mRNA_F-serratus_M_contig142.3025.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig142.3025.1
Unique NamemRNA_F-serratus_M_contig142.3025.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig142.3025.1 vs. uniprot
Match: D8LPT2_ECTSI (Mannose-P-dolichol utilization defect 1 protein homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPT2_ECTSI)

HSP 1 Score: 192 bits (489), Expect = 2.350e-54
Identity = 93/140 (66.43%), Postives = 115/140 (82.14%), Query Frame = 2
Query:  452 SSTSAYGEIVTIFLQNAILVLLMWRFMKDRPSGLGIAMIIAGFVATAGACAMIPKDYMALLPLSNLPLIIVAKVPQIVANLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDLGLLSMHGLSSLLNGALALQIALYW 871
            S  SAYGEI+TI +QN ++VLL+W +MK+RPS LGI  ++A F+ T   CA +  +++ LLP SNLPLI+VAKVPQI+ N  NGHTGQLA++TT+LNFVGA++RILTTIQEVGWDLGLL MHGLSS LNG LALQ+ LYW
Sbjct:   86 SPFSAYGEIMTILVQNIVIVLLLWYYMKNRPSALGIVGLMAVFLGTTVGCATLKMEHLMLLPYSNLPLIVVAKVPQIMINHDNGHTGQLASVTTMLNFVGATIRILTTIQEVGWDLGLLWMHGLSSFLNGVLALQVVLYW 225          
BLAST of mRNA_F-serratus_M_contig142.3025.1 vs. uniprot
Match: A0A835YUU5_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUU5_9STRA)

HSP 1 Score: 160 bits (405), Expect = 4.420e-42
Identity = 80/158 (50.63%), Postives = 111/158 (70.25%), Query Frame = 2
Query:  452 SSTSAYGEIVTIFLQNAILVLLMWRFM--KDRPSGLGIAMIIAGFVATAGACAMIPKDYMALLPLSNLPLIIVAKVPQIVANLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDLGLLSMHGLSSLLNGALALQIALYWERTAQWSAVQAQKKTA 919
            S  SAYGE++TI +QN +LV+L+W +M  ++RP+  G A +I GF   A  CA +P +Y+ LLPL+NLPLI+VA++PQI+   +NGHTGQLA IT  +N  G ++R+LTTIQEVGWD GLL  +G S + NG L +QI  YW  T ++   + +KK A
Sbjct:   94 SPLSAYGEVLTILVQNLVLVVLLWAYMTPQERPALAGRAFVIMGFATIAVGCAALPPEYLHLLPLTNLPLILVARIPQILTIYQNGHTGQLAFITMAMNVAGTALRMLTTIQEVGWDKGLLIQYGTSLVFNGILFVQILYYWGATNKFVDSEDKKKVA 251          
BLAST of mRNA_F-serratus_M_contig142.3025.1 vs. uniprot
Match: A0A7S2V5B2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5B2_9STRA)

HSP 1 Score: 133 bits (334), Expect = 5.360e-32
Identity = 70/155 (45.16%), Postives = 99/155 (63.87%), Query Frame = 2
Query:  452 SSTSAYGEIVTIFLQNAILVLLMWRFMKDRPSGLGIAMIIAGFVATAGACAMIPKDYMALLPLSNLPLIIVAKVPQIVANLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDLGLLSMHGLSSLLNGALALQIALYWERTAQWSAVQAQKKT 916
            S  SA+GE+++IF+QN +LV L+WR+ K         +++A F A A AC   P     L+PL+N+P+I++A+VPQI+ N KNGHTGQLA IT  +N  G+  R+LTTI EVG D GL+  + + S LN  + LQ+  YW+ T  +   Q  KKT
Sbjct:   94 SPWSAFGEVISIFVQNLVLVGLLWRYAKPTIGLTSRLLVLAVFAAIAAACWYCPPSLQPLIPLANVPVIVMARVPQILLNFKNGHTGQLAFITVCMNAFGSLSRVLTTIIEVGGDWGLVLSYSVGSSLNTFIFLQMLYYWKNTENFQK-QMDKKT 247          
BLAST of mRNA_F-serratus_M_contig142.3025.1 vs. uniprot
Match: A0A5D6XZP8_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XZP8_9STRA)

