mRNA_F-serratus_M_contig1418.3018.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1418.3018.1
Unique NamemRNA_F-serratus_M_contig1418.3018.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1418.3018.1 vs. uniprot
Match: A0A6H5JLS1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLS1_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 8.510e-59
Identity = 130/387 (33.59%), Postives = 204/387 (52.71%), Query Frame = 1
Query:  202 PKDKLVIGTKMLYKRKIGQDGKVEKYKCRLAAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAASKDDGELRHFDAEQEFLKADIDEEIYIKVPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGSEQAKADPCVFRKVVDDKATV------------------DRFAAELEQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKILAASGMPTLSKADEPQ-----------HPE-----EKEEMKMFPYREAVGALMMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVDVFEDNEGAIRLATNKHASRRTKHIDVKHHLGRDASDAQRVRVAYVRSEDQHADLLTKPL 1260
            P+ +  +  K  +  K   +GK+ K+K RL A+GF ++  V Y    SP PS+ASI+++LA A  K    L H+D +Q +  A +DEEI++++P    +    +G+  +AIYGL Q+GR W     D +   G EQ KADPCVFRK+VD+   +                  +   A L++KF  K++G+ E++  C I R+ +   LK  Q  Y+++MVKRFDV+  ++I A+ G+    K D+ +           H E     E++E         +G    + + +  ++EAE +A  E VK+ LF+R V  F+ P     ++ V ED +GAI L  N  +  RTKHIDV+ H  R    +  + V +V + +QH DL+TK L
Sbjct:  201 PEGRRPVSPKWCFSWKTNNEGKIHKFKARLVARGFSKIPNVDYFHSSSPCPSSASIKLMLAVANEKGMN-LNHWDVKQAYTHATLDEEIFLRLPAGCGDKSHKIGKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDMLVAESDEDCEELLASLKKKFPTKNLGECEWFHRCAIERDVEAGTLKISQTTYIDNMVKRFDVQSTSRIPASPGVDLGPKRDDEKGGEWPVXALGCHTEDPRLPERDEGPRHHLPTGIGVRACRSIVSLSSTEAECIAAGEGVKEALFVRAVLSFVAPETSGSSIQVLEDKQGAIALVQNPLSPGRTKHIDVRFHFIRGLFRSGDISVKFVPTTEQHTDLVTKAL 586          
BLAST of mRNA_F-serratus_M_contig1418.3018.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 3.460e-58
Identity = 144/439 (32.80%), Postives = 229/439 (52.16%), Query Frame = 1
Query:   34 ACDDGGQMAMQATLDV-PEPRNRRQAMESHQWDEWRKAEDTEMLGMVENCVYNQVAR-PKDKLVIGTKMLYKRKIGQDGKVEKYKCRLAAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAASKDDGELRHFDAEQEFLKADIDEEIYIKVPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGSEQAKADPCVFRKVVDD------------------KATVDRFAAELEQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKILAASGMPTLSKADEPQHPEEKEEMKMFPYREAVGALMM-----QEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVDVFEDNEGAIRLATNKHASRRTKHIDVKHHLGRDASDAQRVRVAYVRSEDQHADLLTKPLDVKTF 1275
            A  D  ++  +   DV PEP + ++A+ +     W KA   E+ G++    +   A+ P+   VI  + ++K K  + GK+ K K RL A+GF Q  GV Y E +SPT +AASIR+++A A  K + EL H D EQ F+++ +D E+++K+P       G + RLNK+ YGL QA R +  +   D+  IG EQ+ +DPCV R ++ D                  K   +     L      +++G+   ++GC  +R+R+   ++  Q  Y+ S+ +  D    A   +   +PT+                      A G L+      Q+  +  TSEAEY+A+ + VK+ LF+  + +F+ PS +   +DVFEDNEGAI LA N  +S R+KHIDV+HH  R+ ++   + V +V S++QHAD+LTK L    F
Sbjct:  127 AARDAVELPKELIQDVKPEPGSYQEALRAKHATIWDKAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALAC-KYNLELLHLDIEQAFVQSKLDHEVFMKLPPGCDSMSGKIVRLNKSWYGLKQASRTFYKRLVSDLLRIGFEQSLSDPCVLRFMMGDEVMGIIAIHVDDILYAGTKRLAEVIVEALGDSLPTRNLGEVRLFLGCAFSRDREAGTIEISQEGYIRSVFR--DSIFVAPARSPLPLPTI----------------------AAGCLVSWFSWTQKCVSLSTSEAEYIAMGDGVKEALFVNGMLQFLRPSAKPRKIDVFEDNEGAIALAENPLSSSRSKHIDVRHHFLRNLTEEGVIEVTHVPSKEQHADILTKALPRNLF 540          
