mRNA_F-serratus_M_contig1416.3012.1 (mRNA) Fucus serratus male
|
Overview
Homology
BLAST of mRNA_F-serratus_M_contig1416.3012.1 vs. uniprot
Match: A0A6H5K3F2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3F2_9PHAE) HSP 1 Score: 325 bits (832), Expect = 2.500e-107 Identity = 155/244 (63.52%), Postives = 185/244 (75.82%), Query Frame = 1
Query: 1 IPRERRVWSEYIKPMLADRTFRLRFRMEYDDFICLVTWLRPALERDGKMGDKRNGAIPVEFQVAMGIRWLAGASVYELMDGHVIARSTAYAVVRRVINAINKLSRMDCVWPSGNAVERAAAGFKNRSTNDIITRAVGAMDGLFIRLRRPSLRDHPLPTRFYSGHKKGFGMNFQGICNANYEIIAWTMNCPGSQNDRTAFSCSGFSKLLRDLPEGFYVLGDAAYPPSDRVLVPFPGTSLDTWQDS 732
+ RERR W Y KPM+ D TFRLRFRM+Y +F L LRP LER+ +MG RNG IPVEFQ+AM +R+LAG SV+E+MDG+VIARSTAYA+V RVI+AIN+ +DCVWP G ++ RSTN +I VGAMDGLF+R+ +PSLR H P FYSGHKKGFGMNFQG+CNA YEIIAWTMNCPGS NDRTAF S F +L+ LP G Y++GDAAYP SD+VLVP+PGTSL QD+
Sbjct: 46 VRRERRSWYTYAKPMVQDGTFRLRFRMDYTEFALLADMLRPKLERNERMGALRNGVIPVEFQLAMALRFLAGGSVFEVMDGNVIARSTAYAIVHRVIDAINQTRELDCVWPEGEDALDQCGMYRRRSTNGVIRMCVGAMDGLFVRMTQPSLRRHVNPRSFYSGHKKGFGMNFQGVCNARYEIIAWTMNCPGSCNDRTAFKHSVFGTVLKTLPPGAYIVGDAAYPASDQVLVPYPGTSLTRSQDA 289
BLAST of mRNA_F-serratus_M_contig1416.3012.1 vs. uniprot
Match: A0A6H5K6M2_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6M2_9PHAE) HSP 1 Score: 314 bits (805), Expect = 3.780e-103 Identity = 151/242 (62.40%), Postives = 186/242 (76.86%), Query Frame = 1
Query: 7 RERRVWSEYIKPMLADRTFRLRFRMEYDDFICLVTWLRPALERDGKMGDKRNGAIPVEFQVAMGIRWLAGASVYELMDGHVIARSTAYAVVRRVINAINKLSRMDCVWPSGNAVERAAAGFKNRSTNDIITRAVGAMDGLFIRLRRPSLRDHPLPTRFYSGHKKGFGMNFQGICNANYEIIAWTMNCPGSQNDRTAFSCSGFSKLLRDLPEGFYVLGDAAYPPSDRVLVPFPGTSLDTWQDS 732
RERR + Y++PM+ D TFR RFRM+Y DF+ L LRP L+RD KMG RNGAIPVEFQ+AM +R+LAG SV+E+MD +VIA+STAYA+V RVI+AIN+ +++C WP G+ E A ++ RSTN +I R VGAMDGLF+RL P L+ H +P FYSGHKK FGMNFQGICNA+YEII WTMNCPGSQNDRTAF SGF LL +P +++GDAAYP S+RVLVP PGT+L QD+
Sbjct: 52 RERRSFYTYVRPMVEDNTFRKRFRMDYTDFMTLADILRPKLQRDEKMGALRNGAIPVEFQLAMTLRFLAGGSVFEVMDSNVIAKSTAYAIVHRVIDAINQTRQLNCKWPYGDDAEAQAELYRRRSTNGVIRRCVGAMDGLFVRLIPPCLKRHAVPGSFYSGHKKAFGMNFQGICNASYEIITWTMNCPGSQNDRTAFKHSGFDALLSKMPPDCFIVGDAAYPASNRVLVPDPGTALTLSQDA 293
BLAST of mRNA_F-serratus_M_contig1416.3012.1 vs. uniprot
Match: A0A6H5L6B6_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6B6_9PHAE) HSP 1 Score: 275 bits (704), Expect = 5.310e-88 Identity = 130/212 (61.32%), Postives = 161/212 (75.94%), Query Frame = 1
Query: 97 ICLVTWLRPALERDGKMGDKRNGAIPVEFQVAMGIRWLAGASVYELMDGHVIARSTAYAVVRRVINAINKLSRMDCVWPSGNAVERAAAGFKNRSTNDIITRAVGAMDGLFIRLRRPSLRDHPLPTRFYSGHKKGFGMNFQGICNANYEIIAWTMNCPGSQNDRTAFSCSGFSKLLRDLPEGFYVLGDAAYPPSDRVLVPFPGTSLDTWQDS 732
