mRNA_F-serratus_M_contig1414.2994.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1414.2994.1
Unique NamemRNA_F-serratus_M_contig1414.2994.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1414.2994.1 vs. uniprot
Match: D8LT08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT08_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.800e-16
Identity = 43/66 (65.15%), Postives = 52/66 (78.79%), Query Frame = 1 
Query:  145 RRSRGLIPDSVIAKVPRLLVDMESVLGYRVSLDEVKARCRELDHCGEGLTPEELCDACVCVLLRRA 342
            R+  GLIP+SVIAKVPRLL+D+E  +GYRV  D+ KARCRELD CGEGL  +ELCDA V +L  +A
Sbjct:   96 RQPCGLIPESVIAKVPRLLMDLEKFVGYRVFADDAKARCRELDRCGEGLNQQELCDALVSLLRLQA 161
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BLAST of mRNA_F-serratus_M_contig1414.2994.1 vs. uniprot
Match: A0A6H5KIL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIL3_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 5.750e-10
Identity = 33/57 (57.89%), Postives = 44/57 (77.19%), Query Frame = 1 
Query:  163 IPDSVIAKVPRLLVDMESVLGYRVSLDEVKARCRELDHCGEGLTPEELCDACVCVLL 333
            IPDSV AKV RL +D+E+ +G  VS +E +A  R+L++CGE LT +ELCDACVC L+
Sbjct:  440 IPDSVAAKVHRLALDLETFMGRPVSWEEAEAGVRKLENCGESLTQQELCDACVCHLV 496
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1414.2994.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LT08_ECTSI1.800e-1665.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIL3_9PHAE5.750e-1057.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1414contigF-serratus_M_contig1414:201537..204147 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size838
Cds size837
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1414.2994.1prot_F-serratus_M_contig1414.2994.1Fucus serratus malepolypeptideF-serratus_M_contig1414 201537..204147 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929400.9599733-CDS-F-serratus_M_contig1414:201536..2017221622929400.9599733-CDS-F-serratus_M_contig1414:201536..201722Fucus serratus maleCDSF-serratus_M_contig1414 201537..201722 +
1690962834.6046677-CDS-F-serratus_M_contig1414:201536..2017221690962834.6046677-CDS-F-serratus_M_contig1414:201536..201722Fucus serratus maleCDSF-serratus_M_contig1414 201537..201722 +
1622929400.9710116-CDS-F-serratus_M_contig1414:202099..2021931622929400.9710116-CDS-F-serratus_M_contig1414:202099..202193Fucus serratus maleCDSF-serratus_M_contig1414 202100..202193 +
1690962834.6187441-CDS-F-serratus_M_contig1414:202099..2021931690962834.6187441-CDS-F-serratus_M_contig1414:202099..202193Fucus serratus maleCDSF-serratus_M_contig1414 202100..202193 +
1622929400.981059-CDS-F-serratus_M_contig1414:203590..2041471622929400.981059-CDS-F-serratus_M_contig1414:203590..204147Fucus serratus maleCDSF-serratus_M_contig1414 203591..204147 +
1690962834.6319757-CDS-F-serratus_M_contig1414:203590..2041471690962834.6319757-CDS-F-serratus_M_contig1414:203590..204147Fucus serratus maleCDSF-serratus_M_contig1414 203591..204147 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1414.2994.1