BLAST of mRNA_F-serratus_M_contig1418.3018.1 vs. uniprot
Match: A0A6H5KSG8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG8_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 3.570e-53
Identity = 142/486 (29.22%), Postives = 220/486 (45.27%), Query Frame = 1
Query:  133 WRKAEDTEMLGMVENCVYNQV-ARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLAAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAASKDDGELRHFDAEQEFLKADIDEEIYIKVPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGSEQAKADPCVFRKVVDDKATV------------------DRFAAELEQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKILAASGMPTLSKADEPQHPEEKEEMKMFPYREAVGALMM-------------------------------------------------------------------------------------------QEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVDVFEDNEGAIRLATNKHASRRTKHIDVKHHLGRDASDAQRVRVAYVRSEDQHADLLTKPL 1260
            W +A   E  G +    ++ V   P+ +  + +K  +  K  ++GK++ +K RL A+GF Q+  V Y    SP PS+ASI+++LA A  K    L H+D +Q +  A +DEE+++K+P    +    + +  +AIYGL Q+GR W     D +   G EQ KADPCVFRK+VD+   +                  +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SMV+RFDVK  ++I A  G     K ++       EE   +P REA+G++M                                                                                            Q + +  ++EAEY+A  E VK+ LF+R V  F+ P     ++ V EDN+GAI L  N  +S RTKHIDV++H  R    +  + V +V + +QHADLLTK L
Sbjct:  752 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMN-LNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1229          
BLAST of mRNA_F-serratus_M_contig1418.3018.1 vs. uniprot
Match: A0A6H5JZQ8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZQ8_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 3.930e-53
Identity = 142/486 (29.22%), Postives = 220/486 (45.27%), Query Frame = 1
Query:  133 WRKAEDTEMLGMVENCVYNQV-ARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLAAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAASKDDGELRHFDAEQEFLKADIDEEIYIKVPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGSEQAKADPCVFRKVVDDKATV------------------DRFAAELEQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKILAASGMPTLSKADEPQHPEEKEEMKMFPYREAVGALMM-------------------------------------------------------------------------------------------QEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVDVFEDNEGAIRLATNKHASRRTKHIDVKHHLGRDASDAQRVRVAYVRSEDQHADLLTKPL 1260
            W +A   E  G +    ++ V   P+ +  + +K  +  K  ++GK++ +K RL A+GF Q+  V Y    SP PS+ASI+++LA A  K    L H+D +Q +  A +DEE+++K+P    +    + +  +AIYGL Q+GR W     D +   G EQ KADPCVFRK+VD+   +                  +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SMV+RFDVK  ++I A  G     K ++       EE   +P REA+G++M                                                                                            Q + +  ++EAEY+A  E VK+ LF+R V  F+ P     ++ V EDN+GAI L  N  +S RTKHIDV++H  R    +  + V +V + +QHADLLTK L
Sbjct: 1131 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMN-LNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1608          