HSP 1 Score: 120 bits (302), Expect = 2.770e-27
Identity = 65/151 (43.05%), Postives = 93/151 (61.59%), Query Frame = 2
Query:  461 SAYGEIVTIFLQNAILVLLMWRFMKDRPSGLGIAMIIAGFVATAGACAMIPKDYMALLPLSNLPLIIVAKVPQIVANLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDLGLLSMHGLSSLLNGALALQIALYWERTAQWSAVQAQKK 913
            S +GE + I  QN +LVLL+W ++  + +      ++  FVA      + P +Y  LL  + +P+ IVA++PQIV+N K GHTGQLA +T +LNF G+  RI TT+QE G  + LL   G+  LLNG L LQ+ L+W  T +  AV A+KK
Sbjct:  121 STWGENLIILAQNIVLVLLLWTYVTPKIAYSTRLALVVAFVAVTAGALLTPPEYQWLLASAGIPVSIVARIPQIVSNFKQGHTGQLAFVTLVLNFGGSVARIFTTLQETGDPVQLLGF-GVGILLNGTLVLQVLLFWGATNKALAVAAKKK 270          
BLAST of mRNA_F-serratus_M_contig142.3025.1 vs. uniprot
Match: D0NCC3_PHYIT (Mannose-P-dolichol utilization defect 1 protein homolog n=11 Tax=Phytophthora TaxID=4783 RepID=D0NCC3_PHYIT)

HSP 1 Score: 115 bits (288), Expect = 2.290e-25
Identity = 65/151 (43.05%), Postives = 91/151 (60.26%), Query Frame = 2
Query:  461 SAYGEIVTIFLQNAILVLLMWRFMKDRPSGLGIAMIIAGFVATAGACAMIPKDYMALLPLSNLPLIIVAKVPQIVANLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDLGLLSMHGLSSLLNGALALQIALYWERTAQWSAVQAQKK 913
            S +GE V I  QN ILVLL+W F   + +      ++  F A A     IP +Y  LL  + +P+ IVA++PQI++N K GHTGQLA IT +LNF G+  R+ TT+QE G D   ++  G++ LLNG L LQ+ L+W  T +  A   +KK
Sbjct:  120 STWGENVVILAQNIILVLLLWSFYTPKIAVSPRFGLVLAFAAIAAGMFSIPDEYQWLLASAGIPVSIVARIPQILSNFKQGHTGQLALITLVLNFAGSIARLFTTMQETG-DPVQVAGFGVAILLNGTLVLQVLLFWGATNKALAQATKKK 269          
BLAST of mRNA_F-serratus_M_contig142.3025.1 vs. uniprot
Match: A0A024TCH2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=9 Tax=Aphanomyces TaxID=100860 RepID=A0A024TCH2_9STRA)

HSP 1 Score: 114 bits (286), Expect = 2.560e-25
Identity = 64/151 (42.38%), Postives = 95/151 (62.91%), Query Frame = 2
Query:  461 SAYGEIVTIFLQNAILVLLMWRFMKDRPSGLGIAMIIAGFVATAGACAMIPKDYMALLPLSNLPLIIVAKVPQIVANLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDLGLLSMHGLSSLLNGALALQIALYWERT-AQWSAVQAQK 910
            S++GE   I +QNAILVLL+W +     S   + ++   FVA       +P ++  LLP +++PL ++A++PQI++N + GHTGQLA +T  LNF G++ R+ TT+QE G D  +L    +S LLNG L  QI LYW  T A  + V+A+K
Sbjct:   99 SSWGESAVILIQNAILVLLLWHYSGAAKSTQFLGVVT--FVALGAGMFYLPSEFNWLLPSASIPLSVMARIPQIMSNFQQGHTGQLAFLTLFLNFGGSAARLFTTLQETG-DQVVLFGFAISMLLNGTLLAQIGLYWSATEAAMAKVKAKK 246          
BLAST of mRNA_F-serratus_M_contig142.3025.1 vs. uniprot
Match: A0A662X041_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X041_9STRA)

