mRNA_F-serratus_M_contig143.3072.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3072.1
Unique NamemRNA_F-serratus_M_contig143.3072.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig143.3072.1 vs. uniprot
Match: D8LTP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP1_ECTSI)

HSP 1 Score: 152 bits (384), Expect = 1.980e-42
Identity = 73/105 (69.52%), Postives = 87/105 (82.86%), Query Frame = 1 
Query:   16 RDARASLTAAYNALFASFTASTLQTAGRIALGLHIGGLLKTHVLDLFGPILDPVGYRLDLNTYFDEQNISYVGKANAMGGAPNMILNVVCYSVVFVLFCVHSNIA 330
            R AR+S    YNAL A FTAST+QTAG+  LGLHIG LLKTHVLDLFGPI+DP+GYRLDL+ YFDE++I Y+GKANAMGG  NM LN++CYSVVF +F VH ++A
Sbjct:  165 RQARSSFNGVYNALIACFTASTIQTAGQFTLGLHIGNLLKTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMGGPRNMALNILCYSVVFAVFRVHPSVA 269
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BLAST of mRNA_F-serratus_M_contig143.3072.1 vs. uniprot
Match: A0A6H5JP85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP85_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 9.810e-39
Identity = 73/110 (66.36%), Postives = 87/110 (79.09%), Query Frame = 1 
Query:   16 RDARASLTAAYNALFASFTASTLQTAGRIALGLHIGGLLK-----THVLDLFGPILDPVGYRLDLNTYFDEQNISYVGKANAMGGAPNMILNVVCYSVVFVLFCVHSNIA 330
            R AR+S    YNAL ASFTAST+QTAG+  LGLHIG LLK     THVLDLFGPI+DP+GYRLDL+ YFDE++I Y+GKANAM G  NM LN+ CYSVVF++F VH ++A
Sbjct:  367 RQARSSFNGVYNALIASFTASTIQTAGQFTLGLHIGNLLKASYLLTHVLDLFGPIIDPIGYRLDLSPYFDEEDIPYMGKANAMDGPRNMALNIFCYSVVFIVFQVHPSVA 476
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BLAST of mRNA_F-serratus_M_contig143.3072.1 vs. uniprot
Match: A0A6H5JS93_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JS93_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 3.100e-37
Identity = 64/108 (59.26%), Postives = 84/108 (77.78%), Query Frame = 1 
Query:    7 LDLRDARASLTAAYNALFASFTASTLQTAGRIALGLHIGGLLKTHVLDLFGPILDPVGYRLDLNTYFDEQNISYVGKANAMGGAPNMILNVVCYSVVFVLFCVHSNIA 330
            +D  +AR+SL   YN L  SFTAST QTAG+IALGLH+G LLKTH+LDLFGP++DP+GYRLDL TY+DE+ I Y+G ANAM G  N+ +N+ CY++VFV+   H  ++
Sbjct:   34 VDPDNARSSLRGLYNGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMVDPIGYRLDLTTYYDEEEIPYMGNANAMDGPHNLAMNIFCYALVFVVIRAHPPLS 141
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BLAST of mRNA_F-serratus_M_contig143.3072.1 vs. uniprot
Match: D8LTP3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTP3_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.440e-34
Identity = 63/108 (58.33%), Postives = 81/108 (75.00%), Query Frame = 1 