BLAST of mRNA_F-serratus_M_contig1418.3018.1 vs. uniprot
Match: A0A6H5KF60_9PHAE (Uncharacterized protein n=12 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF60_9PHAE)

HSP 1 Score: 201 bits (512), Expect = 4.030e-53
Identity = 142/486 (29.22%), Postives = 220/486 (45.27%), Query Frame = 1
Query:  133 WRKAEDTEMLGMVENCVYNQV-ARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLAAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAASKDDGELRHFDAEQEFLKADIDEEIYIKVPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGSEQAKADPCVFRKVVDDKATV------------------DRFAAELEQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKILAASGMPTLSKADEPQHPEEKEEMKMFPYREAVGALMM-------------------------------------------------------------------------------------------QEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVDVFEDNEGAIRLATNKHASRRTKHIDVKHHLGRDASDAQRVRVAYVRSEDQHADLLTKPL 1260
            W +A   E  G +    ++ V   P+ +  + +K  +  K  ++GK++ +K RL A+GF Q+  V Y    SP PS+ASI+++LA A  K    L H+D +Q +  A +DEE+++K+P    +    + +  +AIYGL Q+GR W     D +   G EQ KADPCVFRK+VD+   +                  +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SMV+RFDVK  ++I A  G     K ++       EE   +P REA+G++M                                                                                            Q + +  ++EAEY+A  E VK+ LF+R V  F+ P     ++ V EDN+GAI L  N  +S RTKHIDV++H  R    +  + V +V + +QHADLLTK L
Sbjct: 1294 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMN-LNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1771          
BLAST of mRNA_F-serratus_M_contig1418.3018.1 vs. uniprot
Match: A0A6H5JN00_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN00_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 7.320e-53
Identity = 142/486 (29.22%), Postives = 219/486 (45.06%), Query Frame = 1
Query:  133 WRKAEDTEMLGMVENCVYNQV-ARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLAAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAASKDDGELRHFDAEQEFLKADIDEEIYIKVPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGSEQAKADPCVFRKVVDDKATV------------------DRFAAELEQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKILAASGMPTLSKADEPQHPEEKEEMKMFPYREAVGALMM-------------------------------------------------------------------------------------------QEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVDVFEDNEGAIRLATNKHASRRTKHIDVKHHLGRDASDAQRVRVAYVRSEDQHADLLTKPL 1260
            W +A   E  G +    ++ V   P+ +  + +K  +  K  ++GK++ +K RL A+GF Q+  V Y    SP PS+ASI+++LA A  K    L H+D +Q +  A +DEE+++K+P    +    + +  +AIYGL Q+GR W     D +   G EQ KADPCVFRK+VD    +                  +   A L +KF  K++G+ +++ GC I R+ +   L+  Q  Y++SMV+RFDVK  ++I A  G     K ++       EE   +P REA+G++M                                                                                            Q + +  ++EAEY+A  E VK+ LF+R V  F+ P     ++ V EDN+GAI L  N  +S RTKHIDV++H  R    +  + V +V + +QHADLLTK L