>prot_F-serratus_M_contig1414.2994.1 ID=prot_F-serratus_M_contig1414.2994.1|Name=mRNA_F-serratus_M_contig1414.2994.1|organism=Fucus serratus male|type=polypeptide|length=279bp
EAVGATALGTKTNVPAPASRNAPRANTNTRGTAAALCLRDDQNCASAPRR
SRGLIPDSVIAKVPRLLVDMESVLGYRVSLDEVKARCRELDHCGEGLTPE
ELCDACVCVLLRRASYRARSCANSRGSVGGISSVSKMRRRKNLRKCDKDQ
QEEKDRKQQYQQQQQEVRGGARGTRATNKSSISKRSKKEVVVVAGARPQS
ATTLPADDGSKTNSATSHPSVEAASAESVSLESVSLESMSLESMSLESMS
LESESAESMSLESVSAESVSAESVYAESV
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mRNA from alignment at F-serratus_M_contig1414:201537..204147+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1414.2994.1 ID=mRNA_F-serratus_M_contig1414.2994.1|Name=mRNA_F-serratus_M_contig1414.2994.1|organism=Fucus serratus male|type=mRNA|length=2611bp|location=Sequence derived from alignment at F-serratus_M_contig1414:201537..204147+ (Fucus serratus male)
GAAGCTGTTGGAGCAACGGCACTGGGGACGAAGACAAACGTGCCGGCGCC
GGCGAGCAGGAACGCCCCGAGGGCAAATACAAATACACGTGGGACCGCCG
CGGCACTATGCCTTAGAGATGATCAAAACTGCGCATCCGCGCCCAGGCGC
TCACGGGGGCTCATTCCCGACAGCGTGATCGCGAAGGTATGGGGCGGAAG
AGGTCGACACGGGTTCGGGAATATCTGGACCATTTTTGCGAGCCTTCTTC
AAGGCTGGAAGACGTTAACGTATTTCCTGCCCGTGTGCGCAGATTTTTTT
TCTCTTCAGATTTTTTTCTCCCCCTCCCGCCCCCTCCCCCCTAAAATAAA
CAGTGACGATAGCGCGGGCTTTAGTTGCTCCTGCGCTACGAGCCGCGTAT
TCTATTTCCCAAGCATATCAAGAGATGTCGAGAAGACCGAACACACACAA
AACGCTCATCGCACTCCACAGTTATTTTTTTTTGGGGGGGGGGGTGGTCT
TGGGGGGAGCATGCTGGGTGAGGGGTGACTGAGCCCTACCGCCGTTACTG
TCGCCGAGAGCAGGTGCCCCGGCTGCTGGTGGACATGGAGAGTGTGCTCG
GCTACCGCGTGTCCTTGGACGAAGTCAAGGCGCGCTGCCGGGAGCTGGAC
CACTGTGGTGAGCCCGCGGAGACCGATAGAGCAGCAGCCGCGTCTCTCTT
TCCTCGACACAACCACGTGTGTGTTTGTCTTTTGTCTGACTTGTGTCTGT
ATGTCTGCAGTATGTGTTCCAGTGTGTTGTGTCAGTGTGTCATGTATGGT
CTGGCGGTTTGTCAATCAGAGTCTTGACCCACTCCCCCCTCCCCGCCGAC
CAGAAAGGGTTTCTCTTGTGCCGTGCCATTTGAAACTCTGGTCCTGTCTT
TGTTGTCGTGTGTTGGGAAGTGTGACGCAGGATTGCTCGCACAAGACAAG
CAGTTGTGTAATTTTTCTCCAGTTAGAATGACAATTATACCTAAAGCAGT
GCCTGGGGGCGTGTTCCCCTTGTTGGCAAAACCGTTCCTAGGTCTCGGTC
TTGCTTTGATTTCCGTTTTTGCTTATTATCGTATTCTTTTTAGTATGTGG
CAGGCGATAATAGGACTTCAGGTACGTACTGTACGTATTCCCGTGTGTCT
CCGTTTTGCTGTGTTTGATTTTCTCGGGTTTTTTTTTTGGGGGGGGGGGG
GGGGGTTGCCGGGGGGAGCGGGGGCGGGATTTATGTTACAATAAAAAACG
GCGCTACAGCAATAATAAGTAACAATGTTTTTCTGTAGATGTAAAGCGGA
CGAGGTTGAATCGCTAGGTAAGCGGTAAACGAGATTTCTGGCGTCTAGGG
AATGTGGGGGTGTAGCAGGCCTTTTGCCTCGCTCCAATGAATTTACACAC
ACACGTACACCCCCCCTCCCCCCCTCCCTCCCTCCCTCCTTGGGAGGACC
ATTGCGGTATTAGTAGCACTGACGAGGATGAGAGGGCTGGATTGCGTTGT
TATGTGCAACTCAATAAATACACACATACGCATAACTACTCAACAGACAC
AGACACACACACACATTCACTGAGGGGTGCGAGTAGCTCAGACTGGTTAC
TTGTAGCATGACAGGGCCAGATTGCGCGGTTATGCGTAATTAAAAAAATA
CCTGTTTAAATGCCAGGAAAAGGTTTTGTATTTTCAGCCGATGATCCCCA
CCTATTTAGACGTTTTGACGTTTTCCCCCAGACTGGGGGATGCTCAGAAG
GTCTGGATGCGTTCAGATTCTTCTATAAAACACCTACACATACACACACT
TATTTTTCGCTGACCAAAAAAATAAATACTCCGGGGCATGATATGATAAG