Query:    7 LDLRDARASLTAAYNALFASFTASTLQTAGRIALGLHIGGLLKTHVLDLFGPILDPVGYRLDLNTYFDEQNISYVGKANAMGGAPNMILNVVCYSVVFVLFCVHSNIA 330
            +D  +AR+SL   Y+ L  SFTAST QTAG+IALGLH+G LLKTH+LDLFGP+LDP+GYRLDL TY+DE  I Y+G  NAM G  N+ +N+ CY++VF +   H  +A
Sbjct:  169 VDPDNARSSLRGLYSGLITSFTASTYQTAGQIALGLHVGTLLKTHLLDLFGPMLDPIGYRLDLTTYYDEAEIPYMGNPNAMDGPHNLAMNIFCYALVFAVIRAHPPLA 276
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BLAST of mRNA_F-serratus_M_contig143.3072.1 vs. uniprot
Match: D7FJ41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ41_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.090e-10
Identity = 36/95 (37.89%), Postives = 54/95 (56.84%), Query Frame = 1 
Query:    4 ALDLRDARASLTAAYNALFASFTASTLQTAGRIALGLHIGGLLKTHVLDLFGPILDPVGYRLDLNTYFDEQNISYVGKANAMGGAPNMILNVVCY 288
            AL  +   AS+ + Y A+  S TAST + AG++ L L  GGL+K  + DL GP++DP+GY+++L TY           AN M G  N+ + +  Y
Sbjct:  242 ALSFKKLAASVNSLYAAVITSITASTFKRAGQLTLALTCGGLIKRALFDLLGPVIDPIGYQIELETYV----------ANIMRGPANLYITLAGY 326
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D8LTP1_ECTSI1.980e-4269.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP85_9PHAE9.810e-3966.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JS93_9PHAE3.100e-3759.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTP3_ECTSI2.440e-3458.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FJ41_ECTSI1.090e-1037.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:415136..418029 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size333
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3072.1prot_F-serratus_M_contig143.3072.1Fucus serratus malepolypeptideF-serratus_M_contig143 415136..418028 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929414.6395135-CDS-F-serratus_M_contig143:415135..4152701622929414.6395135-CDS-F-serratus_M_contig143:415135..415270Fucus serratus maleCDSF-serratus_M_contig143 415136..415270 +
1690962841.0068014-CDS-F-serratus_M_contig143:415135..4152701690962841.0068014-CDS-F-serratus_M_contig143:415135..415270Fucus serratus maleCDSF-serratus_M_contig143 415136..415270 +
1622929414.6555407-CDS-F-serratus_M_contig143:415974..4160641622929414.6555407-CDS-F-serratus_M_contig143:415974..416064Fucus serratus maleCDSF-serratus_M_contig143 415975..416064 +
1690962841.015778-CDS-F-serratus_M_contig143:415974..4160641690962841.015778-CDS-F-serratus_M_contig143:415974..416064Fucus serratus maleCDSF-serratus_M_contig143 415975..416064 +
