mRNA_F-serratus_M_contig1412.2989.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1412.2989.1 vs. uniprot
Match: D7G0W9_ECTSI (Peptidyl-prolyl cis-trans isomerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0W9_ECTSI) HSP 1 Score: 343 bits (881), Expect = 7.430e-114 Identity = 181/284 (63.73%), Postives = 204/284 (71.83%), Query Frame = 2
Query: 113 MQAFRAGALAQGSLQVIRGGSRGSSGLGWYQRYKRLGPDAFRKARAPNPFDWET-------SSGENSGGKGPALDKRRRRRAFFDMAVDGVAAGRVEFELAADILPVTCENFLRLCKGVDVAPPVKRAVRVSITGEVLEQDEAEEEQDAARDPKMT-------LGYEGTLIHQVATGTGIMGGDVEGTGGSRSHSGF-GTRFFPDEAFLIPHTAPGLLTTANPGVHRNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALYGMYSIRGKPVSEITVAKCGEI 919
MQA R LAQGSLQ +RGG+R S+G GWYQRY+R+GPDAFRKARAPNPFDW+T +G +G + +R RRRAFF M+VDGV AGRVEFELA+D+LPVT ENFLRLC GV VA A + LGY+G++IH+V TGTGIMGGDVEG GG RSHS F G RFFPDEAFLIPHTAPGLLT AN G+H NGSQFYITTE AGHLDGRSVAFGRVT G+EVVRA+YGMYSIRGKPVSEIT+ +CGEI
Sbjct: 1 MQALRTSVLAQGSLQAVRGGTRASTGRGWYQRYQRMGPDAFRKARAPNPFDWDTPLAPPAPEAGAEERQQGGSGRRRPRRRAFFAMSVDGVPAGRVEFELASDLLPVTSENFLRLCNGVTVASAAGEATLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELGYKGSVIHRVVTGTGIMGGDVEGYGGKRSHSAFSGMRFFPDEAFLIPHTAPGLLTMANSGLHTNGSQFYITTEAAGHLDGRSVAFGRVTKGLEVVRAVYGMYSIRGKPVSEITIEECGEI 284
BLAST of mRNA_F-serratus_M_contig1412.2989.1 vs. uniprot
Match: A0A836C8D9_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8D9_9STRA) HSP 1 Score: 238 bits (606), Expect = 3.490e-73 Identity = 124/269 (46.10%), Postives = 165/269 (61.34%), Query Frame = 2
Query: 113 MQAFRAGALAQGSLQVIRGGSRGSSGLGWYQRYKRLGPDAFRKARAPNPFDWETSSGENSGGKGPALDKRRRRRAFFDMAVDGVAAGRVEFELAADILPVTCENFLRLCKGVDVAPPVKRAVRVSITGEVLEQDEAEEEQDAARDPKMTLGYEGTLIHQVATGTGIMGGDVEGTGGSRSHSGFGTRFFPDEAFLIPHTAPGLLTTANPGVHRNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALYGMYSIRGKPVSEITVAKCGEI 919
MQAFR + G+L+ R +RGS G GWY ++K+ G DAF + R P PFDW+ + PA R+RA+ ++A+ G G+VEFELA+D+LPVTC+NFL+LC G P D A L Y+GT IH +A G G+MGGDVEG G +SHSG G R+F DE F IPH++ GLLT AN G+ NGSQFY+T PA H+DGRSVAFGRV GM+VVR ++G++S++ KPVS++ + C +
Sbjct: 1 MQAFRVATVVPGALRHTRM-ARGSRGWGWYLKHKQQGDDAFIRDRPPTPFDWDAA---------PAAP---RKRAYVEIAIAGENIGKVEFELASDLLPVTCKNFLQLCTGAATGP------------------------DGA-----PLTYKGTPIHTLAKGVGLMGGDVEGGNGKKSHSGLGKRYFRDEGFFIPHSSEGLLTMANSGIDTNGSQFYVTIGPAPHMDGRSVAFGRVVGGMDVVRRVFGLFSVKAKPVSKVVITDCDAL 227
BLAST of mRNA_F-serratus_M_contig1412.2989.1 vs. uniprot
Match: W7TUT6_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TUT6_9STRA) HSP 1 Score: 199 bits (506), Expect = 1.100e-57 Identity = 107/267 (40.07%), Postives = 142/267 (53.18%), Query Frame = 2
Query: 173 SRGSSGLGWYQRYKRLGPDAFRKARAPNPFDWETSSGENSGGKGPALDKRRRRRAFFDMAVDGVAAGRVEFELAADILPVTCENFLRLCKGVDVAPPVKRAVRVSITGEVLEQDEAEEEQDAARDPKMTLGYEGTLIHQVATGTGIMGGDV---------------EGTGGSRSHSGFGTRFFPDEAFLIPHTAPGLLTTANPGVHRNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALYGMYSIRGKPVSEITVAKCGEIAAN 928
