mRNA_F-serratus_M_contig1405.2926.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1405.2926.1
Unique NamemRNA_F-serratus_M_contig1405.2926.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1405.2926.1 vs. uniprot
Match: A0A836CAF8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAF8_9STRA)

HSP 1 Score: 114 bits (284), Expect = 3.050e-28
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   16 YRSATWHAILDNFRPVSVWVADLFIFYVITDGSFGEAWTAYSWLQLFGMLVLFLGTAVYNGSLKLPFLDY 225
            Y SA WHAILDNFRPVSVW  DL IFY+ T G+FGEAWT YSWLQ  GMLVLF+GTAVYNGSL++P L Y
Sbjct:  286 YLSAIWHAILDNFRPVSVWGTDLAIFYIFTAGAFGEAWTRYSWLQAVGMLVLFVGTAVYNGSLRVPGLRY 355
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BLAST of mRNA_F-serratus_M_contig1405.2926.1 vs. uniprot
Match: A0A7R9Z4U8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9Z4U8_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 3.710e-24
Identity = 45/67 (67.16%), Postives = 55/67 (82.09%), Query Frame = 1 
Query:   22 SATWHAILDNFRPVSVWVADLFIFYVITDGSFGEAWTAYSWLQLFGMLVLFLGTAVYN----GSLKL 210
            S+ WHAILDNFRPV+VW  D+FI+YVIT G++GE WT +S+LQLFGM+VL  GTAVYN    GS+KL
Sbjct:   19 SSVWHAILDNFRPVTVWGVDMFIYYVITSGAYGEPWTKWSYLQLFGMVVLLFGTAVYNAPNAGSIKL 85
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BLAST of mRNA_F-serratus_M_contig1405.2926.1 vs. uniprot
Match: T0Q499_SAPDV (Uncharacterized protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0Q499_SAPDV)

HSP 1 Score: 102 bits (253), Expect = 8.510e-24
Identity = 44/61 (72.13%), Postives = 53/61 (86.89%), Query Frame = 1 
Query:   31 WHAILDNFRPVSVWVADLFIFYVITDGSFGEAWTAYSWLQLFGMLVLFLGTAVYNGSLKLP 213
            WHAILDNFRP++VW  DL +FYV T G+FGEAWT +SWL+L GML+L LGTAVYNGS++LP
Sbjct:  297 WHAILDNFRPITVWGTDLLLFYVFTPGTFGEAWTIWSWLELGGMLMLLLGTAVYNGSIQLP 357
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BLAST of mRNA_F-serratus_M_contig1405.2926.1 vs. uniprot
Match: K8YYA0_NANGC (Drug metabolite transporter superfamily n=2 Tax=Monodopsidaceae TaxID=425072 RepID=K8YYA0_NANGC)

HSP 1 Score: 101 bits (251), Expect = 9.670e-24
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   16 YRSATWHAILDNFRPVSVWVADLFIFYVITDGSFGEAWTAYSWLQLFGMLVLFLGTAVYNGS 201
            + S+ WHAILDNFRP+SVW  DL I+YV T G FGEAWT YSWLQ  GML+LF GTAVYNGS
Sbjct:  262 FLSSVWHAILDNFRPISVWGTDLLIYYVFTYGRFGEAWTVYSWLQFGGMLLLFFGTAVYNGS 323
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BLAST of mRNA_F-serratus_M_contig1405.2926.1 vs. uniprot
Match: A0A8K1C3U3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C3U3_PYTOL)

HSP 1 Score: 101 bits (252), Expect = 1.040e-23
Identity = 44/68 (64.71%), Postives = 55/68 (80.88%), Query Frame = 1 
Query:   22 SATWHAILDNFRPVSVWVADLFIFYVITDGSFGEAWTAYSWLQLFGMLVLFLGTAVYNGSLKLPFLDY 225
            ++ WHAILDNFRP++VW  DL +FYV T G+FGEAWT +SWLQL GM++L  GTAVYNG+LK+P   Y
Sbjct:  284 NSIWHAILDNFRPITVWGTDLLLFYVFTKGAFGEAWTIWSWLQLAGMVLLLAGTAVYNGTLKIPGFAY 351
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BLAST of mRNA_F-serratus_M_contig1405.2926.1 vs. uniprot
Match: A0A3M6V9L6_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6V9L6_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.490e-23
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 1 
Query:   22 SATWHAILDNFRPVSVWVADLFIFYVITDGSFGEAWTAYSWLQLFGMLVLFLGTAVYNGSLKLP 213
            ++ WHAILDNFRP++VW ADL +FY  T G FGE WT +SWLQL GM  L LGTAVYNG+L+LP
Sbjct:  218 NSIWHAILDNFRPITVWAADLMLFYFFTQGQFGERWTIWSWLQLAGMTTLLLGTAVYNGTLRLP 281
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BLAST of mRNA_F-serratus_M_contig1405.2926.1 vs. uniprot
Match: K3WIZ6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WIZ6_GLOUD)