HSP 1 Score: 114 bits (286), Expect = 4.300e-25
Identity = 64/153 (41.83%), Postives = 91/153 (59.48%), Query Frame = 2
Query:  461 SAYGEIVTIFLQNAILVLLMWRFMKDRPSGLGIAMIIAGFVATAGACAMIPKDYMALLPLSNLPLIIVAKVPQIVANLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDLGLLSMHGLSSLLNGALALQIALYWERTAQWSAVQAQKKTA 919
            S +GE + I  QN +LVLL+W F   +        ++ GF A       IP +Y  LL  + +P+ IVA++PQI++N K GHTGQLA IT +LN  G+  R+ TT+QE G D   ++  G++ LLNG L LQ+ L+W  T + +  QA KK A
Sbjct:  120 STWGENLVILAQNVVLVLLLWAFYVPKIPATSRLGLVLGFAALGAGMFAIPPEYQWLLASAGIPVSIVARIPQILSNFKQGHTGQLAIITLVLNLGGSIARLFTTMQETG-DPVQIAGFGVAILLNGTLVLQVLLFWGATNK-ALAQASKKKA 270          
BLAST of mRNA_F-serratus_M_contig142.3025.1 vs. uniprot
Match: A0A485KEC0_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KEC0_9STRA)

HSP 1 Score: 114 bits (284), Expect = 5.160e-25
Identity = 66/153 (43.14%), Postives = 94/153 (61.44%), Query Frame = 2
Query:  461 SAYGEIVTIFLQNAILVLLMWRFMKDRPSGLGIAMIIAGFVATAGACAMIPKDYMALLPLSNLPLIIVAKVPQIVANLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDLGLLSMHGLSSLLNGALALQIALYWERT--AQWSAVQAQKK 913
            S +GE +TI +QN ILV ++W + K   S   +   +A FVA       +P ++  +LP S++PL ++A++PQI +N K GHTGQLA IT  LNF G++ R+ TT+QE G  + LL    +S LLNG L  QI +YW+ T  A   A  A+KK
Sbjct:   99 STWGESLTILIQNIILVAMLWVYSKAPASTQLLG--VATFVALGAGMLHLPSEFDWVLPASSIPLSVMARIPQIFSNFKQGHTGQLAFITLFLNFGGSAARLFTTLQETGDQVVLLGFL-ISMLLNGTLIAQILIYWKATDAALAKAKDAEKK 248          
BLAST of mRNA_F-serratus_M_contig142.3025.1 vs. uniprot
Match: G4ZVB4_PHYSP (Mannose-P-dolichol utilization defect 1 protein homolog n=7 Tax=Phytophthora TaxID=4783 RepID=G4ZVB4_PHYSP)

HSP 1 Score: 113 bits (282), Expect = 1.520e-24
Identity = 64/152 (42.11%), Postives = 92/152 (60.53%), Query Frame = 2
Query:  461 SAYGEIVTIFLQNAILVLLMWRFMKDR-PSGLGIAMIIAGFVATAGACAMIPKDYMALLPLSNLPLIIVAKVPQIVANLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDLGLLSMHGLSSLLNGALALQIALYWERTAQWSAVQAQKK 913
            S +GE + I  QN ILVLL+W F   + P      +++  F A AG    IP +Y  LL  + +P+ IVA+ PQI++N K GHTGQLA IT +LN  G+  R+ TT+QE G D   ++  G++ +LNG L LQ+ L+W  T +  A  ++KK
Sbjct:  120 STWGENLVILAQNVILVLLLWAFYTPKIPVSTRFGLVVV-FAAMAGGMLSIPDEYQWLLASAGIPVSIVARTPQILSNFKQGHTGQLALITLVLNLAGSIARLFTTLQETG-DPVQVAGFGVTIVLNGTLVLQVLLFWGATNKALAEASKKK 269          
BLAST of mRNA_F-serratus_M_contig142.3025.1 vs. uniprot
Match: A0A3R7GUL4_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GUL4_9STRA)