Sbjct: 1151 WEQAMREEFEGHLGTGTFSFVDGAPEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFSQIPNVDYFHSSSPCPSSASIKLMLAVANEKGMN-LNHWDVKQAYTHATLDEEVFLKLPAGCGDKSHKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDQVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTKNLGECQWFDGCAIERDVEAGTLRISQTAYIDSMVERFDVKSTSRIPATPGADLGPKRED-------EEGGEWPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLGITYQRGSGLGLAVYVDASYADTEDRRSVSGLATTVGGTVVSHGSKTQSIVSLSSTEAEYIAAGEGVKEALFVRAVLSFVAPETSGSSIKVLEDNQGAIALVQNPLSSGRTKHIDVRYHFIRGLFRSGDISVKFVPTTEQHADLLTKAL 1628          
BLAST of mRNA_F-serratus_M_contig1418.3018.1 vs. uniprot
Match: A0A6A3Q908_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Phytophthora TaxID=4783 RepID=A0A6A3Q908_9STRA)

HSP 1 Score: 191 bits (486), Expect = 2.250e-51
Identity = 155/536 (28.92%), Postives = 244/536 (45.52%), Query Frame = 1
Query:   25 DVLACDDGGQMAMQATLDVPEPRNRRQAMESHQWDEWRKAEDTEMLGMVENCVYNQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLAAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAASKDDGELRHFDAEQEFLKADIDEEIYIKVPEEFQEF---------PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGSEQAKADPCVFRK-----------VVDD-------KATVDRFAAELEQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKILAASGMP--TLSKADEPQHPEEKEEMKMFPYREAVGALM--------------------------------------------------------------------------------------------MQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVDVFEDNEGAIRLATNKHASRRTKHIDVKHHLGRDASDAQRVRVAYVRSEDQHADLLTKPLDVK 1269
            D L   +GGQ+ M AT +VP  +   +A   H  DEW+KA  +E+  ++ N  +  V +P  +  IG + ++  K  + G+V +YK RL A+G+ Q  G+ Y E YSP     S+R +LA   ++   E+   D +  FL  +++EEIY+++PE  +E             V  L +++YGL QA R WN      + + G E A ADPCV+ +            VDD       KA +    A + +KF++KD+G A + +G  I  + + R L   Q  Y ES++K+F  ++ AK       P   L+KADEPQ  E+K +MK  PYR  VG+LM                                                                                             Q+  A  ++EAEY+ALS+ VK+ +++R++ + +    +VGA  ++EDN+GA+ LA N     RTKHID+++H  R+   +  V + YV +++Q A  +TK L  K
Sbjct:   48 DELLAIEGGQL-MAATEEVP--KTYAEATTRHDQDEWKKAIASELKSLIVNKTWKLVPKPAHQRPIGCRWVFALKRNEKGQVVRYKARLVAKGYSQRHGIDYEEAYSPVAYLNSVRAMLAKCGAEG-MEIEQCDVDTAFLYGELEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSTGFEPADADPCVYTRGEGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFIVGIEIDYDMERRTLGISQKAYTESIIKKFG-QENAKPCLTPLEPGVQLTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQPEAYSDADWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKEIGAE-QVGATVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLAYFMTKGLSSK 577          
BLAST of mRNA_F-serratus_M_contig1418.3018.1 vs. uniprot
Match: A0A438FEW0_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Vitis vinifera TaxID=29760 RepID=A0A438FEW0_VITVI)

HSP 1 Score: 194 bits (492), Expect = 1.590e-50
Identity = 154/513 (30.02%), Postives = 235/513 (45.81%), Query Frame = 1
Query:   85 EPRNRRQAMESHQWDEWRKAEDTEMLGMVENCVYNQVARPKDKLVIGTKMLYKRKIGQDG-KVEKYKCRLAAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAASKDDGELRHFDAEQEFLKADIDEEIYIKVPEEFQEF--PGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGSEQAKADPCVFRKVVDD------------------KATVDRFAAELEQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKILAASGMP-TLSKADEPQHPEEKEEMKMFPYREAVGALM----------------------------------------------------------------------------------------------MQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVDVFEDNEGAIRLATNKHASRRTKHIDVKHHLGRDASDAQRVRVAYVRSEDQHADLLTKPLDVKTF 1275
