mRNA_F-serratus_M_contig1415.3003.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1415.3003.1
Unique NamemRNA_F-serratus_M_contig1415.3003.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1415.3003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1415contigF-serratus_M_contig1415:76199..79342 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionsnRNA-activating protein complex, subunit 3
Ec32 orthologEc-25_003030.1
Exons5
Model size1323
Cds size513
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929403.231758-UTR-F-serratus_M_contig1415:76198..763251622929403.231758-UTR-F-serratus_M_contig1415:76198..76325Fucus serratus maleUTRF-serratus_M_contig1415 76199..76325 +
1690962835.5266492-UTR-F-serratus_M_contig1415:76198..763251690962835.5266492-UTR-F-serratus_M_contig1415:76198..76325Fucus serratus maleUTRF-serratus_M_contig1415 76199..76325 +
1622929403.2438202-UTR-F-serratus_M_contig1415:76957..770201622929403.2438202-UTR-F-serratus_M_contig1415:76957..77020Fucus serratus maleUTRF-serratus_M_contig1415 76958..77020 +
1690962835.5360081-UTR-F-serratus_M_contig1415:76957..770201690962835.5360081-UTR-F-serratus_M_contig1415:76957..77020Fucus serratus maleUTRF-serratus_M_contig1415 76958..77020 +
1622929403.2552774-UTR-F-serratus_M_contig1415:77537..777011622929403.2552774-UTR-F-serratus_M_contig1415:77537..77701Fucus serratus maleUTRF-serratus_M_contig1415 77538..77701 +
1690962835.5441122-UTR-F-serratus_M_contig1415:77537..777011690962835.5441122-UTR-F-serratus_M_contig1415:77537..77701Fucus serratus maleUTRF-serratus_M_contig1415 77538..77701 +
1622929403.2948184-UTR-F-serratus_M_contig1415:78850..790851622929403.2948184-UTR-F-serratus_M_contig1415:78850..79085Fucus serratus maleUTRF-serratus_M_contig1415 78851..79085 +
1690962835.568494-UTR-F-serratus_M_contig1415:78850..790851690962835.568494-UTR-F-serratus_M_contig1415:78850..79085Fucus serratus maleUTRF-serratus_M_contig1415 78851..79085 +
1622929403.3108032-UTR-F-serratus_M_contig1415:79121..793421622929403.3108032-UTR-F-serratus_M_contig1415:79121..79342Fucus serratus maleUTRF-serratus_M_contig1415 79122..79342 +
1690962835.5764356-UTR-F-serratus_M_contig1415:79121..793421690962835.5764356-UTR-F-serratus_M_contig1415:79121..79342Fucus serratus maleUTRF-serratus_M_contig1415 79122..79342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929403.265096-CDS-F-serratus_M_contig1415:77701..779081622929403.265096-CDS-F-serratus_M_contig1415:77701..77908Fucus serratus maleCDSF-serratus_M_contig1415 77702..77908 +
1690962835.5522168-CDS-F-serratus_M_contig1415:77701..779081690962835.5522168-CDS-F-serratus_M_contig1415:77701..77908Fucus serratus maleCDSF-serratus_M_contig1415 77702..77908 +
1622929403.2796524-CDS-F-serratus_M_contig1415:78544..788501622929403.2796524-CDS-F-serratus_M_contig1415:78544..78850Fucus serratus maleCDSF-serratus_M_contig1415 78545..78850 +