HSP 1 Score: 113 bits (282), Expect = 1.620e-24
Identity = 67/154 (43.51%), Postives = 95/154 (61.69%), Query Frame = 2
Query:  461 SAYGEIVTIFLQNAILVLLMWRFMKDRPS---GLGIAMIIAGFVATAGACAMIPKDYMALLPLSNLPLIIVAKVPQIVANLKNGHTGQLAAITTLLNFVGASVRILTTIQEVGWDLGLLSMHGLSSLLNGALALQIALYWERTAQWSAVQAQKK 913
            S +GE + I  QN +LVLL+W F   + S    LG+A++   FVA A     IP +Y  LL  + +P+ IVA++PQI++N K GHTGQLA IT +LN  G+  R+ TT+QE G D   L+  G++ LLN  L LQ+ L+W  T +  A  ++KK
Sbjct:  123 STWGENLVILAQNVLLVLLLWAFYTPKISVSTRLGLAVV---FVAMAVGMFAIPPEYQWLLASAGIPVSIVARIPQILSNFKQGHTGQLAIITLVLNLAGSVARLFTTMQETG-DPVQLAGFGVAILLNSTLVLQVLLFWGATNEALAKASKKK 272          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig142.3025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LPT2_ECTSI2.350e-5466.43Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A835YUU5_9STRA4.420e-4250.63Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A7S2V5B2_9STRA5.360e-3245.16Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A5D6XZP8_9STRA2.770e-2743.05Mannose-P-dolichol utilization defect 1 protein ho... [more]
D0NCC3_PHYIT2.290e-2543.05Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A024TCH2_9STRA2.560e-2542.38Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A662X041_9STRA4.300e-2541.83Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A485KEC0_9STRA5.160e-2543.14Mannose-P-dolichol utilization defect 1 protein ho... [more]
G4ZVB4_PHYSP1.520e-2442.11Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A3R7GUL4_9STRA1.620e-2443.51Mannose-P-dolichol utilization defect 1 protein ho... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig142contigF-serratus_M_contig142:167212..169694 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1577
Cds size834
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig142.3025.1prot_F-serratus_M_contig142.3025.1Fucus serratus malepolypeptideF-serratus_M_contig142 167808..169547 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929405.6927688-UTR-F-serratus_M_contig142:167211..1678071622929405.6927688-UTR-F-serratus_M_contig142:167211..167807Fucus serratus maleUTRF-serratus_M_contig142 167212..167807 -
1690962836.7699544-UTR-F-serratus_M_contig142:167211..1678071690962836.7699544-UTR-F-serratus_M_contig142:167211..167807Fucus serratus maleUTRF-serratus_M_contig142 167212..167807 -
1622929405.7505171-UTR-F-serratus_M_contig142:169547..1696941622929405.7505171-UTR-F-serratus_M_contig142:169547..169694Fucus serratus maleUTRF-serratus_M_contig142 169548..169694 -
1690962836.80955-UTR-F-serratus_M_contig142:169547..1696941690962836.80955-UTR-F-serratus_M_contig142:169547..169694Fucus serratus maleUTRF-serratus_M_contig142 169548..169694 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929405.7068496-CDS-F-serratus_M_contig142:167807..1680041622929405.7068496-CDS-F-serratus_M_contig142:167807..168004Fucus serratus maleCDSF-serratus_M_contig142 167808..168004 -
1690962836.7836332-CDS-F-serratus_M_contig142:167807..1680041690962836.7836332-CDS-F-serratus_M_contig142:167807..168004Fucus serratus maleCDSF-serratus_M_contig142 167808..168004 -
1622929405.7184744-CDS-F-serratus_M_contig142:168488..1685931622929405.7184744-CDS-F-serratus_M_contig142:168488..168593Fucus serratus maleCDSF-serratus_M_contig142 168489..168593 -
1690962836.7934198-CDS-F-serratus_M_contig142:168488..1685931690962836.7934198-CDS-F-serratus_M_contig142:168488..168593Fucus serratus maleCDSF-serratus_M_contig142 168489..168593 -
1622929405.734124-CDS-F-serratus_M_contig142:169015..1695471622929405.734124-CDS-F-serratus_M_contig142:169015..169547Fucus serratus maleCDSF-serratus_M_contig142 169016..169547 -
1690962836.8014572-CDS-F-serratus_M_contig142:169015..1695471690962836.8014572-CDS-F-serratus_M_contig142:169015..169547Fucus serratus maleCDSF-serratus_M_contig142 169016..169547 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig142.3025.1