            EP+  ++A+ S++ D+W KA   EM  + +N  +  V +PKD+ V+G+K ++KRK G  G +  +YK RL A+GF Q EGV Y E +SP    +SIR+LLA  A +D  EL   D +  FL  ++DE IY++ PE F E    G V  L K++YGL Q+ R W  +F   M  IG   +  D CV+ K+ +D                  K  +++    L+ +F++KD+G A+  +G  I R+R  R L+  Q+ Y+  ++ RF++     +    G    LS    P+  EEK  M+  PY   VG++M                                                                                              +Q V A  T+EAEY+A++E VK+ ++L+ + E  E +M  G V V+ DN+ AI LA N+    R+KHIDV+ H  RD   A  + V  V ++D  +D+LTK L+V  F
Sbjct:  734 EPKTYQEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGSKWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNEIFSPVVKHSSIRLLLAFVAHED-LELDQLDVKTAFLHGELDELIYMQPPEGFGEGIKDGQVCLLKKSLYGLKQSPRQWYKRFDKYMLDIGFNPSSHDGCVYFKLTEDSMVYLLLYVDDMLVACKEKRHLEQVKEMLKAEFEMKDLGSAKRILGMEIERDRSKRVLRLSQNSYISKVLSRFEMNNVKTVSTPLGQHFRLSITQAPETHEEKRFMERIPYASMVGSVMYTMVCSRPDLAYAVSMISRYMSCPGKPHWQAVKWLFQYLAGTRSLGLVYGGNSQLETQLQGFVDADYAGNIDTRKSLTGYVFTVFGGAVSWKANLQSVVALSTTEAEYMAMTEAVKEAIWLKGITE--ELAMYRGKVVVYCDNQSAIHLAKNQSFHERSKHIDVRLHFVRDIIAAGEIGVGKVHTKDNPSDMLTKSLNVTKF 1243          
BLAST of mRNA_F-serratus_M_contig1418.3018.1 vs. uniprot
Match: A0A6H5K0K7_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K7_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 1.790e-50
Identity = 131/394 (33.25%), Postives = 192/394 (48.73%), Query Frame = 1
Query:  262 GKVEKYKCRLAAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAASKDDGELRHFDAEQEFLKADIDEEIYIKVPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGSEQAKADPCVFRKV------------VDD------KATVDRFAAELEQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKILAASGMPTLS-KADEPQHPEEKEEMKMFPYREAVGALMM-------------------------------------QEVTAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVDVFEDNEGAIRLATNKHASRRTKHIDVKHHLGRDASDAQRVRVAYVRSEDQHADLLTKPLDVKTF 1275
            G   + K RL A+GF Q EGV + E +SP PS  SIR+L A A   D  +L HFDAEQ F+++++DE ++I++P       G V RL +++YGL QA R W++     M ++G E   AD CV R +            VDD      K+  D+F  EL +   + ++G+  +Y GCH  R+     +   Q    E +V +F V  + +     G+      ADEP   E        P+R  VG LM                                      Q+     ++EAEYVA+S+ +K+ +FLR + +F+ P   VG   V+EDN GAI LA+N   +  +KHID++HH  R+       +V +VRS+ Q  D LTKPL  +TF
Sbjct:  361 GYAVRAKARLVARGFAQREGVDFFETFSPCPSITSIRLLAAIACVLD-WDLCHFDAEQAFVQSELDEVVFIRLPPGCGALSGKVVRLRRSLYGLKQASRTWHHHLMRGMKSLGFEPCAADACVMRLIESGVVTMVVVIHVDDIFSIGLKSRCDQFGVELNRYMPISNLGELRWYAGCHFPRDTVLGTVTISQQAVAEKIVAKFGVTTDKETPMVVGLKLEQYDADEPDVDE--------PFRSLVGYLMWLANQIRPDILNAATDRRSVSWALVMFAGACVMYLCRTQKSVTLSSTEAEYVAMSDGMKEAIFLRYLWKFIFPGRDVGCTPVWEDNVGAIHLASNPATTPNSKHIDIRHHFIRERVARGEFKVVHVRSDLQRPDFLTKPLPKETF 745          
BLAST of mRNA_F-serratus_M_contig1418.3018.1 vs. uniprot
Match: A0A6H5JBN2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBN2_9PHAE)

HSP 1 Score: 184 bits (467), Expect = 1.930e-47
Identity = 124/395 (31.39%), Postives = 190/395 (48.10%), Query Frame = 1
