mRNA_F-serratus_M_contig1411.2973.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1411.2973.1 vs. uniprot
Match: D8LE58_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE58_ECTSI) HSP 1 Score: 140 bits (352), Expect = 3.560e-32 Identity = 209/324 (64.51%), Postives = 235/324 (72.53%), Query Frame = 1
Query: 838 LPKQASGLTTGSSSSIDGVVLNLISPTEHPKRSPSGSVELERRRVRFSCSRFAMDKAAQGGHMSVLQLLHDQGHSCTTNAMNWAAAFGQLEAVKWLSENRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLHDIRAPCTSTAIHLAYLHGHMGVYNFLGDMYPDKKSAIDWNTADSIIVAEREIIEDAKKRNMELEKEARXXXXXXXXXXXXXXXXXXXXXXXXQSLPIKFGRDGKPSLSSIKTVGI 1809
L + S + S +S+D + L L SPT S+ FSCS+FAMDKAAQGGH+ VLQLLHDQGH CTTNAM+WAAAFG+ E VKWLSENR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DI A CTSTA+HLA +HGH GVY FL MYP K S D +D +VAE+E+++ K ++ +++EAR SLPI FG +GKP+LS I T G+
Sbjct: 86 LKTRGSNTSVTSINSLDSLGLGLDSPTL--------SIAHGNGHFGFSCSKFAMDKAAQGGHIDVLQLLHDQGHECTTNAMDWAAAFGKTETVKWLSENREEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDIGATCTSTAVHLAQVHGHHGVYRFLNTMYPGKASPFD-AFSDPTVVAEQEMVDQDKCLDLVVQREARRRRQSVIFADTVEASESRRRA----SLPIPFGHNGKPALSRINTFGL 396
BLAST of mRNA_F-serratus_M_contig1411.2973.1 vs. uniprot
Match: A0A6H5K2E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2E8_9PHAE) HSP 1 Score: 139 bits (351), Expect = 9.300e-31 Identity = 262/665 (39.40%), Postives = 313/665 (47.07%), Query Frame = 1
Query: 88 MVGLRFLSRLRASSKRKSAPVSKTSQAELCFSVDKIWNLILSFQDGSPSGSWLMEDGNLAADLEHLELMK-------------ARHREFRYSVDAMDGAAMAGHVEILEFLWRLGQDCTTKXXXXXXXXXXXXXXAWLHAKTTAGATKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---RGRGWXXXXXXXXXXXXXXXXXXXXXXXXXXEGGTDQALQFAVGRGHTEMVGLLSIPRRGSNAARLPKQASGLTTGSSS--SIDGVVLNLISPTEHPKRSPSGSVELERRRVRFSCSRFAMDKAAQGGHMSVLQLLHDQGHSCTTNAMNWAAAFGQLEAVKWLSENRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-------------------------------------------------------------------------LHDIRAPCTSTAIHLAYLHGHMGVYNFLGDMYPDKKSAIDWNTADSIIVAEREIIEDAKKRNMELEKEARXXXXXXXXXXXXXXXXXXXXXXXXQSLPIKFGRDGKPSLSSIKTVGI 1809
M GL+ + RLRA KR+ + F++ K+ LI S+QDG W ED NLAA+L HL+LMK +R+ + + D AA G++ +++ WLH G T S XXXXXXXXXXXXXXXXXX R G EGGT+ ALQ+A MV LL PR+ S++ + Q G T +S S+D + L L SPT S+ + RF+CS+FAMDKAAQGGH+ VLQLLHDQGH CTTNAM+WAAAFG+ E VKWLSENR XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LHD A CTSTA+HLA +HGH GVY FL MYP K S D +D +VAE+E+++ K ++ +++EAR SLPI FG +GKP+LS I T +
Sbjct: 1 MGGLKLIYRLRARLKRRPQLQLDVKATDHGFAIKKVRKLIFSYQDGGAPALWFPEDANLAAELGHLQLMKTMKGVKSGQIFLTSRNLKVSRQRNRPDYAAANGYLPVVQ---------------------------WLHDNRREGCTVSAMNWXXXXXXXXXXXXXXXXXXETYVWYDMTQVDTPYAERTLPDRLFDLLSYRHEG-CTTAAFDRAAMNNHVHVIMWLTDNRSEGGTESALQWA-------MVALLLAPRKDSDSEGVALQTRGSNTSVTSIKSLDSLGLGLDSPTL--------SIPHGKGHFRFNCSKFAMDKAAQGGHIDVLQLLHDQGHECTTNAMDWAAAFGKTETVKWLSENREEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRCDHIDDTPENSSSHPTAACEGCRPTYFIASFSSGGILDPKDNSFGSLPSVPQTDRLAVDSCYRQHPGPHRSPALEGCSREAMERAARNGHLEVVKLLHDRGATCTSTAVHLAQVHGHHGVYRFLNAMYPGKASPFD-AFSDPTVVAEQEMVDQDKSLDLVVQREARRRRQSVIFADTVEASESRRRA----SLPIPFGHNGKPALSRINTFAL 617 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1411.2973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1411.2973.1 >prot_F-serratus_M_contig1411.2973.1 ID=prot_F-serratus_M_contig1411.2973.1|Name=mRNA_F-serratus_M_contig1411.2973.1|organism=Fucus serratus male|type=polypeptide|length=575bp MVGLRFLSRLRASSKRKSAPVSKTSQAELCFSVDKIWNLILSFQDGSPSGback to top mRNA from alignment at F-serratus_M_contig1411:27028..44542+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1411.2973.1 ID=mRNA_F-serratus_M_contig1411.2973.1|Name=mRNA_F-serratus_M_contig1411.2973.1|organism=Fucus serratus male|type=mRNA|length=17515bp|location=Sequence derived from alignment at F-serratus_M_contig1411:27028..44542+ (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1411:27028..44542+ >mRNA_F-serratus_M_contig1411.2973.1 ID=mRNA_F-serratus_M_contig1411.2973.1|Name=mRNA_F-serratus_M_contig1411.2973.1|organism=Fucus serratus male|type=CDS|length=3450bp|location=Sequence derived from alignment at F-serratus_M_contig1411:27028..44542+ (Fucus serratus male)back to top |