>prot_F-serratus_M_contig142.3025.1 ID=prot_F-serratus_M_contig142.3025.1|Name=mRNA_F-serratus_M_contig142.3025.1|organism=Fucus serratus male|type=polypeptide|length=278bp
MNSPSICFLFQNEPFHPKKPGRVTVLWCKCYILRKTETELLMRPHYHALP
QKCLWAERSLLETPAQRPIVLKHLYFETHESSRSKRPLCKTAPSLSPRVG
FVVHQRLRRDRDYFPPERDLGTANVAFHEGSTVRPRHRDDNRGFRCHGGS
VCHDSQGLHGAIAPEQLASDHRREGPTDSCQPQERAHRTAGSHHHLAKLR
GGERADTHHDTRGRVGLGPAFDARPVLPLERGVGSTNCTLLGAHRPMVRG
AGAEEDSITSGTGERRLLLTLLLRGVL*
back to top

mRNA from alignment at F-serratus_M_contig142:167212..169694-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig142.3025.1 ID=mRNA_F-serratus_M_contig142.3025.1|Name=mRNA_F-serratus_M_contig142.3025.1|organism=Fucus serratus male|type=mRNA|length=2483bp|location=Sequence derived from alignment at F-serratus_M_contig142:167212..169694- (Fucus serratus male)
TTTGGCTCCGTCATCCATATACAGCGACCTACTCATCTACATTGTCAACG CTGTCTACCACGTGGTCACCGGATCGCCGTTTAGGTGAGAGTTGGGTTCG GGCCTGCATCACCACCTGCTGGTGGTGCGTCCCTCCTCGACGGCCAAATG AACAGCCCTTCGATTTGTTTTCTTTTTCAGAATGAACCCTTCCACCCTAA GAAGCCGGGACGTGTGACAGTCTTGTGGTGTAAATGTTATATATTAAGAA AAACAGAGACCGAATTATTGATGAGGCCTCACTACCATGCGCTCCCTCAA AAGTGCCTTTGGGCTGAGCGATCCCTGCTTGAGACGCCGGCACAGCGGCC GATAGTTCTGAAGCATTTGTACTTCGAAACGCACGAATCATCACGTTCAA AACGGCCCCTCTGTAAAACGGCCCCTTCTCTTTCCCCTCGAGTGGGGTTT GTCGTCCACCAGCGCCTACGGCGAGATCGTGACTATTTTCCTCCAGAACG CGATCTTGGTACTGCTAATGTGGCGTTTCATGAAGGATCGACCGTCCGGC CTCGGCATCGCGATGATAATCGCGGGTTTCGTTGCCACGGCGGGAGCGTG TGCCATGATTCCCAAGGACTACATGGCGCTATTGCCCCTGAGCAACTTGC CTCTGATCATCGTCGCGAAGGTCCCACAGGCGAGAGAGCTAAGGGTGACC AATCCTGAAGGGTCGTCAGGCGACCACCTACTTCTCTGATTTTTATGCGC CGCCCACGCGCGCGGCTGCGGTTGCTCGCCGTAGATCTCACCTTGTTGGT CAGAATCTTTCGGCACTGCGAAGCGCGTTTGAAGGATCGATGACACGATC