATTATC
CTGGACCCAACGTTACAACGTTTAATTGCCATGAAGAGGTTTTGTATTTG
CAGCCTTTGATCCCAAAACGTTTTGACATTTTTTCTTCTGACTGGAGGAT
GCTCAGAAGGTATAGGCGCGTTCTGGTTTTTCTTTAAATACTGCAACGTT
GCCATCCTCACCGTGGACACTAATAGTTATTATTATTTATTGATAAGGAT
CTTCCCCGCTTCCCAGGTTCTTGCCTAAGAGATTTTATGACGATGTATGT
TCAGTGCTCTTCATCACACTTTGATTGGTTGATTGATTGACTGATTTTTG
ATTGAATTATCATATAAGCTGTTGTCAAAAATTCAGCGCGCGTGGTCACA
AGGTAGAAAAACACCATCTGGAAGGGAAAAACATACGGCGTACAGTATAC
AGTACTCTTTCCAAACAGAGAGAAGCGGTAATGGTACAAAAAATACTCGG
AAAAAGCGACATCTCCAAAAAAAAAAAAAGGGACGAAACAGAAACGAGAC
TCGTAGGCCACTTCTTATGCTGCTAAAAAAACGGTATCAGACAACGGCTT
TTCTGATACAATTTTCCAACAGGATTTTTCCAAGCACTAGTTACTACTGG
TAGTTCTTATCAAAATAAGCAGGCCAATAAAAAAGTAGTTTTCAACGGTC
ACTACTAATAGGAGGCGTCTGCACTTTCTACTCTATTGGAGAGTCTGTCC
AATGTGTACACAGTCTGCTGTATGTTTTAGATAATGTTGTTACCAACAAC
ACGTCGCGAAGGAGTGCTGCATGTAGGCTCATTGCCCAGCTTGTGCACCT
ACTTTCAACTGTGGCGTGGTACAGGACATGGTCTTCGATCGTTTCGGACT
TGCACAACCACACGAATGCATCTCGAAGGCCGCAACGTGCCATGCAAGCA
GTATTGTGCAAGCGGCCTCTAACAAAACATATGATCTGTACCGAGAACGT
AAATGTTGTACGATGCGCATTACAAAGGCTACAGATATGTGTGTTCTCGA
GCCACGATTGCACCTTCCACGTCGAACGAGTGCCAACTGATTGATATGTT
TTATTCTCTGTTTATGGCGTCAATATGCTGCCACCGTGGCCGTCACCGCT
GCGACACAGTCATCCATGCCTGTCTCCAACCAACACGAGGTCTGTGTTTG
AAGGCGGATTTGAAATTTTGCGGCCGTCCGTCCGGGGCACGCCTTCGCCC
ACAACACATGGCGAAGGACTGCCGCTGCGGGTAGGCGCATTACCTTGTTC
ACCTATTTACAACCGTGGCGTGGTACAACACGTGGTCTTCAATCGTTTGG
GGCTTGCACAGCCACACTATTAATAATGCAGCCGGAGGGTCGCAACGTGC
CATGCAAACAATAGTACTACTGTACAAGCGCCCTCCAACAGCATCTAATA
ATCTGTACCGAGGACGTAATAACTGCTGTACGAGGCACGTTACAAAGGCT
ACAGATGTGTTCTCGGAACACGATTGCATCTTCAACATGGAGCAACCCCT
AGAACGAGTGCCAACTGATTGATATTTTGTATTTTTGATTCTCTTCTTGC
GGCGTCGATATGCTGCCACCGCGACTGTCGCCGCTGCAACTTGACATGCG
GTGGGAATTCAACCCCTTTTCTAATAAACGTTTTCTGATATGTGCACGGG
ATCAGAAAATGGTACCAGAAAATGTCACATCGGAAAAGACCTTCTCTGAT
CACGTACGAAGCGGATTTCTGGTCCCAATCAGAAAATCCGTTGTCTGGTA
TTATTTTCAAACAGCTTAAGAAGTGGCCTTAAGGATCAGAGAAAAAGTGA
TCGAAAAAACTTTTTTTTTTATGATGACCACAACATCTAAGTTTTGGGTC
AGAAAAGCACGTTTTCGGATCATGTTTTTTCGTAGGGAGCGCTTTTGGAG