+ LV LRPAL+++ +MG RNGAIPVE QVAM +RWLAG S+YE MDGHVIARSTAY V VINA+N ++C WP G RAA F+NRS+ D++ + VGA DGLF+R+ +PS ++ P +Y+GHKKGFGMNFQ +C+A Y I+AW MNCPGSQNDRTAF+ SGF KLL LPEG +V+GDAAY S+RV+VPFPGTSL QD+
Sbjct: 71 LVLVDHLRPALQKNQQMGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGATDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDA 282
BLAST of mRNA_F-serratus_M_contig1416.3012.1 vs. uniprot
Match: A0A6H5JJA1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJA1_9PHAE) HSP 1 Score: 261 bits (666), Expect = 1.540e-82 Identity = 132/237 (55.70%), Postives = 164/237 (69.20%), Query Frame = 1
Query: 1 IPRERRVWSEYIKPMLADRTFRLRFRMEYDDFICLVTWLRPALERDGKMGDKRNGAIPVEFQVAMGIRWLAGASVYELMDGHVIARSTAYAVVRRVINAINKLSRMDCVWPSGNAVERAAAGFKNRSTNDIITRAVGAMDGLFIRLRRPSLRDHPLPTRFYSGHKKGFGMNFQGICNANYEIIAWTMNCPGSQNDRTAFSCSGFSKLLRDLPEGFYVLGDAAYPPSDRVLVPFPGTS 711
+ RERR + YIKPML D TF +RFRMEYDDF LV LRPAL+++ K G RNGAIPVE+QVAM +RWLAG S+YE MDGHVIARSTAY V VINA+N ++C WP G + + + D++ + VGAMDGLF+R+ +PS ++ P +Y+GHKKGFGMNFQ +C SQNDRTAF+ SGF KLL LPEG +V+G+AAY S+RV+VPFPGTS
Sbjct: 50 VARERRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQQNEKTGLLRNGAIPVEYQVAMTLRWLAGGSIYEYMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDLPEPPSFSATAALMDVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ-VC---------------SQNDRTAFNFSGFDKLLAGLPEGHFVVGNAAYGASERVVVPFPGTS 270
BLAST of mRNA_F-serratus_M_contig1416.3012.1 vs. uniprot
Match: A0A6H5KCG0_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCG0_9PHAE) HSP 1 Score: 227 bits (579), Expect = 5.470e-70 Identity = 105/173 (60.69%), Postives = 130/173 (75.14%), Query Frame = 1
Query: 214 GASVYELMDGHVIARSTAYAVVRRVINAINKLSRMDCVWPSGNAVERAAAGFKNRSTNDIITRAVGAMDGLFIRLRRPSLRDHPLPTRFYSGHKKGFGMNFQGICNANYEIIAWTMNCPGSQNDRTAFSCSGFSKLLRDLPEGFYVLGDAAYPPSDRVLVPFPGTSLDTWQDS 732
G S++E+MDG V A+STAYA+V RVI+AIN+ DCVWP G+ ++ RSTN++I VGAMDGLF+ + PSLR H P FYSGHKKGFGMNFQ +CNA Y+I AWTMNCPGS NDRTAF SGF ++L+ LP+G Y++GD AYP SD+VLVP+PGT+L QDS
Sbjct: 51 GGSIFEVMDGCVFAKSTAYAIVYRVIDAINQTREFDCVWPEGDDALDQCGVYRQRSTNNVIHMCVGAMDGLFVLIFEPSLRRHVNPRGFYSGHKKGFGMNFQAVCNARYKITAWTMNCPGSCNDRTAFKHSGFERVLKTLPKGAYIVGDGAYPASDQVLVPYPGTTLTPSQDS 223
BLAST of mRNA_F-serratus_M_contig1416.3012.1 vs. uniprot
Match: A0A6H5K540_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K540_9PHAE) HSP 1 Score: 195 bits (496), Expect = 1.130e-57 Identity = 111/244 (45.49%), Postives = 128/244 (52.46%), Query Frame = 1