CATTGCACTGGTGCATGTCGGAAGTCAATTTGAGCTCTAGTCTTTCAGAG
AAGGCCAAGCTTCGCTTGACAAGACCCCCATATCTTCGTTTCTTTGTTTA
TCTCTCTCGCGTTCGCTCTGCTTCCCGACCGACGGAATATATGATTGGGT
TCATCTACCGACGGAATCCATGATTCCATTTAATCCTTCGACGGAAATCT
CCAGGGGAGGGGCTGACCCCCGAGGAGCTCTGCGACGCCTGCGTGTGCGT
GCTTCTCCGTCGAGCCAGCTACCGCGCCCGCAGTTGCGCCAACAGCCGCG
GCAGTGTCGGCGGTATCAGTAGCGTTAGCAAGATGAGGCGAAGAAAAAAC
CTTAGGAAGTGCGACAAAGATCAACAAGAGGAGAAGGATAGGAAGCAGCA
GTATCAGCAGCAGCAGCAAGAAGTGAGGGGTGGGGCGCGTGGCACGCGAG
CCACGAACAAATCATCAATCTCGAAAAGAAGTAAAAAAGAAGTGGTGGTC
GTCGCAGGGGCAAGGCCACAGAGCGCGACGACCTTGCCGGCGGACGATGG
GTCGAAGACGAATTCGGCGACCTCTCATCCGAGTGTGGAGGCGGCCTCTG
CGGAATCAGTGTCTTTGGAATCGGTGTCTTTGGAATCGATGTCTTTGGAA
TCGATGTCTTTGGAATCGATGTCTTTGGAATCGGAGTCTGCGGAATCGAT
GTCTTTGGAATCGGTCTCTGCGGAATCGGTCTCTGCGGAATCGGTGTATG
CGGAGTCGGTG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1414:201537..204147+

>mRNA_F-serratus_M_contig1414.2994.1 ID=mRNA_F-serratus_M_contig1414.2994.1|Name=mRNA_F-serratus_M_contig1414.2994.1|organism=Fucus serratus male|type=CDS|length=1674bp|location=Sequence derived from alignment at F-serratus_M_contig1414:201537..204147+ (Fucus serratus male)
GAAGCTGTTGGAGCAACGGCACTGGGGACGAAGACAAACGTGCCGGCGCC
GGCGAGCAGGAACGCCCCGAGGGCAAATACAAATACACGTGGGACCGCCG
CGGCACTATGCCTTAGAGATGATCAAAACTGCGCATCCGCGCCCAGGCGC
TCACGGGGGCTCATTCCCGACAGCGTGATCGCGAAGGAAGCTGTTGGAGC
AACGGCACTGGGGACGAAGACAAACGTGCCGGCGCCGGCGAGCAGGAACG
CCCCGAGGGCAAATACAAATACACGTGGGACCGCCGCGGCACTATGCCTT
AGAGATGATCAAAACTGCGCATCCGCGCCCAGGCGCTCACGGGGGCTCAT
TCCCGACAGCGTGATCGCGAAGGTGCCCCGGCTGCTGGTGGACATGGAGA
GTGTGCTCGGCTACCGCGTGTCCTTGGACGAAGTCAAGGCGCGCTGCCGG
GAGCTGGACCACTGTGGTGCCCCGGCTGCTGGTGGACATGGAGAGTGTGC
TCGGCTACCGCGTGTCCTTGGACGAAGTCAAGGCGCGCTGCCGGGAGCTG
GACCACTGTGGGGAGGGGCTGACCCCCGAGGAGCTCTGCGACGCCTGCGT
GTGCGTGCTTCTCCGTCGAGCCAGCTACCGCGCCCGCAGTTGCGCCAACA
GCCGCGGCAGTGTCGGCGGTATCAGTAGCGTTAGCAAGATGAGGCGAAGA
AAAAACCTTAGGAAGTGCGACAAAGATCAACAAGAGGAGAAGGATAGGAA
GCAGCAGTATCAGCAGCAGCAGCAAGAAGTGAGGGGTGGGGCGCGTGGCA
CGCGAGCCACGAACAAATCATCAATCTCGAAAAGAAGTAAAAAAGAAGTG
GTGGTCGTCGCAGGGGCAAGGCCACAGAGCGCGACGACCTTGCCGGCGGA
CGATGGGTCGAAGACGAATTCGGCGACCTCTCATCCGAGTGTGGAGGCGG
CCTCTGCGGAATCAGTGTCTTTGGAATCGGTGTCTTTGGAATCGATGTCT
TTGGAATCGATGTCTTTGGAATCGATGTCTTTGGAATCGGAGTCTGCGGA
ATCGATGTCTTTGGAATCGGTCTCTGCGGAATCGGTCTCTGCGGAATCGG
TGTATGCGGAGTCGGTGGGGAGGGGCTGACCCCCGAGGAGCTCTGCGACG
CCTGCGTGTGCGTGCTTCTCCGTCGAGCCAGCTACCGCGCCCGCAGTTGC
GCCAACAGCCGCGGCAGTGTCGGCGGTATCAGTAGCGTTAGCAAGATGAG
GCGAAGAAAAAACCTTAGGAAGTGCGACAAAGATCAACAAGAGGAGAAGG
ATAGGAAGCAGCAGTATCAGCAGCAGCAGCAAGAAGTGAGGGGTGGGGCG
CGTGGCACGCGAGCCACGAACAAATCATCAATCTCGAAAAGAAGTAAAAA
AGAAGTGGTGGTCGTCGCAGGGGCAAGGCCACAGAGCGCGACGACCTTGC
CGGCGGACGATGGGTCGAAGACGAATTCGGCGACCTCTCATCCGAGTGTG
GAGGCGGCCTCTGCGGAATCAGTGTCTTTGGAATCGGTGTCTTTGGAATC
GATGTCTTTGGAATCGATGTCTTTGGAATCGATGTCTTTGGAATCGGAGT
CTGCGGAATCGATGTCTTTGGAATCGGTCTCTGCGGAATCGGTCTCTGCG
GAATCGGTGTATGCGGAGTCGGTG
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