1622929414.674867-CDS-F-serratus_M_contig143:417923..4180281622929414.674867-CDS-F-serratus_M_contig143:417923..418028Fucus serratus maleCDSF-serratus_M_contig143 417924..418028 +
1690962841.0242724-CDS-F-serratus_M_contig143:417923..4180281690962841.0242724-CDS-F-serratus_M_contig143:417923..418028Fucus serratus maleCDSF-serratus_M_contig143 417924..418028 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3072.1

>prot_F-serratus_M_contig143.3072.1 ID=prot_F-serratus_M_contig143.3072.1|Name=mRNA_F-serratus_M_contig143.3072.1|organism=Fucus serratus male|type=polypeptide|length=110bp
AALDLRDARASLTAAYNALFASFTASTLQTAGRIALGLHIGGLLKTHVLD
LFGPILDPVGYRLDLNTYFDEQNISYVGKANAMGGAPNMILNVVCYSVVF
VLFCVHSNIA
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mRNA from alignment at F-serratus_M_contig143:415136..418029+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3072.1 ID=mRNA_F-serratus_M_contig143.3072.1|Name=mRNA_F-serratus_M_contig143.3072.1|organism=Fucus serratus male|type=mRNA|length=2894bp|location=Sequence derived from alignment at F-serratus_M_contig143:415136..418029+ (Fucus serratus male)
GCTGCTCTCGACTTGAGGGATGCCCGCGCGAGCTTGACTGCCGCGTACAA
CGCCCTATTTGCGAGTTTCACGGCATCTACGCTGCAGACCGCAGGCCGCA
TCGCTCTGGGGCTGCACATCGGGGGCTTACTCAAGGTGGTACTCAATATA
GAGTGTAAAACTAGTGACTGGTAAGTCTTTGGGGGCGATGGGCACGGCTT
GTCTAGGTTTTTGAGGCGAAAAAGGCGTTTCTAAATGGGTAGGGGGGGGG
CGCGATAATATATCGCTACACTCGCGTTTCATGTTAGGAACGGTGCGTTC
TCCCCGTATGTTTTTGTCGTTTGCTCTGTTGGTGTGTACCCCTTTTTTGG
TGTGTACCGTTTTTGTGGAGTACCCTGCTATGTTGAGGGTACCACCGCCC
ACCGCTCCTAACCTTCGCCCTCGACGTGCATGTACTTGCTCGCGGATTCC
ATACACAGAGAAAGCGATTTCTCCTCATGAACAAAAACAAATGGGGGGGG
GGAAGGGGGGGAAGAGTTTTCATTTTATTTATGTACTGCGTATACAGAAA
GAAAGAAAAAAAGAAGATATAAATAGAAAAGGATACAAAAGAAACAAAAC
AGAAAAATTTAAGTAGAAACTCAACTCGTGACTACTCGTATAGACTACTG
ATTGATACGTAAGGAAGCCTTGCGAACTCCGCGGGAGAAGCTTGGCCTAC
TCACGCTCGAACATGAAAAGGATACCGAACGTTGCGCCCAGTTATGGGGG
AAATGGTGACCGGCTGAGGGGTGTGACCGATCTTCTCTCCCCCCCCCCAA
CATCCCGCCACCATACTTGCTGACGTTGTGGGCATTCAGACGCACGTGCT
TGACCTCTTCGGCCCAATCTTGGACCCCGTCGGCTACCGCTTGGACCTCA
ATACCTACTTTGACGAGCAAAACATATCGGTGAGTTCATGACCTTTTGAA
TTTTCTTGGGGGCGGGCGGGGGGCGGGTCTTGCCTTTTCTTCTTCAAGTC
CTTTTTTTATTTTTCTTGGGCATCATGTATACTATAGCCTATATACTATA
TGTTCATATACGTTTCCCAACTCGTCGCCCTATTGCAAAAAAGAGTGCTG
AACTTGCGTCTCGATAAGAAATTCGTGAGGCGTGGACCGGGGAGAGATGG
AAAGTATCGGTGTGTTCTCATTTTACTGGTCACGCCGAAAGGGGGAGATC
GCGGCAGTTCCCCTCCCTTCCCTTCCCCTCCCTTTCCCCTCCTCTCTGGT
GTCCGCGATGACAATGACGGACGCGTGTAGTACATGTATGGTCACACATA
TAGCAAGAGTATGCATCAACCGGGTAAAAGGTTGCCAGTCCTGCACGTGG
TCAGCTGAACAGGAAAAATGAATATTCCCCTGTCCGCGTTCGTGCCTGAG
AATTTGGTCTCGCGAGACGGGTTCGGCAGTCCCGTCCCGCGTCAGCCTGC