GACCCTGCGTCTCCCCGCGTGCCCATGGTCTTAATAGACGCGACGAGCAG TGAAACCCGACGAATATGATGTTCAACTCCCGCGTCTCGCCTCTCGTTCG AGCTACGCTAGTTTTGATTTGATTTGTTTTCATGTTTTTTGTATACCAAT AGAGTTCCCTGTTTCTTTGCGTGCGCAGGGTCCCTGACGGCGGTTCGCCT CTTGGTGCGTTTGCTTACCCCCCCCCCCCCCCCCCTTAACTAACCGTACA GATAGTTGCCAACCTCAAGAACGGGCACACCGGACAGCTGGCAGCCATCA CCACCTTGCTAAACTTCGTGGGGGCGAGCGTGCGGATACTCACCACGATA CAAGAGGTGTGTGTCATGTTTCATATGGCCCAAGTCTTCCCTCCCGTACT CGAGGCGAACGCTCGACGGCTCGGATGTCACAGATCGTTTGGATTCTGAC ACCTCGATCAAATACAGATATCGGTGATTGCCCCACAGCCACAGCGAGCG AAAACACTGCCGCGAAGGCCCAAGAGCCAGGCTACGCTAGCCTTAGAAGG TCCGCGCGGTGACAGCAGCCGCGGACCGCACGAGGCACAGACGTGGCTTG TTCCCCGCCGTATCGCGGGGAGCTTTTCTCTCTTCCCTCCTCACACGGAA CGTTCTCCGCGAAATTTTCAGTTCGTCCACACGATGGTTGCATGCACGTA AGTAACGCTTGTTTTATTTCCTCCTCTGTCGCGCGCACGTGGTGACCCAC GCCTCCCCGTTTCCCACCCGGTGGCGGCGGCCTCCTCCCCGGCGCGCCGC ATCTACCGGGTTCTCATTCGACGGCACTCTCGTCGGGAAGGTCGGGTGGG ACTTGGGCCTGCTTTCGATGCACGGCCTGTCCTCCCTCTTGAACGGGGCG TTGGCTCTACAAATTGCACTCTATTGGGAGCGCACCGCCCAATGGTCCGC GGTGCAGGCGCAGAAGAAGACAGCATAACCTCAGGCACGGGGGAGCGACG ACTACTGCTGACGCTGCTGCTACGGGGGGTACTGTAGCAAGAGAGTCCCG CGCGGCGATTCGCGGGGGACTCGTGTTCACCCGCACGTGTGTTTATATAC CAGTATATCTTCGAAGAACTTAATTGGTGGTGACATTGGTTTTAACGTCG GGAGGTTCTGTGCATATTTTTGTCTTTGTTAACAAAGTCAGTTAATGTGG CTTGAGTGTGTTTTTAGCACTTTTAAAAGGTGAAAAAACGCCCCATCTTG CAGGTTAGCTCTAATAAAGGTCTATAATTACTTTATCGTTCACGAAGAGG ATGGCCGTGGTCGAGATAGGCGCTGTGATTAGAGATCCCTCTAGCAACAC AAACGTGTCGCCCGGGCCCACGGGTCCTCGCAGCAGGTGCTCAAGTAGGC GGTGTCCACTTCCAGCCTTATGTTCTGACCACACGCTCTCTTTTTTTCAA GCTCTGCTTGCTCTTGTGGCGTTGGTCACGGTCGTATCTCTTATCAAATA CCTGGTAGTCGAGAGGCCGCAGCTTTGTTGCCAAGTTCCACTGCTGACAG CTTAACAACAGCACGGGAGAAATGCTCGACTTGTATCATAACTCTCATTA GTTTGTTTGTTTTAATTATTTGTTTACATCTTA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig142:167212..169694-