Query:  202 PKDKLVIGTKMLYKRKIGQDGKVEKYKCRLAAQGFWQVEGVHYTEKYSPTPSAASIRMLLATAASKDDGELRHFDAEQEFLKADIDEEIYIKVPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIGSEQAKADPCVFRKVVDDKATV------------------DRFAAELEQKFKLKDMGDAEYYMGCHITRNRKTRELKFDQHLYVESMVKRFDVKKEAKILAASGMPTLSKADEPQHPEEKEEMKMFPYREAVGALM-------------------------------MQEV----------------------TAAGTSEAEYVALSEVVKDVLFLRQVQEFMEPSMRVGAVDVFEDNEGAIRLATNKHASRRTKHIDVKHHL 1173
            P+ +  + +K  +  K  ++GK++ +K RL A+GF Q+  V Y    S  PS+AS +++LA A  K      H D +Q +  A +DEE+++K P    E    + +  +AIYGL Q+GR W     D +   G EQ KADPCVFRK+VD+   +                  +   A L +KF  +++G+ E++ GC I R+ +   LK  Q  Y++SMVKRFDV+  ++I A+ G+    K D     E       +P REA+G++M                               +Q++                        A ++EAEY+A  E VK+ LF+R V  F+ P     ++ V ED++GAI L  N  +S RTKHIDV+ H 
Sbjct:  506 PEGRRPVSSKWCFSWKTNKEGKIDTFKARLVARGFPQIPNVDYFHSSSACPSSASNKLMLAVANEKGVN-FNHSDVKQAYTHATLDEEVFLKRPAGCGEKLRKIAKAERAIYGLKQSGRQWGYHAADTLVENGFEQCKADPCVFRKMVDEVVVMIIVIYVDDILVAGSDEDCEELLASLNKKFPTRNVGECEWFDGCAIERDVEAGNLKISQTAYIDSMVKRFDVQSTSRIPASPGVDLGPKRDNENGGE-------WPVREAIGSMMWVSTFSRPDVSFAVRAVARHAHAPAKRHWDAIQKILGYLKGTRDLSITYQRGSGLGLAVASSTEAEYIAAGEGVKEALFVRAVLLFVAPETSGSSIQVLEDSQGAIALVQNPLSSGRTKHIDVRFHF 892          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1418.3018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLS1_9PHAE8.510e-5933.59Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE3.460e-5832.80Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSG8_9PHAE3.570e-5329.22Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JZQ8_9PHAE3.930e-5329.22Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KF60_9PHAE4.030e-5329.22Uncharacterized protein n=12 Tax=Ectocarpus sp. CC... [more]
A0A6H5JN00_9PHAE7.320e-5329.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6A3Q908_9STRA2.250e-5128.92Retrovirus-related Pol polyprotein from transposon... [more]
A0A438FEW0_VITVI1.590e-5030.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A6H5K0K7_9PHAE1.790e-5033.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JBN2_9PHAE1.930e-4731.39Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1418contigF-serratus_M_contig1418:137614..139224 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score185.3
Seed ortholog evalue6.1e-44
Seed eggNOG ortholog67593.Physo138912
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons3
Model size1275
Cds size1275
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1418.3018.1prot_F-serratus_M_contig1418.3018.1Fucus serratus malepolypeptideF-serratus_M_contig1418 137614..139224 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929405.5773716-CDS-F-serratus_M_contig1418:137613..1379381622929405.5773716-CDS-F-serratus_M_contig1418:137613..137938Fucus serratus maleCDSF-serratus_M_contig1418 137614..137938 -
1690962836.7176192-CDS-F-serratus_M_contig1418:137613..1379381690962836.7176192-CDS-F-serratus_M_contig1418:137613..137938Fucus serratus maleCDSF-serratus_M_contig1418 137614..137938 -
1622929405.5890481-CDS-F-serratus_M_contig1418:138217..1385181622929405.5890481-CDS-F-serratus_M_contig1418:138217..138518Fucus serratus maleCDSF-serratus_M_contig1418 138218..138518 -