HSP 1 Score: 101 bits (251), Expect = 1.510e-23
Identity = 46/68 (67.65%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   22 SATWHAILDNFRPVSVWVADLFIFYVITDGSFGEAWTAYSWLQLFGMLVLFLGTAVYNGSLKLPFLDY 225
            ++ WHAILDNFRP++VW  DL +FYV T  SFGEAWT +SWLQL GM  L LGTAVYNG+LKLP   Y
Sbjct:  290 NSIWHAILDNFRPITVWGTDLLLFYVFTHESFGEAWTIWSWLQLAGMATLLLGTAVYNGTLKLPGFAY 357
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BLAST of mRNA_F-serratus_M_contig1405.2926.1 vs. uniprot
Match: W7UAT2_9STRA (Drug metabolite transporter superfamily n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UAT2_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.080e-23
Identity = 45/62 (72.58%), Postives = 50/62 (80.65%), Query Frame = 1 
Query:   16 YRSATWHAILDNFRPVSVWVADLFIFYVITDGSFGEAWTAYSWLQLFGMLVLFLGTAVYNGS 201
            + S+ WHAILDNFRP+SVW  DL I+YV T G FGEAWT YSWLQ  GML+LF GTAVYNGS
Sbjct:  237 FLSSVWHAILDNFRPISVWGTDLLIYYVFTYGRFGEAWTVYSWLQFGGMLLLFFGTAVYNGS 298
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BLAST of mRNA_F-serratus_M_contig1405.2926.1 vs. uniprot
Match: A0A484EB13_BRELC (Uncharacterized protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484EB13_BRELC)

HSP 1 Score: 100 bits (250), Expect = 2.220e-23
Identity = 44/64 (68.75%), Postives = 53/64 (82.81%), Query Frame = 1 
Query:   22 SATWHAILDNFRPVSVWVADLFIFYVITDGSFGEAWTAYSWLQLFGMLVLFLGTAVYNGSLKLP 213
            ++ WHAILDNFRP++VW ADL +FY  T G+FGE WT +SWLQL GML L LGTAVYNG+L+LP
Sbjct:  299 NSIWHAILDNFRPITVWGADLVLFYGFTSGNFGERWTIWSWLQLVGMLTLLLGTAVYNGTLRLP 362
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BLAST of mRNA_F-serratus_M_contig1405.2926.1 vs. uniprot
Match: D0RMJ6_PHYIT (Drug/Metabolite Transporter (DMT) Superfamily n=1 Tax=Phytophthora infestans (strain T30-4) TaxID=403677 RepID=D0RMJ6_PHYIT)

HSP 1 Score: 99.4 bits (246), Expect = 3.290e-23
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 1 
Query:   22 SATWHAILDNFRPVSVWVADLFIFYVITDGSFGEAWTAYSWLQLFGMLVLFLGTAVYNGSLKLP 213
            ++ WHAILDNFRP++VW  DL +FY  T G FGE WT +SWLQL GML L  GTAVYNG+L+LP
Sbjct:  201 NSIWHAILDNFRPITVWATDLLLFYFFTQGEFGERWTIWSWLQLVGMLTLLAGTAVYNGTLRLP 264
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1405.2926.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CAF8_9STRA3.050e-2875.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9Z4U8_9STRA3.710e-2467.16Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
T0Q499_SAPDV8.510e-2472.13Uncharacterized protein n=1 Tax=Saprolegnia diclin... [more]
K8YYA0_NANGC9.670e-2472.58Drug metabolite transporter superfamily n=2 Tax=Mo... [more]
A0A8K1C3U3_PYTOL1.040e-2364.71Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6V9L6_9STRA1.490e-2367.19Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
K3WIZ6_GLOUD1.510e-2367.65Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
W7UAT2_9STRA2.080e-2372.58Drug metabolite transporter superfamily n=1 Tax=Na... [more]
A0A484EB13_BRELC2.220e-2368.75Uncharacterized protein n=1 Tax=Bremia lactucae Ta... [more]
D0RMJ6_PHYIT3.290e-2365.63Drug/Metabolite Transporter (DMT) Superfamily n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1405contigF-serratus_M_contig1405:151935..153005 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score102.4
Seed ortholog evalue9.1e-20
Seed eggNOG ortholog112098.XP_008617178.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.negative regulation of mitochondrial outer membrane permeabilization involved in apoptotic signaling pathway
EggNOG OGsCOG0697@1,KOG3912@2759
COG Functional cat.EG
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size225
Cds size225
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929387.2308383-CDS-F-serratus_M_contig1405:151934..1520991622929387.2308383-CDS-F-serratus_M_contig1405:151934..152099Fucus serratus maleCDSF-serratus_M_contig1405 151935..152099 +
1690962828.6160908-CDS-F-serratus_M_contig1405:151934..1520991690962828.6160908-CDS-F-serratus_M_contig1405:151934..152099Fucus serratus maleCDSF-serratus_M_contig1405 151935..152099 +
1622929387.2461615-CDS-F-serratus_M_contig1405:152945..1530051622929387.2461615-CDS-F-serratus_M_contig1405:152945..153005Fucus serratus maleCDSF-serratus_M_contig1405 152946..153005 +
1690962828.6345615-CDS-F-serratus_M_contig1405:152945..1530051690962828.6345615-CDS-F-serratus_M_contig1405:152945..153005Fucus serratus maleCDSF-serratus_M_contig1405 152946..153005 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1405.2926.1prot_F-serratus_M_contig1405.2926.1Fucus serratus malepolypeptideF-serratus_M_contig1405 151935..153005 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1405.2926.1