GAGCAGTTGTCAAATACAAATGGAAAAACGGAGGAAGAAATTATCAGAAA
AGTAGTTAGTAGCGATACGAAGGCGTCCCCCGTATGGACGAACGCAAAAG
TTCGAAGCAGCGTTCAAACACAGACCTCGTGTAGGTTGGAGACAGCATGG
ATGGTAGCATATCGACGCCGCAAGCAGAGAATCAAAACTATCAATCAGTT
CGCCTTTGTTCTAGAGGTTGCTCCTCGTTGAAGATGCAATCGTGTTCCGA
GAACACATGTGTAGCCTTTGCAGCGTGCGTCGTCCAGCAATTACGTCCTC
GGTTTAGATTAGATGTTGGAGGCCGCTTGCACAGAAATAACTGTGTGCAT
GGCACGTTGCGGCCTTCGAGCTGCATTCGTGTGGTTGTGCAAGTCCGAAA
CTATGGAAGACCACGTGCTGTACCACGCCAGTGCACGGTTGTAAATAGGT
GCACGAGCAAAAGGCAATGAGCCTACCCGCAGCAGACTTTCGCGAAGTGT
TGTGGGTGACAGTATTTTCTAAAACATACAACAGTAGACTGTTCATACAT
TGAACAGACTCTGTAATAGAGTACAATGTGCAGACGCCGAGATTCCTCGG
CGTCAAATACTTTTTTGCTACTTACAACCGTGGCCTGGCACAGGACACGA
TCTTCGATCGTGTGGAGCTTGTACAACCACACGAATACAGGTGGCCGGCC
GTACCGTACCATGCAAACATACCAGTACGGAAGAGCATTCAACGCAAAGA
AAAAAAACATAAACTCTCAGACATCAGGACTGCCAGTATCAATATGTTTC
AATCATGCTTTCTAGGTCCCATAAATTACGTCGCATCGGTGCTGTCTTTT
TGAAGTTTTTCGATCACTTTTTTTCTGTCCCATAAGAGTCGGCCTAACAC
CAGAGAAAGACTACACGACATCCACCTGGAGGATACAAGTTCGCGCCATT
GTGGCTAATCAACTATGGCGAGCAAACCAGCACGAGCCCGCTCGGTTTGG
GCTATCCTTTCCTTTCCTTGCCCCTTCCTGTCACGTTCGGGCATGCTACT
GCACGTCGTGGTCCAGCCCTGGCTTTATCTGCAGCGATCCATTTCGCCAT
GTAACGCTATGCCCAAGGTTCCGCCGCCCTGCGCCATTCCCCCTCGTCCC
GGGCTGCAGTCGTCCACCGGTCGACCTTGTCAACCGATGATTGGTTGAAT
TTGACTTCACTTACTCACGCTTTCCGCTACGGAAGCCAGATTAAAAAAAC
TGGTCCTGCCTTGAATCGAATTCACGACTTTTGCACAATTGACATTAAAA
GTGAAACTGGGAGGTTATCCACTACCATACGAACGAGCAGTGTGGGGGTG
GGGGGGGGGGGGGGGGGGGGTATGCTGCCAGACTTTTTCTTTTGTTTTAT
TTTCCCTGTTCAACAGACCACGAGCGGGATTGGCCACCGTGTAAAGTAGT
TTTTTCGGGTTGGCCACCAATACGCTGAATGTGAGAAACACAAAAAAACA
ACAACACGTTTTGACACTTCTTTCCCCCCTAACCGGGAGATGCTCAAAAG
GTCTAGGTGCTGTTATGATTTTCTTTAAACAACAACAACAACTTACCGTA
AGTATCGATCAAATAATCTTGGCACACCCCCTAGACGGACTTTCCAGGCT
CGATTGCTCCACAACCAAGAGGGTTATAAGGGTTATACTGGTTATACTGG
TTATACTGGTTATACTGGTTATAGTATAGGTGACAATGCCGAAAAGGGCG
GTTTTCGAAAGATTGATGATCTCGTCGAGAGCTTTCTTTAGACGTATCGG
TCGGTGTTCCCATATCCTCTTGGTTGTGGAGCAATCGAGCCTGGAAAGTC
AGTCTAGGAGGTGTGCCAAGACTCCGATACTTGCGGTATTACTTATTAAC