SRG +G GWY+ YK GP+ F++ R P PFDW S P + RR + F +++D GR+ ELA DILP+ ENF LC+G + K LGY G+ IH+V G GI+GGD+ + GG+ +HSG G RFFPDE+F IPHT PGLL+ + G HRNGS F+I+T HLDGRSV FGRV G+EV+ A+ Y+IRG+PV+ + V + G + A
Sbjct: 32 SRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSPPSTAT-----PPSEAPRRSKVFLGISLDKEPLGRIVLELADDILPLAAENFRLLCQGAG-------------------------REGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVMEAE 268
BLAST of mRNA_F-serratus_M_contig1412.2989.1 vs. uniprot
Match: A0A4D9CP74_9STRA (PPIase cyclophilin-type domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CP74_9STRA) HSP 1 Score: 199 bits (507), Expect = 1.940e-56 Identity = 107/267 (40.07%), Postives = 143/267 (53.56%), Query Frame = 2
Query: 173 SRGSSGLGWYQRYKRLGPDAFRKARAPNPFDWETSSGENSGGKGPALDKRRRRRAFFDMAVDGVAAGRVEFELAADILPVTCENFLRLCKGVDVAPPVKRAVRVSITGEVLEQDEAEEEQDAARDPKMTLGYEGTLIHQVATGTGIMGGDV---------------EGTGGSRSHSGFGTRFFPDEAFLIPHTAPGLLTTANPGVHRNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALYGMYSIRGKPVSEITVAKCGEIAAN 928
SRG +G GWY+ YK GP+ F++ R P PFDW S + + P RR + F +++D GR+ ELA DILP+ ENF LC+G + K LGY G+ IH+V G GI+GGD+ + GG+ +HSG G RFFPDE+F IPHT PGLL+ + G HRNGS F+I+T HLDGRSV FGRV G+EV+ A+ Y+IRG+PV+ + V + G + A
Sbjct: 147 SRGDNGRGWYELYKEAGPEGFKRYRPPTPFDWSRPSTATTPSEAP-----RRSKVFLGLSLDKEPLGRIVLELADDILPLAAENFRLLCQGAG-------------------------REGGREGGKTGLGYAGSRIHRVVKGAGIVGGDLSTARAPPSSGAIRPRQRQGGAGNHSGLGPRFFPDESFQIPHTGPGLLSMVSAGAHRNGSVFHISTHACPHLDGRSVVFGRVVGGVEVLEAVANTYTIRGRPVAVVRVEEAGVMEAE 383
BLAST of mRNA_F-serratus_M_contig1412.2989.1 vs. uniprot
Match: A0A7S2BM91_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BM91_9STRA) HSP 1 Score: 184 bits (468), Expect = 6.010e-52 Identity = 103/248 (41.53%), Postives = 133/248 (53.63%), Query Frame = 2
Query: 176 RGSSGLGWYQRYKRLGPDAFRKARAPNPFDWETSSGENSGGKGPALDKRRRRRAFFDMAVDGVAAGRVEFELAADILPVTCENFLRLCKGVDVAPPVKRAVRVSITGEVLEQDEAEEEQDAARDPKMTLGYEGTLIHQVATGTGIMGGDVEGTGGSRSHSGFGTRFFPDEAFLIPHTAPGLLTTANPGVHRNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALYGMYSIRGKPVSEITVAKCGEI 919
+GSSG GWY++Y++ G + FRK P PFDW + + + D++VDG GRVE EL +ILP+T NF +LC G E D L Y T IH V + I+ GDVE G SHS GTR+F DEA ++PHT G+++ N GV NGSQFYITT P+ LDG SVAFGRVTSGM+VV ++ ++SIRG PVS +TV G +
Sbjct: 65 QGSSGRGWYKKYEKEGEEGFRKYNPPTPFDWSEAGATSL--------------VYLDVSVDGADPGRVEIELLDEILPITTTNFKKLCTG--------------------------ENPDG-------LSYADTPIHHVVKDSAIVAGDVELKTGKGSHSALGTRYFDDEALVMPHTEAGIVSMVNGGVDTNGSQFYITTAPSPQLDGYSVAFGRVTSGMDVVGSITNLFSIRGVPVSTVTVTAAGVL 265
BLAST of mRNA_F-serratus_M_contig1412.2989.1 vs. uniprot
Match: A0A7S3NRJ3_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NRJ3_9STRA) HSP 1 Score: 172 bits (436), Expect = 3.090e-47 Identity = 101/253 (39.92%), Postives = 135/253 (53.36%), Query Frame = 2