1690962835.5602443-CDS-F-serratus_M_contig1415:78544..788501690962835.5602443-CDS-F-serratus_M_contig1415:78544..78850Fucus serratus maleCDSF-serratus_M_contig1415 78545..78850 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1415.3003.1prot_F-serratus_M_contig1415.3003.1Fucus serratus malepolypeptideF-serratus_M_contig1415 77702..78850 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1415.3003.1

>prot_F-serratus_M_contig1415.3003.1 ID=prot_F-serratus_M_contig1415.3003.1|Name=mRNA_F-serratus_M_contig1415.3003.1|organism=Fucus serratus male|type=polypeptide|length=171bp
MGTLGGRTPAESRSGVEGEGTRTGPAARRDNRKKYPRLSFRIVSDAKRCG
VCKTMAADVKSYGHPLSDQVPIIACNECIDMLFYDEKQKPLTGEMAGEEP
PAVPLGAENSTVSPSRETPPTSSESSAAAMTSALVDEPLLRLEGVERGRE
GEEGGRRPKGWKLYQRVFSS*
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mRNA from alignment at F-serratus_M_contig1415:76199..79342+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1415.3003.1 ID=mRNA_F-serratus_M_contig1415.3003.1|Name=mRNA_F-serratus_M_contig1415.3003.1|organism=Fucus serratus male|type=mRNA|length=3144bp|location=Sequence derived from alignment at F-serratus_M_contig1415:76199..79342+ (Fucus serratus male)
CAGGGGGGGATGCTGGACTGAAGCATACGGCGACGGAAAGGCCTTACAAC
AAGCTGGGATCTACAACGGTGGAGCGGTGTAATCAAGGATCGATGACCAA
GCATAAATTGGGCATGGGGGACTCCGGGTGAGAGAGGCATGCATCTTTTT
TGTAGGGCTTCACATGGCTGCCGGGGCCGGCGAAATCTTGTTTTATATTT
CTCAGAAGCAGAAGAGCAGGTGGTTGTAAGGTTGCTTGGTACCGGTTGTA
GGGGAAAGCGATTCTGGCTTCCGTTCATCCTGCGTGGGGGGTAATAAGCC
ATTCTGGGAATGGTGGTCGAAGGGCGAAACTTAGGTGGGCAGCTTTTTCG
ATGCTTTTTTCCTGTAGTTATCGCGGCGAATGTACGTAATCGCGCTCGTG
GTCTTGGCGTAGGGCCAACCCCTTACGTGCTTCGCGCAACTGCTATACTG
TAGCGAGGAGACGAGGCAACGAGTCGGCCCCGATTGATCTGGCGACGTAC
CTAATGCATCTCACAGGGGGCAAAAAATGCCTCATAAATCGTTGGAAACC
TAATCCCGGGAGTACTTGCCCACTCAACTCTACACGCGAAAACCTAACCC
GAGTGTTACAACGGTTATTCCCACCCCTCACATCCTCAAAATCGAACCCT
ATTTCCGTTTCGCGTTTCGCGTCATGGTGGCGTCTGACTGCTTCGGCCAA
CCGTCGGCAAATCCTTCGTTTCCGTGCTGCAACGTGTCGGTGTCGGGGTT
GCCCTTCAGCGGAGACGTGGTCTGGGCGTCGGACATAACCGTGGGGGAGC
TCAGGCCCGTGGTTGGCGAGAGGCAAGTACAGCACCACTCCTAGCCATTG
GCACGCTCTTCCTATTTTACCTCAGTATTTCCATTTTTCGGCTGACCAAA
CAGCGGGAGATGGACGAGAGCCGTGCATATAGTGCCTTGAGAACACCTAG
AGGTGATGTTGCTCAATACCTAGAGATAGAGAAACTCGTCGAACTCCGCA
TCCGCGACACCATAAGAAGCCTTGCCACATTCGAGGAGGAGTGCCTCGAT
TAAAGGGGCCGTCAAAGTAGACCGCGCGACATAACGCGGTGTATGCCTAC
GCCTTTAGCCGATTGCTACCGACGCTTCGCATGTATCTCGATCTGCCTGA
GGTCTGTGTTTTCGTTCTAATCCAGACACGACGCTCGGTATTCGATAGCG
CATAGCACACGATCTAAAGTCGCTTGCAAGCCACGAACCGCGCGCTCCTC
TCAAGCTTTCTCTGTGCCACCCCTCCCTGTCCCTCACGTCCTCCCTTCTC
CGTTCTGCATCTCCTCTCCCGTGCGATGCATCACCTTAGGTACATGTTTG
TCCACCACTGCGACTGCAGCCACATTTTTCTGGTGTCGGACATCCGGCTG
GAGCCAACTCCGGCCACCCTTCCGTCTCCGAGCGCCGAGCCCTCCGGCGT
CCCGGCGGCTGGGCCCAGAGCCGACGGAAGCAGTAACCGTGTCGCACCTA
ACCATGGGGACGTTGGGCGGCCGGACGCCGGCAGAGTCTAGAAGCGGCGT
CGAGGGGGAAGGGACGAGGACGGGGCCCGCGGCTCGCAGGGATAACAGGA
AGAAGTATCCTCGCCTTTCGTTCAGGATAGTATCTGACGCGAAGCGCTGC
GGCGTGTGCAAGACCATGGCCGCCGACGTGAAGAGCTACGGGCACCCCTT