TCTACTATAGCGACGATCTAAGGCATATTACGAATACTTTTTTTTATCCC
ATGTAGTTATTTTTGTGTTGTTTGTATACGGTAAAAGCGCCATTGCCTCC
GATACTATTATACCTGTATCCCACATGTATGTCCTCTGTCCTCTGTCCTC
TGTCCTCTGTACCCATAGTGGCTTTGGGAAAAGAGAGGCGCACAAAAGTT
TGTCCATCGGGTTTCCAAAGTAGGCAGCACCCGTTGTTACCCGAACTTAC
CTTGAAGACTACTGGCTATTATTGTGCGGGTGGACTCTTTGCGGAACGCC
ATCGGCACGCAATTCCGTGACCCGATAAACTCGGTACTGACTTGATGGTA
TGGATGGACGCCGTCGTCGCGGAAAGCGCGGGAGGAAGGAAAATAAATAA
TATGCGAGAAAGCACCAGATTCAGCCTGGGTGTGAGAATGAGCGGGCTAA
CGTGGGATGGGACGGCCGAACTGTCTTCACGCGAGAGGCCAAATTCTCAG
GCGCGAACGGGGACAGGGAAATATTCATTTTCCGTACAGTATTAATTTTG
GGTATGGCTATTTGCCCCACCGGTGGCCTATTCTCTTGTTTACCCCCCCA
CCTGGTTCTCGCGTGAGAAGACTTGGTTGGTCACAGTACATGCATGGGTA
TGTTAGGGTTAGTGTTAGCTATCGTGGGGTCTATCGTGCCGCCCAGACGG
TCCTATCTACGTGCTACCACGGCCGGTGGGGTGATTGGTGTTTTCTGGTA
TGTTTGGCTATTTGCCCTTACATACCAGAAAACATCAACCACCCCACCGG
CCGTAACAGCACGTAGACAGAACCGTTTGGGCTGCACGATAGACCCCATG
ATAGCCCTGCGACGCGCCAACACACTCATGTATGTACTGTGACCAACCGT
GTCTTCTGACGCGAGATCCAGGCGGTGGGGTAAAATTGGGAATGGCCCAC
CGGTGGGCCAAATAGCCATTTCCATTAATTTTCTCTGTTCAGCTGGCCAC
GCGGAGCAGGACTGACAACCATATACTATACTGTACTGTATTCATTTTGG
TTGAAACGTCAGAACTGGACTATGAAAATACGACATGCACAAATAATATT
AGTATGAATATTACCAGTAAATAGTACCAAGGCATGTCCCAACGTGTCAG
TAGTAACCAAAACCAAGAAGCGGATACTGATATAGCCCAATGCAAGCGTT
CTTGTGTTTTGGTTCGCTCGCTTGCATCATAATATTAGTTTATTTTAGCC
AAAAGTGGCGCGAACTTGCATCCTTCGCGGGCGCTTTTGATTACCGGTGC
CATATTTTTGCTTTTTCTCTGGCGTTACGTGTTTTATGTTGTTTGGTTTT
GGTGTTTTGGTGTTTAGGCGTTTTTGCTTCCTTGTTTTATTGATGTTGAT
GATGAAGCCGCGGCCTTTCTTGGTTCAATCCTTACCGGTACTCTTTTTTG
TTTGTTTTTTGTTTGTTTTTTGTTTGTTTTTTGTTTGTTTGGAAAGTATT
AATAGTACGTTGTACGTGATTTCCTCCTGGTTGGTGCTTTTCTGCCTTGT
TACCACGGGCTGGATTATCTTGACTTCAGCTTATTATGTTGAGATTTCAA
TCAATCAATCAATTAATCAATCAATAATGACCAGTCTCCTGTTAGTCTAT
ATACCTGGTACAACATATGATAACCACTATCGCAAATACATACATTACAG
TACTGTATTGAGTTACAATATTGAGTATTTACATAGTAAACGAGTCATCT
CCGGCAGGACCGGTCGACTCTGAAAAAAATAAACGTGCAATTTCGAAGAG
GTGTGAAATGAAGCTCATTACAGTATGTATGTACGTATATTTGGTCTCAC
ATATAGCAGAGTATGGATCAACCGGGTAAGGTTGCCAATCCTGCTCGTGG
TCAGCAGAACAGGGAAATAATATTCCCCTGTCCCCGTGCGTGCCTAAGAA
