mRNA_F-serratus_M_contig1415.3009.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1415.3009.1
Unique NamemRNA_F-serratus_M_contig1415.3009.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1415.3009.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1415contigF-serratus_M_contig1415:223182..223656 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size477
Cds size474
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929402.6878066-CDS-F-serratus_M_contig1415:223181..2236551622929402.6878066-CDS-F-serratus_M_contig1415:223181..223655Fucus serratus maleCDSF-serratus_M_contig1415 223182..223655 +
1690962835.288171-CDS-F-serratus_M_contig1415:223181..2236551690962835.288171-CDS-F-serratus_M_contig1415:223181..223655Fucus serratus maleCDSF-serratus_M_contig1415 223182..223655 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1415.3009.1prot_F-serratus_M_contig1415.3009.1Fucus serratus malepolypeptideF-serratus_M_contig1415 223182..223655 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1415.3009.1

>prot_F-serratus_M_contig1415.3009.1 ID=prot_F-serratus_M_contig1415.3009.1|Name=mRNA_F-serratus_M_contig1415.3009.1|organism=Fucus serratus male|type=polypeptide|length=158bp
DAPGDVSTDAPGDASKDAPVDVPVDADAGGANSDGPSAQGLVELGGGVAG
KVTQPSVAAAASPAITTAGSAGVESASSGVSDATVTPAVASVVQPMPPRM
SSDKAGAVEIGLDPPPSLPPSTSGNSGWYLSERNVPVDGKSLVASGDGVG
GRSDSGTG
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mRNA from alignment at F-serratus_M_contig1415:223182..223656+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1415.3009.1 ID=mRNA_F-serratus_M_contig1415.3009.1|Name=mRNA_F-serratus_M_contig1415.3009.1|organism=Fucus serratus male|type=mRNA|length=475bp|location=Sequence derived from alignment at F-serratus_M_contig1415:223182..223656+ (Fucus serratus male)
GATGCGCCTGGGGATGTGTCTACGGATGCGCCTGGGGATGCGTCTAAGGA
TGCGCCTGTGGATGTGCCTGTGGATGCGGACGCGGGCGGGGCAAACAGCG
ATGGGCCCTCGGCGCAGGGACTCGTCGAGCTTGGAGGAGGGGTGGCAGGA
AAAGTGACCCAGCCGTCGGTTGCTGCAGCAGCGTCACCGGCCATTACCAC
CGCTGGTAGCGCCGGCGTGGAATCGGCGAGCTCCGGCGTATCAGACGCGA
CTGTGACTCCTGCAGTAGCTTCCGTGGTGCAGCCGATGCCGCCCCGCATG
TCCAGTGACAAGGCTGGTGCGGTTGAGATTGGCCTTGATCCGCCCCCGTC
TCTGCCTCCCTCGACGTCCGGAAACTCCGGTTGGTACCTCAGCGAGCGAA
ACGTTCCCGTGGACGGGAAGTCTCTGGTGGCGAGCGGTGATGGTGTCGGC
GGACGCAGCGACTCAGGTACCGGTA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1415:223182..223656+

>mRNA_F-serratus_M_contig1415.3009.1 ID=mRNA_F-serratus_M_contig1415.3009.1|Name=mRNA_F-serratus_M_contig1415.3009.1|organism=Fucus serratus male|type=CDS|length=948bp|location=Sequence derived from alignment at F-serratus_M_contig1415:223182..223656+ (Fucus serratus male)
GATGCGCCTGGGGATGTGTCTACGGATGCGCCTGGGGATGCGTCTAAGGA
TGCGCCTGTGGATGTGCCTGTGGATGCGGACGCGGGCGGGGCAAACAGCG
ATGGGCCCTCGGCGCAGGGACTCGTCGAGCTTGGAGGAGGGGTGGCAGGA
AAAGTGACCCAGCCGTCGGTTGCTGCAGCAGCGTCACCGGCCATTACCAC
CGCTGGTAGCGCCGGCGTGGAATCGGCGAGCTCCGGCGTATCAGACGCGA
CTGTGACTCCTGCAGTAGCTTCCGTGGTGCAGCCGATGCCGCCCCGCATG
TCCAGTGACAAGGCTGGTGCGGTTGAGATTGGCCTTGATCCGCCCCCGTC
TCTGCCTCCCTCGACGTCCGGAAACTCCGGTTGGTACCTCAGCGAGCGAA
ACGTTCCCGTGGACGGGAAGTCTCTGGTGGCGAGCGGTGATGGTGTCGGC
GGACGCAGCGACTCAGGTACCGGTGATGCGCCTGGGGATGTGTCTACGGA
TGCGCCTGGGGATGCGTCTAAGGATGCGCCTGTGGATGTGCCTGTGGATG
CGGACGCGGGCGGGGCAAACAGCGATGGGCCCTCGGCGCAGGGACTCGTC
GAGCTTGGAGGAGGGGTGGCAGGAAAAGTGACCCAGCCGTCGGTTGCTGC
AGCAGCGTCACCGGCCATTACCACCGCTGGTAGCGCCGGCGTGGAATCGG
CGAGCTCCGGCGTATCAGACGCGACTGTGACTCCTGCAGTAGCTTCCGTG
GTGCAGCCGATGCCGCCCCGCATGTCCAGTGACAAGGCTGGTGCGGTTGA
GATTGGCCTTGATCCGCCCCCGTCTCTGCCTCCCTCGACGTCCGGAAACT
CCGGTTGGTACCTCAGCGAGCGAAACGTTCCCGTGGACGGGAAGTCTCTG
GTGGCGAGCGGTGATGGTGTCGGCGGACGCAGCGACTCAGGTACCGGT
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