mRNA_F-serratus_M_contig143.3066.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig143.3066.1
Unique NamemRNA_F-serratus_M_contig143.3066.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig143.3066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig143contigF-serratus_M_contig143:290829..291476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size650
Cds size387
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.304886-UTR-F-serratus_M_contig143:290828..2910891622929412.304886-UTR-F-serratus_M_contig143:290828..291089Fucus serratus maleUTRF-serratus_M_contig143 290829..291089 +
1690962839.9805994-UTR-F-serratus_M_contig143:290828..2910891690962839.9805994-UTR-F-serratus_M_contig143:290828..291089Fucus serratus maleUTRF-serratus_M_contig143 290829..291089 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929412.3173597-CDS-F-serratus_M_contig143:291089..2914761622929412.3173597-CDS-F-serratus_M_contig143:291089..291476Fucus serratus maleCDSF-serratus_M_contig143 291090..291476 +
1690962839.989279-CDS-F-serratus_M_contig143:291089..2914761690962839.989279-CDS-F-serratus_M_contig143:291089..291476Fucus serratus maleCDSF-serratus_M_contig143 291090..291476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig143.3066.1prot_F-serratus_M_contig143.3066.1Fucus serratus malepolypeptideF-serratus_M_contig143 291090..291476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig143.3066.1

>prot_F-serratus_M_contig143.3066.1 ID=prot_F-serratus_M_contig143.3066.1|Name=mRNA_F-serratus_M_contig143.3066.1|organism=Fucus serratus male|type=polypeptide|length=129bp
MSGEGCDDIGDQGSADGGSGDGDVASGAGNVVALIPQEVERTKKRPAMFR
PHGAWNTRNDVVLCGIGEHVFQVDVNKWFGDWEVDQLLAVPTAGRCLRYC
FLRQSVCRAAWLGRERAKESHMVLVYLYN
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mRNA from alignment at F-serratus_M_contig143:290829..291476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig143.3066.1 ID=mRNA_F-serratus_M_contig143.3066.1|Name=mRNA_F-serratus_M_contig143.3066.1|organism=Fucus serratus male|type=mRNA|length=648bp|location=Sequence derived from alignment at F-serratus_M_contig143:290829..291476+ (Fucus serratus male)
CTCCATTTCCATATTAGAGCTTGAACCTGAGTGATCGAACCTTCGTCACG
CAACATGATGCCTCAGAGTAATATGATGCCTCAGAGGCAAAGCTCGAGGC
CGGCGGCCCCATCTGCGAAGGATCGTGCGGCTAATCTCGCTCTTTCTTGC
AGCTCTGCAGAGGGAAGCAGACTCCCAGCCTGCTGTGTCACTCGTGGCAG
CGGGTGATGCCCACACGGGAAGGTGGGGCTGCTGCCAGGGTTCGAGCACT
ATCAGAAGTTCATGTCTGGTGAGGGATGCGACGATATAGGCGATCAAGGC
AGCGCCGATGGGGGAAGTGGTGACGGGGACGTGGCGAGTGGCGCCGGGAA
CGTGGTGGCTCTAATCCCGCAGGAAGTAGAGAGAACCAAGAAGAGACCAG
CAATGTTTCGACCCCATGGCGCGTGGAACACACGCAACGACGTCGTCCTC
TGCGGGATCGGCGAGCATGTGTTTCAAGTGGACGTGAACAAGTGGTTTGG
TGACTGGGAGGTTGATCAATTGCTTGCTGTACCTACAGCAGGACGTTGTT
TGCGCTACTGCTTCCTCCGCCAGTCAGTGTGTCGGGCTGCTTGGTTAGGG
AGAGAGCGCGCGAAGGAATCACATATGGTGCTGGTATACTTGTACAAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig143:290829..291476+

>mRNA_F-serratus_M_contig143.3066.1 ID=mRNA_F-serratus_M_contig143.3066.1|Name=mRNA_F-serratus_M_contig143.3066.1|organism=Fucus serratus male|type=CDS|length=774bp|location=Sequence derived from alignment at F-serratus_M_contig143:290829..291476+ (Fucus serratus male)
ATGTCTGGTGAGGGATGCGACGATATAGGCGATCAAGGCAGCGCCGATGG
GGGAAGTGGTGACGGGGACGTGGCGAGTGGCGCCGGGAACGTGGTGGCTC
TAATCCCGCAGGAAGTAGAGAGAACCAAGAAGAGACCAGCAATGTTTCGA
CCCCATGGCGCGTGGAACACACGCAACGACGTCGTCCTCTGCGGGATCGG
CGAGCATGTGTTTCAAGTGGACGTGAACAAGTGGTTTGGTGACTGGGAGG
TTGATCAATTGCTTGCTGTACCTACAGCAGGACGTTGTTTGCGCTACTGC
TTCCTCCGCCAGTCAGTGTGTCGGGCTGCTTGGTTAGGGAGAGAGCGCGC
GAAGGAATCACATATGGTGCTGGTATACTTGTACAATATGTCTGGTGAGG
GATGCGACGATATAGGCGATCAAGGCAGCGCCGATGGGGGAAGTGGTGAC
GGGGACGTGGCGAGTGGCGCCGGGAACGTGGTGGCTCTAATCCCGCAGGA
AGTAGAGAGAACCAAGAAGAGACCAGCAATGTTTCGACCCCATGGCGCGT
GGAACACACGCAACGACGTCGTCCTCTGCGGGATCGGCGAGCATGTGTTT
CAAGTGGACGTGAACAAGTGGTTTGGTGACTGGGAGGTTGATCAATTGCT
TGCTGTACCTACAGCAGGACGTTGTTTGCGCTACTGCTTCCTCCGCCAGT
CAGTGTGTCGGGCTGCTTGGTTAGGGAGAGAGCGCGCGAAGGAATCACAT
ATGGTGCTGGTATACTTGTACAAT
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