TCCATACTCAGGCTGAATCTGGTGCTTACTTACGGGATTCCTCCCGCGTT
CCGCGGCGGCGTCCACTTATGAAACCGCCATACGCCATCGAGTCAGTCCC
GAGTTTATCGGATCGCGCAATTGCGTACTGATGGCGTTCACTGCCGAGAG
TTCGCCGGCACAGGGCCAGTAAACCTCAAGGTAGTTCCGAACGAGTGCTG
CCTTAGTAGGTCACCATGGACCAATTCATATACGCCTCTCTTTCCCACAC
CCACTATCGGCATGAAGTGGACATGTTGAAAGTACCGGAGTACATAACTT
TTTGAATGTATGGCATTGGAGGCGTTTCATTGAGAACGCCTCTTTTTTTA
TTTTTGTAACCAAACCTTTTCCCCCCTCGCGCCCCACGCCCCCCTATGCC
GCTCTTACTGCGGACATAATTGGGGACGGGATGTGCCAAGTCCCCCCCCA
CCCTcccCCCCCCCCTCCCTCCTCCGGGTTTGGCAAAAAAATATCTGTCG
CGGCAGCTGTAGACCACCCCTCATCCCGCACGGTACGACTTTAGACGAGC
GGACATGACATGAAAAGATACAGCCGTGTTCAAAGAAAAATCTGAACGCA
TCGATACCTTCTGAGCATCCCACCCAGGGGGGGGGGGAATATCAAAGCGC
TTACGTGGGATCATAGGCTGCAAAGACACAACTTATTCATGGTATTTAAA
CGGGTTCCCCGATGGTAGTGACATTGGGTCAACAGTAAAATGTCGGGGAG
AAGCCCACCGTCATACTGTACACTTACATTAATCACTATGCAGGGACACC
AAAAAAAGCCTTGACCAAAACATTGTGGTGATGGAGTGTCAACATGTATG
TGTTTATGTATGTATGGTCACACATGTAGCAAGAGTTTGGACCAACCTCG
TAAGGTTGCCAATCCTGCTCGTGGTCAGCTGAACAGGAAAAATATGTCTT
CGTTCGAAGCGAGGGAAGCTTCCATGTCCGGAGTGTCTGCTTTATATTTC
CCGCGCTGACCTCACGCGCAACAAAAGATTACAACGCCCTCAACGCGCTG
ACCTCACGCGCTAACCCTAATGCTGCCTTATAGCTGCACGCCAGCGCATT
GAGCCTTCTTTCGGCGCGTTTTCACCAGGTAAGGTATATAACTGCTCTAC
CCTCGAACTGCTTCTGAAGTAAAAAGTAAAAGTAAAGTGATGTTCAAGTG
AACGCGAGACGCGTCCTTTATTTCCAAGCGCTTGTCGGGCAACGTGTAAA
ATCTGTGTTTTTCCCTCGTAATCTACTCGGCTAAGGCTGTGACCGTGCGT
GCGACACCACCGATCCTTGTTACCGCCTCACCGAGCAGTACGTGGGCAAG
GCCAACGCCATGGGGGGGGCGCCGAACATGATCCTCAACGTCGTGTGCTA
TAGCGTGGTCTTCGTCCTCTTCTGCGTACACTCGAATATCGCCC
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Coding sequence (CDS) from alignment at F-serratus_M_contig143:415136..418029+

>mRNA_F-serratus_M_contig143.3072.1 ID=mRNA_F-serratus_M_contig143.3072.1|Name=mRNA_F-serratus_M_contig143.3072.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig143:415136..418029+ (Fucus serratus male)
GCTGCTCTCGACTTGAGGGATGCCCGCGCGAGCTTGACTGCCGCGTACAA
CGCCCTATTTGCGAGTTTCACGGCATCTACGCTGCAGACCGCAGGCCGCA
TCGCTCTGGGGCTGCACATCGGGGGCTTACTCAAGGCTGCTCTCGACTTG
AGGGATGCCCGCGCGAGCTTGACTGCCGCGTACAACGCCCTATTTGCGAG
TTTCACGGCATCTACGCTGCAGACCGCAGGCCGCATCGCTCTGGGGCTGC
ACATCGGGGGCTTACTCAAGACGCACGTGCTTGACCTCTTCGGCCCAATC
TTGGACCCCGTCGGCTACCGCTTGGACCTCAATACCTACTTTGACGAGCA
AAACATATCGACGCACGTGCTTGACCTCTTCGGCCCAATCTTGGACCCCG
TCGGCTACCGCTTGGACCTCAATACCTACTTTGACGAGCAAAACATATCG
TACGTGGGCAAGGCCAACGCCATGGGGGGGGCGCCGAACATGATCCTCAA
CGTCGTGTGCTATAGCGTGGTCTTCGTCCTCTTCTGCGTACACTCGAATA
TCGCCTACGTGGGCAAGGCCAACGCCATGGGGGGGGCGCCGAACATGATC
CTCAACGTCGTGTGCTATAGCGTGGTCTTCGTCCTCTTCTGCGTACACTC
GAATATCGCC
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