mRNA_F-serratus_M_contig1411.2975.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1411.2975.1
Unique NamemRNA_F-serratus_M_contig1411.2975.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1411.2975.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1411contigF-serratus_M_contig1411:52672..53001 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size330
Cds size330
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929397.016578-CDS-F-serratus_M_contig1411:52671..530011622929397.016578-CDS-F-serratus_M_contig1411:52671..53001Fucus serratus maleCDSF-serratus_M_contig1411 52672..53001 +
1690962833.325615-CDS-F-serratus_M_contig1411:52671..530011690962833.325615-CDS-F-serratus_M_contig1411:52671..53001Fucus serratus maleCDSF-serratus_M_contig1411 52672..53001 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1411.2975.1prot_F-serratus_M_contig1411.2975.1Fucus serratus malepolypeptideF-serratus_M_contig1411 52672..53001 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1411.2975.1

>prot_F-serratus_M_contig1411.2975.1 ID=prot_F-serratus_M_contig1411.2975.1|Name=mRNA_F-serratus_M_contig1411.2975.1|organism=Fucus serratus male|type=polypeptide|length=110bp
PIKCQSRLWPGTKVDGSYRGDKPLLRPTGIEIATNSYVTLQAMAPTNIKT
VHQTSLLQIVSSVDRIELLSSTHPRPAFSATKRTNYALTSFDQQVQASQG
HTSYKNKET*
back to top

mRNA from alignment at F-serratus_M_contig1411:52672..53001+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1411.2975.1 ID=mRNA_F-serratus_M_contig1411.2975.1|Name=mRNA_F-serratus_M_contig1411.2975.1|organism=Fucus serratus male|type=mRNA|length=330bp|location=Sequence derived from alignment at F-serratus_M_contig1411:52672..53001+ (Fucus serratus male)
CCTATCAAATGCCAATCCCGCTTGTGGCCAGGTACCAAGGTCGACGGGTC
ATATCGTGGTGACAAACCGCTACTCAGACCGACAGGGATCGAAATCGCGA
CAAATAGTTATGTGACTTTACAAGCAATGGCACCGACCAATATCAAAACG
GTTCATCAAACCTCCCTACTCCAAATCGTGAGCAGCGTCGATCGAATCGA
ATTGCTGTCGTCTACCCACCCACGACCAGCGTTTTCAGCAACAAAGCGGA
CAAATTACGCTCTAACCAGTTTCGATCAACAAGTCCAAGCTTCTCAAGGC
CACACATCGTACAAAAATAAGGAAACTTGA
back to top

Coding sequence (CDS) from alignment at F-serratus_M_contig1411:52672..53001+

>mRNA_F-serratus_M_contig1411.2975.1 ID=mRNA_F-serratus_M_contig1411.2975.1|Name=mRNA_F-serratus_M_contig1411.2975.1|organism=Fucus serratus male|type=CDS|length=660bp|location=Sequence derived from alignment at F-serratus_M_contig1411:52672..53001+ (Fucus serratus male)
CCTATCAAATGCCAATCCCGCTTGTGGCCAGGTACCAAGGTCGACGGGTC
ATATCGTGGTGACAAACCGCTACTCAGACCGACAGGGATCGAAATCGCGA
CAAATAGTTATGTGACTTTACAAGCAATGGCACCGACCAATATCAAAACG
GTTCATCAAACCTCCCTACTCCAAATCGTGAGCAGCGTCGATCGAATCGA
ATTGCTGTCGTCTACCCACCCACGACCAGCGTTTTCAGCAACAAAGCGGA
CAAATTACGCTCTAACCAGTTTCGATCAACAAGTCCAAGCTTCTCAAGGC
CACACATCGTACAAAAATAAGGAAACTTGACCTATCAAATGCCAATCCCG
CTTGTGGCCAGGTACCAAGGTCGACGGGTCATATCGTGGTGACAAACCGC
TACTCAGACCGACAGGGATCGAAATCGCGACAAATAGTTATGTGACTTTA
CAAGCAATGGCACCGACCAATATCAAAACGGTTCATCAAACCTCCCTACT
CCAAATCGTGAGCAGCGTCGATCGAATCGAATTGCTGTCGTCTACCCACC
CACGACCAGCGTTTTCAGCAACAAAGCGGACAAATTACGCTCTAACCAGT
TTCGATCAACAAGTCCAAGCTTCTCAAGGCCACACATCGTACAAAAATAA
GGAAACTTGA
back to top