Query: 1 IPRERRVWSEYIKPMLADRTFRLRFRMEYDDFICLVTWLRPALERDGKMGDKRNGAIPVEFQVAMGIRWLAGASVYELMDGHVIARSTAYAVVRRVINAINKLSRMDCVWPSGNAVERAAAGFKNRSTNDIITRAVGAMDGLFIRLRRPSLRDHPLPTRFYSGHKKGFGMNFQGICNANYEIIAWTMNCPGSQNDRTAFSCSGFSKLLRDLPEGFYVLGDAAYPPSDRVLVPFPGTSLDTWQDS 732
+ R RR + YIKPML D TF +RFRMEYDDF LV LRPAL+++ KMG RNGAIPVE+QVAM +RWLAG S YE MDGHVIARSTAY +C+A Y I+AW MNCPGSQNDRTAF+ SGF KLL LPEG +V+GDAAY S+RV+VPFPGTSL QD+
Sbjct: 50 VARVRRPFETYIKPMLQDHTFSMRFRMEYDDFRVLVDHLRPALQKNEKMGLLRNGAIPVEYQVAMTLRWLAGGSTYECMDGHVIARSTAY----------------------------------------------------------------------------------HAVCDAQYRIMAWMMNCPGSQNDRTAFNFSGFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDA 211
BLAST of mRNA_F-serratus_M_contig1416.3012.1 vs. uniprot
Match: A0A6H5JVS8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS8_9PHAE) HSP 1 Score: 191 bits (485), Expect = 4.500e-56 Identity = 105/244 (43.03%), Postives = 135/244 (55.33%), Query Frame = 1
Query: 1 IPRERRVWSEYIKPMLADRTFRLRFRMEYDDFICLVTWLRPALERDGKMGDKRNGAIPVEFQVAMGIRWLAGASVYELMDGHVIARSTAYAVVRRVINAINKLSRMDCVWPSGNAVERAAAGFKNRSTNDIITRAVGAMDGLFIRLRRPSLRDHPLPTRFYSGHKKGFGMNFQGICNANYEIIAWTMNCPGSQNDRTAFSCSGFSKLLRDLPEGFYVLGDAAYPPSDRVLVPFPGTSLDTWQDS 732
+ RERR + +IKP+L D TF +RFRMEYDDF L+ LRPAL ++ KMG R GAIPVE+Q+AM +RWLAG S+YE MDGHVIARSTAY V VINA+N ++C WP D++ + VGAMDGLF+R+ +PS ++ P +Y+GH+KG V+GDAAY S+RV+VPFPGTSL QD+
Sbjct: 50 VARERRPFETHIKPLLQDHTFSVRFRMEYDDFRVLIDHLRPALHKNEKMGLLRIGAIPVEYQIAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEARM--------------DVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHRKGV------------------------------------------------VVGDAAYGASERVVVPFPGTSLSASQDA 231
BLAST of mRNA_F-serratus_M_contig1416.3012.1 vs. uniprot
Match: A0A6H5KD49_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD49_9PHAE) HSP 1 Score: 158 bits (399), Expect = 1.040e-45 Identity = 76/128 (59.38%), Postives = 94/128 (73.44%), Query Frame = 1
Query: 145 MGDKRNGAIPVEFQVAMGIRWLAGASVYELMDGHVIARSTAYAVVRRVINAINKLSRMDCVWPSGNAVERAAAGFKNRSTNDIITRAVGAMDGLFIRLRRPSLRDHPLPTRFYSGHKKGFGMNFQGIC 528
MG RNGAIPVE QVAM +RWLAG S+YE MDGHVIARSTAY V VINA+N ++C WP G RAA F+NRS+ D++ + VGAMD LF+R+ +PS ++ P +Y+GHKKGFGMNFQ +C
Sbjct: 1 MGLLRNGAIPVEDQVAMTLRWLAGGSIYECMDGHVIARSTAYHVTSTVINALNACPELNCKWPEGEDAARAAELFRNRSSMDVVRKCVGAMDVLFVRMIKPSAKEVAEPNLYYNGHKKGFGMNFQ-VC 127
BLAST of mRNA_F-serratus_M_contig1416.3012.1 vs. uniprot
Match: A0A6H5KNF2_9PHAE (DDE Tnp4 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNF2_9PHAE) HSP 1 Score: 160 bits (405), Expect = 6.420e-45 Identity = 70/115 (60.87%), Postives = 91/115 (79.13%), Query Frame = 1