TTTGGTCTCGTGAGACGGGTTCAGCCGTCCCGTCCCGCGTCAGCCTGCTC
TACTCCATACTCAGGCTGAATCTGGTACTTACTTACGGGATTCCTCACGA
GTTCCGCTGGTACCTGTTAATAATGTAGCTCTATGACTCTGTTACTCGAT
AACTCCCTCCTTGAAATCGGGGAGGTGGGGGTCGGGGGGGACCATTCATG
GCATACATTCTTCTTACAATCATAGCGAATGAATACCACCAGCTCGGCGA
AGCGTAAGCGTCGGCTGCTTGTGGTTCAGCTAACTTTCCTATAAGAAAAA
ATAATCACTTACTACTATACTGTACTGTACTACCCTACTGTATACTGTTC
GAGAGACGTTACTACTGTAACATTAATACCCAGGACCGCACATCTCGTGT
GACCGCTTGCAATAACAACGAACAGGTCTCGCCGACTCATGGTTGATCCA
CCGCCCGCAGCAGGCGGTGCTTGCGCCTCTCAAAACAAGGGTCAGCCCGA
GGTTCAGACTGAGGAAGAGATGAGGACG
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig143:711139..718166-

>mRNA_F-serratus_M_contig143.3086.1 ID=mRNA_F-serratus_M_contig143.3086.1|Name=mRNA_F-serratus_M_contig143.3086.1|organism=Fucus serratus male|type=CDS|length=1008bp|location=Sequence derived from alignment at F-serratus_M_contig143:711139..718166- (Fucus serratus male)
TCCAACAGATACTATGCTCAACAGGAGGTGGAACGTGAGTTGGGGTTGGA
GCGAGGAGAAATTGGCAAGTTTTACCGGACCATGCATCATGGAGAAGGAG
GTGACAAGAAGAAGGCAACAACCTTGGCCCTTCTCAAAGAAGCCGGCGTC
TTTCGGATCAAGAGAACGAAGCCAAAAGGGCAGAGTACGCCGTACTGGAT
TGCCTTTGCTGGCAAAGGCCCAGCGAAGCGACACCCTCCGCCCTTCTTTA
TGTCGGACGCCGAGCATGTTTTTGAGTTCAAGGACTATACCTCCCACCCG
GCGGCGTCTGTCGAGTCGGATATGGACTTGGAGAAAGCGGCCAACGAGGC
GGACGACACGCCATCGGGACACACGCCGCCGAGCTGCACGGTCATGGCAC
GTCCAACAGATACTATGCTCAACAGGAGGTGGAACGTGAGTTGGGGTTGG
AGCGAGGAGAAATTGGCAAGTTTTACCGGACCATGCATCATGGAGAAGGA
GGTGACAAGAAGAAGGCAACAACCTTGGCCCTTCTCAAAGAAGCCGGCGT
CTTTCGGATCAAGAGAACGAAGCCAAAAGGGCAGAGTACGCCGTACTGGA
TTGCCTTTGCTGGCAAAGGCCCAGCGAAGCGACACCCTCCGCCCTTCTTT
ATGTCGGACGCCGAGCATGTTTTTGAGTTCAAGGACTATACCTCCCACCC
GGCGGCGTCTGTCGAGTCGGATATGGACTTGGAGAAAGCGGCCAACGAGG
CGGACGACACGCCATCGGGACACACGCCGCCGAGCTGCACGGTCATGGCA
CGGTCTCGCCGACTCATGGTTGATCCACCGCCCGCAGCAGGCGGTGCTTG
CGCCTCTCAAAACAAGGGTCAGCCCGAGGTTCAGACTGAGGAAGAGATGA
GGACGGTCTCGCCGACTCATGGTTGATCCACCGCCCGCAGCAGGCGGTGC
TTGCGCCTCTCAAAACAAGGGTCAGCCCGAGGTTCAGACTGAGGAAGAGA
TGAGGACG
back to top