Query: 179 GSSGLGWYQRYKRLGPDAFRKARAPNPFDWETSSGENSGGKGPALDKRRRRRAFFDMAVDGVAAGRVEFELAADILPVTCENFLRLCKGVDVAPPVKRAVRVSITGEVLEQDEAEEEQDAARDPKMTLGYEGT-LIHQVATGTGIMGGDVEGTGGSRSHSGFGTRFFPDEAFLIPHTAPGLLTTANPGVHRNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALY-GMYSIRGKPVSEITVAKCGEIAANP 931
GS G GWY++YK+ GPD+FR+ P PFD++ + + G +R FFD+ V GR+EFEL ++LPVTCENF LC G AP R Y+G+ I +A G IMGGDV GGS HS + R++ DE F +PH+ G+L++AN G+ NGSQFYIT + H+DGR VAFGRV +G +V+ L +Y RG P IT+ G +A NP
Sbjct: 44 GSPGHGWYEKYKKFGPDSFRRWERPKPFDFDAADAQVLG---------KRTYCFFDIGVAESKVGRIEFELLDELLPVTCENFKLLCSGF--APSGFR-------------------------------YKGSHFIRLMARGAAIMGGDVATAGGS--HSAWKQRYYADEGFFVPHSQAGILSSANAGIDTNGSQFYITLKECPHMDGRCVAFGRVATGYDVITGLIKDVYMQRGIPTKSITILDAG-LAQNP 251
BLAST of mRNA_F-serratus_M_contig1412.2989.1 vs. uniprot
Match: A0A7S4EDH8_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4EDH8_9STRA) HSP 1 Score: 157 bits (397), Expect = 4.050e-42 Identity = 98/251 (39.04%), Postives = 128/251 (51.00%), Query Frame = 2
Query: 179 GSSGLGWYQRYKRLGPDAF-RKARAPNPFDWETSSGENSGGKGPALDKRRRRRAFFDMAVDGVAAGRVEFELAADILPVTCENFLRLCKGVDVAPPVKRAVRVSITGEVLEQDEAEEEQDAARDPKMTLGYEGTLIHQVATGTGIMGGDV-EGTGGSRSHSGFGTR-FFPDEAFLIPHTAPGLLTTANPGVHRNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALY-GMYSIRGKPVSEITVAKCGEI 919
G+ GWYQRY GP+ F R + FDW+ A + + R R F +++VDG AGR+ EL ++LP T ENF LC G DA P + T +V G G++GG + + GGSRS F R F DE F +PH PGLLT A+ GV NGSQFY+T EPA HLDGR VAFGR+ G++VVR L+ +Y+ RG PV ++ V CG +
Sbjct: 19 GTHSRGWYQRYAARGPEGFLRPSPGGESFDWD------------APEAKTRSRCFLEVSVDGQRAGRLVVELLDELLPETSENFRLLCSG-----------------------------DA---PSGASYAQSTFARRVVKGVGLLGGALPDAPGGSRS--AFADRPLFADEGFFVPHAEPGLLTMASSGVDGNGSQFYVTIEPAPHLDGRCVAFGRLVEGLDVVRHLHDSLYTQRGVPVEKVVVEACGVV 223
BLAST of mRNA_F-serratus_M_contig1412.2989.1 vs. uniprot
Match: F0Y6J0_AURAN (Peptidyl-prolyl cis-trans isomerase (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y6J0_AURAN) HSP 1 Score: 152 bits (384), Expect = 5.360e-41 Identity = 90/199 (45.23%), Postives = 111/199 (55.78%), Query Frame = 2
Query: 332 RAFFDMAVDGVAAGRVEFELAADILPVTCENFLRLCKGVDVAPPVKRAVRVSITGEVLEQDEAEEEQDAARDPKMTLGYEGT-LIHQVATGTGIMGGDVEGTGGSRSHSGF-GTRFFPDEAFLIPHTAPGLLTTANPGVHRNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALYG-MYSIRGKPVSEITVAKCGEI 919
R FFD+AVDG AAGR+E EL ++LP TCENF LC D AP GY G L +V G G++GG V+ GGS HS F G R F DE F +PH PGLL+ AN GV NGSQFY+TT A H+DGR VAFGRV +G++VV+ L +Y+ RG PV + +A CG +
Sbjct: 1 RCFFDVAVDGEAAGRIELELLDELLPETCENFRLLCG--DGAPS-------------------------------GFGYAGANLARRVVKGVGLLGGVVDAPGGS--HSAFAGRRVFADEGFFVPHAEPGLLSMANAGVDTNGSQFYLTTAAAPHMDGRCVAFGRVAAGLDVVQTLADTLYTQRGVPVEHVEIAACGTL 164
BLAST of mRNA_F-serratus_M_contig1412.2989.1 vs. uniprot