Query: 388 DIITRAVGAMDGLFIRLRRPSLRDHPLPTRFYSGHKKGFGMNFQGICNANYEIIAWTMNCPGSQNDRTAFSCSGFSKLLRDLPEGFYVLGDAAYPPSDRVLVPFPGTSLDTWQDS 732
D++ + VGAMDGLF+R+ +PS ++ P +Y+GHK GFGMNFQ +C+A Y I+AWTM+CPGSQNDRTAF+ + F KLL LPEG +V+GDAAY S+RV+VPFPGTSL QD+
Sbjct: 16 DVVRKCVGAMDGLFVRMIKPSAKEVAEPNLYYNGHKNGFGMNFQAVCDAQYRIVAWTMSCPGSQNDRTAFNFAWFDKLLAGLPEGHFVVGDAAYGASERVVVPFPGTSLSASQDA 130
BLAST of mRNA_F-serratus_M_contig1416.3012.1 vs. uniprot
Match: A0A6H5KEZ6_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEZ6_9PHAE) HSP 1 Score: 156 bits (395), Expect = 9.010e-43 Identity = 86/244 (35.25%), Postives = 139/244 (56.97%), Query Frame = 1
Query: 13 RRVWSEYIKPMLADRTFRLRFRMEYDDFICLVTWLRPALERDGKMGDKR--NGAIPVEFQVAMGIRWLAGASVYELMDGHVIARSTAYAVVRRVINAINKLSRMDCVW--PSGNAVERAAAGFKNRSTNDIITRAVGAMDGLFIRLRRPSLRDHPLPTRFYSGHKKGFGMNFQGICNANYEIIAWTMNCPGSQNDRTAFSCSGFSKLLRDLPEGFYVLGDAAYPPSDRVLVPFPGTSLDTWQDS 732
R VW ++ + + FR +RME F L L P L+R+ KR GA+P + ++A+G+R +AGAS ++ +++ T ++++ +V++AIN + + + S + R AA ++ +ST V A DGLF++ P+ + P +YSG K G+G+N Q C+ANY + + PGS ND TA++ S S +++LP GFY+LGDAAYP SD +L P+PG L +D+
Sbjct: 74 RLVWEDHAADLKKRKLFRRMYRMEEPVFNKLAGLLEPILQRNDYDARKRYRRGAVPTKIRLAIGLRMMAGASYLDVAVLFGVSKETVFSILWQVVDAINSTAEVGPFFFPQSEDECTRQAAEWEEKSTGGAFQGVVAAGDGLFVKTLAPTALNTPNVLSYYSGSKCGYGVNVQATCDANYRFCSMSCIAPGSTNDWTAWNHSDLSTAVKNLPPGFYMLGDAAYPLSDHLLTPYPGRGLPLDKDA 317 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1416.3012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1416.3012.1 >prot_F-serratus_M_contig1416.3012.1 ID=prot_F-serratus_M_contig1416.3012.1|Name=mRNA_F-serratus_M_contig1416.3012.1|organism=Fucus serratus male|type=polypeptide|length=244bp IPRERRVWSEYIKPMLADRTFRLRFRMEYDDFICLVTWLRPALERDGKMGback to top mRNA from alignment at F-serratus_M_contig1416:181068..182600- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1416.3012.1 ID=mRNA_F-serratus_M_contig1416.3012.1|Name=mRNA_F-serratus_M_contig1416.3012.1|organism=Fucus serratus male|type=mRNA|length=1533bp|location=Sequence derived from alignment at F-serratus_M_contig1416:181068..182600- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1416:181068..182600- >mRNA_F-serratus_M_contig1416.3012.1 ID=mRNA_F-serratus_M_contig1416.3012.1|Name=mRNA_F-serratus_M_contig1416.3012.1|organism=Fucus serratus male|type=CDS|length=1464bp|location=Sequence derived from alignment at F-serratus_M_contig1416:181068..182600- (Fucus serratus male)back to top |