1690962836.7293253-CDS-F-serratus_M_contig1418:138217..1385181690962836.7293253-CDS-F-serratus_M_contig1418:138217..138518Fucus serratus maleCDSF-serratus_M_contig1418 138218..138518 -
1622929405.5994637-CDS-F-serratus_M_contig1418:138575..1392241622929405.5994637-CDS-F-serratus_M_contig1418:138575..139224Fucus serratus maleCDSF-serratus_M_contig1418 138576..139224 -
1690962836.7374856-CDS-F-serratus_M_contig1418:138575..1392241690962836.7374856-CDS-F-serratus_M_contig1418:138575..139224Fucus serratus maleCDSF-serratus_M_contig1418 138576..139224 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1418.3018.1

>prot_F-serratus_M_contig1418.3018.1 ID=prot_F-serratus_M_contig1418.3018.1|Name=mRNA_F-serratus_M_contig1418.3018.1|organism=Fucus serratus male|type=polypeptide|length=425bp
AEEENGVEDVLACDDGGQMAMQATLDVPEPRNRRQAMESHQWDEWRKAED
TEMLGMVENCVYNQVARPKDKLVIGTKMLYKRKIGQDGKVEKYKCRLAAQ
GFWQVEGVHYTEKYSPTPSAASIRMLLATAASKDDGELRHFDAEQEFLKA
DIDEEIYIKVPEEFQEFPGAVGRLNKAIYGLVQAGRCWNNKFCDDMTAIG
SEQAKADPCVFRKVVDDKATVDRFAAELEQKFKLKDMGDAEYYMGCHITR
NRKTRELKFDQHLYVESMVKRFDVKKEAKILAASGMPTLSKADEPQHPEE
KEEMKMFPYREAVGALMMQEVTAAGTSEAEYVALSEVVKDVLFLRQVQEF
MEPSMRVGAVDVFEDNEGAIRLATNKHASRRTKHIDVKHHLGRDASDAQR
VRVAYVRSEDQHADLLTKPLDVKTF
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mRNA from alignment at F-serratus_M_contig1418:137614..139224-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1418.3018.1 ID=mRNA_F-serratus_M_contig1418.3018.1|Name=mRNA_F-serratus_M_contig1418.3018.1|organism=Fucus serratus male|type=mRNA|length=1611bp|location=Sequence derived from alignment at F-serratus_M_contig1418:137614..139224- (Fucus serratus male)
GCCGAAGAAGAAAACGGCGTGGAGGATGTGTTGGCATGCGACGACGGGGG CCAGATGGCTATGCAAGCGACGCTAGATGTACCAGAACCGAGGAATCGGC GACAGGCGATGGAATCGCATCAATGGGACGAATGGCGGAAGGCAGAAGAT ACTGAGATGCTTGGAATGGTCGAAAACTGCGTTTATAATCAGGTGGCTCG GCCGAAGGATAAGCTCGTGATCGGCACGAAAATGTTGTACAAGCGAAAAA TCGGGCAGGACGGCAAGGTCGAGAAGTACAAGTGTCGCCTTGCCGCTCAA GGGTTCTGGCAGGTGGAAGGTGTGCACTACACGGAAAAGTACTCGCCCAC GCCATCAGCCGCGTCAATCCGGATGCTTTTGGCGACGGCAGCATCCAAGG ATGATGGGGAGCTGCGCCATTTCGACGCAGAGCAGGAGTTTTTGAAGGCG GATATTGACGAGGAGATATACATAAAGGTCCCCGAGGAGTTCCAGGAGTT TCCGGGGGCAGTGGGACGGCTTAATAAGGCCATTTACGGACTCGTGCAGG CGGGGAGGTGCTGGAATAATAAGTTCTGTGACGACATGACGGCGATTGGA TCCGAGCAGGCAAAGGCGGACCCGTGCGTGTTCCGCAAGGTCGTTGACGG TGAGGCGGAGATGGTGGTGGTCGTGCACGTAGACGACATCCTTGCCCACG CAAAAGACAAAGCGACGGTGGATAGATTCGCGGCCGAGCTCGAGCAGAAG TTTAAGTTGAAGGACATGGGGGACGCTGAATACTACATGGGTTGTCACAT CACCAGGAACCGCAAGACGCGTGAGTTGAAGTTCGACCAACACCTGTACG TGGAGTCAATGGTAAAGAGATTCGATGTCAAGAAGGAAGCCAAGATACTG GCTGCGTCGGGGATGCCGACGCTCTCAAAGGCGGATGAGCCGCAACACCC AGAGGAGAAGGAAGAGATGAAGATGTTCCCGTACCGAGAGGCAGTGGGGG CGCTCATGTGGACGGCGACGACGACACGGCCGAATATCGCGTGCACCGTA CGCGCTGTGGCCAGGTTCTGCAAAAACCCTGGGCCGGCACACAAGAAGGC AGTGATGAAGATCTTCTAGTATCTCCTTCACACGAAAGAATGGGGGATTA CGTACGGTAGACAGAGCTGTGGACTCTGCATGGAAGCATATACGGATTCG GATTTCGGAGCCTGCCTGGACACAAGACGGTCGGTTTCAGGTGCGGTGTT GATGTTGGCCAAGGGAGCGATCAGTTGGCACTCGAGGATGCAAGAAGTAA CAGCAGCAGGTACCTCGGAGGCAGAGTACGTTGCCTTATCGGAGGTAGTG AAGGATGTACTATTTTTGAGACAGGTGCAGGAGTTCATGGAACCATCGAT GAGGGTCGGTGCGGTAGATGTATTTGAAGATAATGAGGGGGCCATCAGGC TGGCCACAAACAAGCATGCTAGCCGTAGGACTAAGCATATTGATGTAAAG CATCATCTAGGGAGGGACGCGTCTGACGCGCAAAGGGTTAGAGTAGCGTA CGTAAGGTCAGAAGATCAACACGCGGATTTGCTCACGAAACCGCTAGACG TGAAAACGTTC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1418:137614..139224-