GTCGGACCAGGTAAGCAAGCGGGCGGGGTTACGCTGATACATGTTTTCTC
TATCTTGAGGATAGATATACCCCAACTCTCCGCCCTCGTCGATTCATTCG
TCGCGTACTTTTGACTGGGGTTTTGTTTCAGTTGCACGGTTGCTGCTCGC
CATTATGGCTCTGTGCTGGATCTTTGTAACCCTGGGTCGCGTGTTCTTGT
TCGCCCGCAACTTGTTCGGTTGTTGTTTCTGACCGACGGTTTCCTTTTTT
GATAGTTTCGTTTTGTTTTTCGCCGACGGTACGCCAACCGAGAACTGGAG
AAAAAATCAGCCACCAAGATCATTTAAGGGGGGCGCCTTTGCAAACGGAA
CGGCGCGTTCCTTCTCGCTGCTTTGAATGCTCCCACCGCAATAACACCGA
AGATCAAAACGCTCGTGTAAAGCGAAACCGTCCAAACCAGTTCCCATCGT
GGACGAAATGCCCGTCCACCGTCCCCCGTCCCCCGCCAAAAGTTACCTAC
CCCACACCCGCGCGGATTGCGTGGCTCCTTCTTTCACCACGATTTAAGGT
TGACTCGCCCGGAACGAATCGCTTTTTTCTGTGTGTTTTTTTTTACAAGC
CGCCCAAACCTGTGCGCCGTGAATGAATCACCTCCTGCCACCCCAGGTCC
CGATTATCGCGTGCAACGAGTGCATCGATATGCTCTTTTACGACGAGAAG
CAGAAGCCACTCACCGGGGAGATGGCCGGGGAAGAACCGCCCGCGGTACC
CCTGGGCGCCGAAAACAGTACCGTGTCCCCTTCAAGGGAAACGCCTCCCA
CTTCGAGTGAAAGCTCGGCGGCGGCGATGACGTCAGCCCTAGTAGATGAA
CCATTGCTTCGCTTAGAGGGGGTAGAAAGAGGGAGAGAGGGAGAGGAAGG
GGGACGTCGTCCAAAGGGATGGAAGCTTTACCAGCGCGTGTTCTCTTCTT
GACCCGGGCGTGCTTTTCTCTTGATTGCCCAAAACGCGTACGCAATAGAT
TTTCTCAGGCAATGTCTGATGTCATATTTAGATCCCGGTTTACGGTCTAC
CGGTATACGCTCCCGTTCAAGTTTATCTTGCATGTTGCGCCGCAATTGGG
ACGCTCATTTTCTGCGGTGATTTTAGTGGGGTTTCTGGTTTTTAAGCATT
ACACACCCAAAACTATAGTACATTCGATAGCAGCGAAGTTGTTGAAGGAA
CTTGGTGCATTGCCCCAGAGAAGTTGTTGAAGGAACTTGGTGCATTGCCC
CAGAGAAGTTGAGTGTGTGGTAGTCTGGTATAAGTTTCACAGCAATAAAG
ATTTAGAAGAAAAAAAACATTGGATACTAATAGGAAGAATGGGGGTTTCC
AACAAGTTGAGACGAGCGTGAATCATTCGCGTTTGTTCCGGAGGAGGGGA
GGCAAGTAACCCTCCGAGAAAAGAGAAGAGAGACTATAATAGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1415:76199..79342+

>mRNA_F-serratus_M_contig1415.3003.1 ID=mRNA_F-serratus_M_contig1415.3003.1|Name=mRNA_F-serratus_M_contig1415.3003.1|organism=Fucus serratus male|type=CDS|length=1026bp|location=Sequence derived from alignment at F-serratus_M_contig1415:76199..79342+ (Fucus serratus male)
ATGGGGACGTTGGGCGGCCGGACGCCGGCAGAGTCTAGAAGCGGCGTCGA
GGGGGAAGGGACGAGGACGGGGCCCGCGGCTCGCAGGGATAACAGGAAGA
AGTATCCTCGCCTTTCGTTCAGGATAGTATCTGACGCGAAGCGCTGCGGC
GTGTGCAAGACCATGGCCGCCGACGTGAAGAGCTACGGGCACCCCTTGTC
GGACCAGATGGGGACGTTGGGCGGCCGGACGCCGGCAGAGTCTAGAAGCG
GCGTCGAGGGGGAAGGGACGAGGACGGGGCCCGCGGCTCGCAGGGATAAC
AGGAAGAAGTATCCTCGCCTTTCGTTCAGGATAGTATCTGACGCGAAGCG
CTGCGGCGTGTGCAAGACCATGGCCGCCGACGTGAAGAGCTACGGGCACC
CCTTGTCGGACCAGGTCCCGATTATCGCGTGCAACGAGTGCATCGATATG
CTCTTTTACGACGAGAAGCAGAAGCCACTCACCGGGGAGATGGCCGGGGA
AGAACCGCCCGCGGTACCCCTGGGCGCCGAAAACAGTACCGTGTCCCCTT
CAAGGGAAACGCCTCCCACTTCGAGTGAAAGCTCGGCGGCGGCGATGACG
TCAGCCCTAGTAGATGAACCATTGCTTCGCTTAGAGGGGGTAGAAAGAGG
GAGAGAGGGAGAGGAAGGGGGACGTCGTCCAAAGGGATGGAAGCTTTACC
AGCGCGTGTTCTCTTCTTGAGTCCCGATTATCGCGTGCAACGAGTGCATC
GATATGCTCTTTTACGACGAGAAGCAGAAGCCACTCACCGGGGAGATGGC
CGGGGAAGAACCGCCCGCGGTACCCCTGGGCGCCGAAAACAGTACCGTGT
CCCCTTCAAGGGAAACGCCTCCCACTTCGAGTGAAAGCTCGGCGGCGGCG
ATGACGTCAGCCCTAGTAGATGAACCATTGCTTCGCTTAGAGGGGGTAGA
AAGAGGGAGAGAGGGAGAGGAAGGGGGACGTCGTCCAAAGGGATGGAAGC
TTTACCAGCGCGTGTTCTCTTCTTGA
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