>mRNA_F-serratus_M_contig142.3025.1 ID=mRNA_F-serratus_M_contig142.3025.1|Name=mRNA_F-serratus_M_contig142.3025.1|organism=Fucus serratus male|type=CDS|length=1668bp|location=Sequence derived from alignment at F-serratus_M_contig142:167212..169694- (Fucus serratus male)
ATGAACAGCCCTTCGATTTGTTTTCTTTTTCAGAATGAACCCTTCCACCC
TAAGAAGCCGGGACGTGTGACAGTCTTGTGGTGTAAATGTTATATATTAA
GAAAAACAGAGACCGAATTATTGATGAGGCCTCACTACCATGCGCTCCCT
CAAAAGTGCCTTTGGGCTGAGCGATCCCTGCTTGAGACGCCGGCACAGCG
GCCGATAGTTCTGAAGCATTTGTACTTCGAAACGCACGAATCATCACGTT
CAAAACGGCCCCTCTGTAAAACGGCCCCTTCTCTTTCCCCTCGAGTGGGG
TTTGTCGTCCACCAGCGCCTACGGCGAGATCGTGACTATTTTCCTCCAGA
ACGCGATCTTGGTACTGCTAATGTGGCGTTTCATGAAGGATCGACCGTCC
GGCCTCGGCATCGCGATGATAATCGCGGGTTTCGTTGCCACGGCGGGAGC
GTGTGCCATGATTCCCAAGGACTACATGGCGCTATTGCCCCTGAGCAACT
TGCCTCTGATCATCGTCGCGAAGGTCCCACAGATGAACAGCCCTTCGATT
TGTTTTCTTTTTCAGAATGAACCCTTCCACCCTAAGAAGCCGGGACGTGT
GACAGTCTTGTGGTGTAAATGTTATATATTAAGAAAAACAGAGACCGAAT
TATTGATGAGGCCTCACTACCATGCGCTCCCTCAAAAGTGCCTTTGGGCT
GAGCGATCCCTGCTTGAGACGCCGGCACAGCGGCCGATAGTTCTGAAGCA
TTTGTACTTCGAAACGCACGAATCATCACGTTCAAAACGGCCCCTCTGTA
AAACGGCCCCTTCTCTTTCCCCTCGAGTGGGGTTTGTCGTCCACCAGCGC
CTACGGCGAGATCGTGACTATTTTCCTCCAGAACGCGATCTTGGTACTGC
TAATGTGGCGTTTCATGAAGGATCGACCGTCCGGCCTCGGCATCGCGATG
ATAATCGCGGGTTTCGTTGCCACGGCGGGAGCGTGTGCCATGATTCCCAA
GGACTACATGGCGCTATTGCCCCTGAGCAACTTGCCTCTGATCATCGTCG
CGAAGGTCCCACAGATAGTTGCCAACCTCAAGAACGGGCACACCGGACAG
CTGGCAGCCATCACCACCTTGCTAAACTTCGTGGGGGCGAGCGTGCGGAT
ACTCACCACGATACAAGAGATAGTTGCCAACCTCAAGAACGGGCACACCG
GACAGCTGGCAGCCATCACCACCTTGCTAAACTTCGTGGGGGCGAGCGTG
CGGATACTCACCACGATACAAGAGGTCGGGTGGGACTTGGGCCTGCTTTC
GATGCACGGCCTGTCCTCCCTCTTGAACGGGGCGTTGGCTCTACAAATTG
CACTCTATTGGGAGCGCACCGCCCAATGGTCCGCGGTGCAGGCGCAGAAG
AAGACAGCATAACCTCAGGCACGGGGGAGCGACGACTACTGCTGACGCTG
CTGCTACGGGGGGTACTGTAGGTCGGGTGGGACTTGGGCCTGCTTTCGAT
GCACGGCCTGTCCTCCCTCTTGAACGGGGCGTTGGCTCTACAAATTGCAC
TCTATTGGGAGCGCACCGCCCAATGGTCCGCGGTGCAGGCGCAGAAGAAG
ACAGCATAACCTCAGGCACGGGGGAGCGACGACTACTGCTGACGCTGCTG
CTACGGGGGGTACTGTAG
back to top