>prot_F-serratus_M_contig1405.2926.1 ID=prot_F-serratus_M_contig1405.2926.1|Name=mRNA_F-serratus_M_contig1405.2926.1|organism=Fucus serratus male|type=polypeptide|length=75bp
MVYDVYRSATWHAILDNFRPVSVWVADLFIFYVITDGSFGEAWTAYSWLQ
LFGMLVLFLGTAVYNGSLKLPFLDY
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mRNA from alignment at F-serratus_M_contig1405:151935..153005+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1405.2926.1 ID=mRNA_F-serratus_M_contig1405.2926.1|Name=mRNA_F-serratus_M_contig1405.2926.1|organism=Fucus serratus male|type=mRNA|length=1071bp|location=Sequence derived from alignment at F-serratus_M_contig1405:151935..153005+ (Fucus serratus male)
ATGGTGTACGATGTATATCGCAGCGCAACATGGCACGCAATCCTGGACAA
CTTCCGCCCGGTAAGCGTGTGGGTCGCGGATTTGTTTATATTTTACGTCA
TCACCGATGGGTCGTTCGGCGAGGCCTGGACGGCGTATTCGTGGCTACAG
CTCTTTGGCATGCTGGTGAGGGACGGAGGAGGAAGTAAGGGAGAGGCGGA
GATGTGTTCTTGAATCTCATAACGGCTTACATGGTTGACGCCAATAACGG
CAAGAATGCAGACCCCCGTGTCGATGTTTTCGTCGTTATGCTTGTAGCGG
TGTGTGCTACAATACGGGAGGTGGATTGGCAGGGGTAAAATGGAGATCAG
ATCCGAGGTCCTCTGTCGTGGTCACCAGTACTGCTAGTACTCTATATATT
GAGTACGATCAAGATGCGGCACTATTGTAACGTTCTGCATAGTCTAATCG
TGGCGGTACTATATAGTGGGTGTATGAAAATTCTTATCAACAGCTCTGCC
CGGTACAAGTGTACGATCTGTACCCACTGCATGCTTCGAGAGAGCCAGGA
TCGACTAAACCGACTCACAAAAGGCCGGGCGAACAGAGCACCGATTTTCA
CCGTCATCGGATGTTCATAACGCTCAGACTTAGTGCGTTCCTTGGTCAAA
AGGACCAGCACTACAATAGTATGTAGCGCTCTTGGGTTTGAAGGGGAAAC
GTCGTGATACAGCAGTAAATGAACATTCACTACACACAGTCTTTCGTCTG
TCGCACAGAACCCTCGACATCGTGCAACAATCGGATCACGCACGCCTGTC
TTGCCAAACCAACACCCAAACGTCCTTCAATTACTCAAATGACAGCCCAC
GTCCCATCCCCCGGCACAAAAATCCCGCGTCCGTCCAAATGTCACGCAGA
TGCAAACCCCGACCCTTTCTTAAATCAATCGTTTCGACGAACGAACTGCC
GTTCTCGTCTCCATTGCATTCCACCATATGTTGCTTTCCGTCACCACCCA
CCAACGACTAGGTGCTTTTCCTGGGCACGGCCGTCTATAACGGCTCCTTG
AAGCTACCGTTCCTCGATTAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1405:151935..153005+

>mRNA_F-serratus_M_contig1405.2926.1 ID=mRNA_F-serratus_M_contig1405.2926.1|Name=mRNA_F-serratus_M_contig1405.2926.1|organism=Fucus serratus male|type=CDS|length=450bp|location=Sequence derived from alignment at F-serratus_M_contig1405:151935..153005+ (Fucus serratus male)
ATGGTGTACGATGTATATCGCAGCGCAACATGGCACGCAATCCTGGACAA
CTTCCGCCCGGTAAGCGTGTGGGTCGCGGATTTGTTTATATTTTACGTCA
TCACCGATGGGTCGTTCGGCGAGGCCTGGACGGCGTATTCGTGGCTACAG
CTCTTTGGCATGCTGATGGTGTACGATGTATATCGCAGCGCAACATGGCA
CGCAATCCTGGACAACTTCCGCCCGGTAAGCGTGTGGGTCGCGGATTTGT
TTATATTTTACGTCATCACCGATGGGTCGTTCGGCGAGGCCTGGACGGCG
TATTCGTGGCTACAGCTCTTTGGCATGCTGGTGCTTTTCCTGGGCACGGC
CGTCTATAACGGCTCCTTGAAGCTACCGTTCCTCGATTACGTGCTTTTCC
TGGGCACGGCCGTCTATAACGGCTCCTTGAAGCTACCGTTCCTCGATTAC
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