>mRNA_F-serratus_M_contig1418.3018.1 ID=mRNA_F-serratus_M_contig1418.3018.1|Name=mRNA_F-serratus_M_contig1418.3018.1|organism=Fucus serratus male|type=CDS|length=2550bp|location=Sequence derived from alignment at F-serratus_M_contig1418:137614..139224- (Fucus serratus male)
GCCGAAGAAGAAAACGGCGTGGAGGATGTGTTGGCATGCGACGACGGGGG
CCAGATGGCTATGCAAGCGACGCTAGATGTACCAGAACCGAGGAATCGGC
GACAGGCGATGGAATCGCATCAATGGGACGAATGGCGGAAGGCAGAAGAT
ACTGAGATGCTTGGAATGGTCGAAAACTGCGTTTATAATCAGGTGGCTCG
GCCGAAGGATAAGCTCGTGATCGGCACGAAAATGTTGTACAAGCGAAAAA
TCGGGCAGGACGGCAAGGTCGAGAAGTACAAGTGTCGCCTTGCCGCTCAA
GGGTTCTGGCAGGTGGAAGGTGTGCACTACACGGAAAAGTACTCGCCCAC
GCCATCAGCCGCGTCAATCCGGATGCTTTTGGCGACGGCAGCATCCAAGG
ATGATGGGGAGCTGCGCCATTTCGACGCAGAGCAGGAGTTTTTGAAGGCG
GATATTGACGAGGAGATATACATAAAGGTCCCCGAGGAGTTCCAGGAGTT
TCCGGGGGCAGTGGGACGGCTTAATAAGGCCATTTACGGACTCGTGCAGG
CGGGGAGGTGCTGGAATAATAAGTTCTGTGACGACATGACGGCGATTGGA
TCCGAGCAGGCAAAGGCGGACCCGTGCGTGTTCCGCAAGGTCGTTGACGG
CCGAAGAAGAAAACGGCGTGGAGGATGTGTTGGCATGCGACGACGGGGGC
CAGATGGCTATGCAAGCGACGCTAGATGTACCAGAACCGAGGAATCGGCG
ACAGGCGATGGAATCGCATCAATGGGACGAATGGCGGAAGGCAGAAGATA
CTGAGATGCTTGGAATGGTCGAAAACTGCGTTTATAATCAGGTGGCTCGG
CCGAAGGATAAGCTCGTGATCGGCACGAAAATGTTGTACAAGCGAAAAAT
CGGGCAGGACGGCAAGGTCGAGAAGTACAAGTGTCGCCTTGCCGCTCAAG
GGTTCTGGCAGGTGGAAGGTGTGCACTACACGGAAAAGTACTCGCCCACG
CCATCAGCCGCGTCAATCCGGATGCTTTTGGCGACGGCAGCATCCAAGGA
TGATGGGGAGCTGCGCCATTTCGACGCAGAGCAGGAGTTTTTGAAGGCGG
ATATTGACGAGGAGATATACATAAAGGTCCCCGAGGAGTTCCAGGAGTTT
CCGGGGGCAGTGGGACGGCTTAATAAGGCCATTTACGGACTCGTGCAGGC
GGGGAGGTGCTGGAATAATAAGTTCTGTGACGACATGACGGCGATTGGAT
CCGAGCAGGCAAAGGCGGACCCGTGCGTGTTCCGCAAGGTCGTTGACGAC
AAAGCGACGGTGGATAGATTCGCGGCCGAGCTCGAGCAGAAGTTTAAGTT
GAAGGACATGGGGGACGCTGAATACTACATGGGTTGTCACATCACCAGGA
ACCGCAAGACGCGTGAGTTGAAGTTCGACCAACACCTGTACGTGGAGTCA
ATGGTAAAGAGATTCGATGTCAAGAAGGAAGCCAAGATACTGGCTGCGTC
GGGGATGCCGACGCTCTCAAAGGCGGATGAGCCGCAACACCCAGAGGAGA
AGGAAGAGATGAAGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCATA
CAAAGCGACGGTGGATAGATTCGCGGCCGAGCTCGAGCAGAAGTTTAAGT
TGAAGGACATGGGGGACGCTGAATACTACATGGGTTGTCACATCACCAGG
AACCGCAAGACGCGTGAGTTGAAGTTCGACCAACACCTGTACGTGGAGTC
AATGGTAAAGAGATTCGATGTCAAGAAGGAAGCCAAGATACTGGCTGCGT
CGGGGATGCCGACGCTCTCAAAGGCGGATGAGCCGCAACACCCAGAGGAG
AAGGAAGAGATGAAGATGTTCCCGTACCGAGAGGCAGTGGGGGCGCTCAT
GATGCAAGAAGTAACAGCAGCAGGTACCTCGGAGGCAGAGTACGTTGCCT
TATCGGAGGTAGTGAAGGATGTACTATTTTTGAGACAGGTGCAGGAGTTC
ATGGAACCATCGATGAGGGTCGGTGCGGTAGATGTATTTGAAGATAATGA
GGGGGCCATCAGGCTGGCCACAAACAAGCATGCTAGCCGTAGGACTAAGC
ATATTGATGTAAAGCATCATCTAGGGAGGGACGCGTCTGACGCGCAAAGG
GTTAGAGTAGCGTACGTAAGGTCAGAAGATCAACACGCGGATTTGCTCAC
GAAACCGCTAGACGTGAAAACGTTCGATGCAAGAAGTAACAGCAGCAGGT
ACCTCGGAGGCAGAGTACGTTGCCTTATCGGAGGTAGTGAAGGATGTACT
ATTTTTGAGACAGGTGCAGGAGTTCATGGAACCATCGATGAGGGTCGGTG
CGGTAGATGTATTTGAAGATAATGAGGGGGCCATCAGGCTGGCCACAAAC
AAGCATGCTAGCCGTAGGACTAAGCATATTGATGTAAAGCATCATCTAGG
GAGGGACGCGTCTGACGCGCAAAGGGTTAGAGTAGCGTACGTAAGGTCAG
AAGATCAACACGCGGATTTGCTCACGAAACCGCTAGACGTGAAAACGTTC
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