Match: A0A2R5GDR4_9STRA (Peptidyl-prolyl cis-trans isomerase n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GDR4_9STRA) HSP 1 Score: 140 bits (354), Expect = 1.520e-36 Identity = 77/184 (41.85%), Postives = 100/184 (54.35%), Query Frame = 2
Query: 368 AGRVEFELAADILPVTCENFLRLCKGVDVAPPVKRAVRVSITGEVLEQDEAEEEQDAARDPKMTLGYEGTLIHQVATGTGIMGGDVEGTGGSRSHSGFGTRFFPDEAFLIPHTAPGLLTTANPGVHRNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALYGMYSIRGKPVSEITVAKCGEI 919
AGRVE ELA DI+PVT ENFLRLC G A D K T Y+GT +HQ+ + ++ GDV G HS F +++F DE + H PG+L+ AN G H N S F+IT +P HLDGR V FGRVTSGM+V+ L G ++G+P S I ++ CG +
Sbjct: 15 AGRVEVELADDIVPVTAENFLRLCDG----------------------------DTALADEKFT--YKGTELHQIMRDSWLLMGDVGHKDGRGGHSAFDSKYFDDEGYFFRHAKPGILSMANAGAHMNASCFFITLKPCLHLDGRHVPFGRVTSGMDVLEDLAGDLIVKGRPTSPIVISDCGSL 168
BLAST of mRNA_F-serratus_M_contig1412.2989.1 vs. uniprot
Match: A0A8J5WVC4_ZIZPA (PPIase cyclophilin-type domain-containing protein n=1 Tax=Zizania palustris TaxID=103762 RepID=A0A8J5WVC4_ZIZPA) HSP 1 Score: 132 bits (331), Expect = 4.960e-33 Identity = 78/198 (39.39%), Postives = 102/198 (51.52%), Query Frame = 2
Query: 332 RAFFDMAVDGVAAGRVEFELAADILPVTCENFLRLCKGVDVAPPVKRAVRVSITGEVLEQDEAEEEQDAARDPKMTLGYEGTLIHQVATGTGIMGGDV---EGTGGSRSHSGFGTRFFPDEAFLIPHTAPGLLTTANPGVHRNGSQFYITTEPAGHLDGRSVAFGRVTSGMEVVRALYGMYSIRGKPVSEITVAKCGE 916
R F D+ +D GRVE EL AD++P T ENF LC G E+ +R L Y+G+ H+V G GGD+ GTGG + G R FPDE F +PH PG+++ AN G + NGSQF+IT + A LD R VAFGRV +GM+ VRA+ S GK V + +A CG+
Sbjct: 10 RVFLDIDIDDEKMGRVEIELFADMVPRTAENFRLLCTG---------------------------ERGNSRHSGKKLHYKGSTFHRVVPGFMCQGGDITVGNGTGGEPALPDAG-RHFPDEGFKVPHDGPGVVSMANAGPNSNGSQFFITVDKAPWLDNRHVAFGRVVTGMDTVRAIDSAGSSSGKTVKPVVIADCGQ 179 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1412.2989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1412.2989.1 >prot_F-serratus_M_contig1412.2989.1 ID=prot_F-serratus_M_contig1412.2989.1|Name=mRNA_F-serratus_M_contig1412.2989.1|organism=Fucus serratus male|type=polypeptide|length=276bp MQAFRAGALAQGSLQVIRGGSRGSSGLGWYQRYKRLGPDAFRKARAPNPFback to top mRNA from alignment at F-serratus_M_contig1412:199219..210263+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1412.2989.1 ID=mRNA_F-serratus_M_contig1412.2989.1|Name=mRNA_F-serratus_M_contig1412.2989.1|organism=Fucus serratus male|type=mRNA|length=11045bp|location=Sequence derived from alignment at F-serratus_M_contig1412:199219..210263+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1412:199219..210263+ >mRNA_F-serratus_M_contig1412.2989.1 ID=mRNA_F-serratus_M_contig1412.2989.1|Name=mRNA_F-serratus_M_contig1412.2989.1|organism=Fucus serratus male|type=CDS|length=1656bp|location=Sequence derived from alignment at F-serratus_M_contig1412:199219..210263+ (Fucus serratus male)back to top |