mRNA_F-serratus_M_contig1404.2925.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1404.2925.1
Unique NamemRNA_F-serratus_M_contig1404.2925.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1404.2925.1 vs. uniprot
Match: D7FSL5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSL5_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 1.390e-30
Identity = 73/162 (45.06%), Postives = 100/162 (61.73%), Query Frame = 3 
Query:  447 YSIQRDLAIRRATRMN-INFRKTDATKLLRWTIMSEFWPFHTACLAAVIPKDEKELDQQANTTVESVFNRDGEKILRSIIMSNTSPENE--TMTNVPSYASNGARRLMGMDENYVGFFQILASDPKLVIGDFDERKLGLMRLSINLNPAMVARVTSWIRSKY 923
            YSIQR LA RRA + N   F +  A KLLRWTI+SEFWPFHTACL AV  K ++        T+ +++   G K L  ++    S + +  +MT+  +     ARRLMG +E+   F ++L   P L++ DFDE KL L+R S NLNPAMVARV +W R+++
Sbjct:    7 YSIQRALARRRADKNNGFKFTRDRARKLLRWTILSEFWPFHTACLVAVAKKSKE------TGTLANLYETKGAKFLSDMLTDKRSSDGDQASMTDANTSFRAEARRLMGFEESDEAFVRVLGFAPDLLVEDFDEDKLMLLRHSFNLNPAMVARVVAWDRARW 162
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BLAST of mRNA_F-serratus_M_contig1404.2925.1 vs. uniprot
Match: A0A6H5JLB7_9PHAE (KAP NTPase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLB7_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 2.540e-27
Identity = 75/190 (39.47%), Postives = 113/190 (59.47%), Query Frame = 3 
Query:  372 EVAELEKMFKYTATTPRKAKRVYNIYSIQRDLAIRRATRMNINFRKTDATKLLRWTIMSEFWPFHTACL--AAVIPKDEKELDQ-QANTTVESVFNRDGEKILRSIIMSNTSPENETMTNVPSYASNGARRLMGMDENYVGFFQILASDPKLVIGDFDERK--LGLMRLSINLNPAMVARVTSWIRSKYN 926
            E  E   + K   TTPRK KR+ NIY IQR LA  + +    +FR T A KLLRW  + EFWPF TACL  +A +  D +E D    +  ++ V+     K++++++      ++E  +    ++ +  RRL+GMDE+   F ++L + P L +GDF E +  LGL+R S NLNPAMVA V +W+RS+++
Sbjct:  675 ETDEFHMLCKEIVTTPRKMKRILNIYGIQRALAKEQTS----DFRSTSARKLLRWAALCEFWPFRTACLVGSAKLAIDTREEDLGDKSAPLQFVYMERTSKVMKTMLNETQKVDDEPRSG--GFSRSEVRRLLGMDESDQAFLRVLQATPLLCVGDFMEGQDCLGLLRFSFNLNPAMVATVGAWVRSEFS 858
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BLAST of mRNA_F-serratus_M_contig1404.2925.1 vs. uniprot
Match: A0A6H5KKB9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKB9_9PHAE)

HSP 1 Score: 78.2 bits (191), Expect = 5.330e-14
Identity = 47/124 (37.90%), Postives = 68/124 (54.84%), Query Frame = 3 
Query:  558 PFHTACLAAVIPKDEKELDQQANTTVESVFNRDGEKILRSIIMSNTSPENETMTNVPSYAS--NGARRLMGMDENYVGFFQILASDPKLVIGDFDERKLGLMRLSINLNPAMVARVTSWIRSKY 923
            PFHTACL AV  K ++        T+ +++   G K L  ++    S +      + +  S    ARRLMG +E+   F ++    P L++ DFDE KL L+R S NLNPAMVARV +W R ++
Sbjct:    5 PFHTACLVAVAKKSKE------TGTLANLYETKGAKFLSDMLTDKRSSDGSPAFMIDANTSFRAEARRLMGFEESDEAFVRVSGFAPDLLVEDFDEDKLMLLRHSFNLNPAMVARVVAWDRGRW 122
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BLAST of mRNA_F-serratus_M_contig1404.2925.1 vs. uniprot
Match: A0A835YZB8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZB8_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 9.380e-5
Identity = 44/177 (24.86%), Postives = 77/177 (43.50%), Query Frame = 3 
Query:  414 TPRKAKRVYNIYSIQRDLAIRRATRMNINFRKTD--------ATKLLRWTIMSEFWPFHTACLAAVIPKDEKELDQQANTTVESVFNRDGEKILRSIIMSNTSPENETMTNVPSYASNGARRLMGMDENYVGFFQILASDPKLVIGDFDERK---LGLMRLSINLNPAMVARVTSWI 911
            TPRK KR+ NIY +QR +      R     +           A  LLRWT ++E WP   ACL  ++   E  L+          +   G++     ++     E+    +  S      +RL+ +D +   F ++L    ++   +    +   L L +L+INLNPA+   +T+++
Sbjct:  105 TPRKLKRILNIYPLQRAIMKAAGERQAAAAKAKQQDPAPMAGAEMLLRWTFLAELWPVRFACLMHIMETVESPLESTRGLRHLYEYTESGQRCGLGALLDR---ESSGYDDAKSTRYKDCQRLLALDGDGPTFLKLLQDASRVARKELTVGRVCTLSLHKLTINLNPALRTEITTFM 278
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1404.2925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FSL5_ECTSI1.390e-3045.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JLB7_9PHAE2.540e-2739.47KAP NTPase domain-containing protein n=1 Tax=Ectoc... [more]
A0A6H5KKB9_9PHAE5.330e-1437.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZB8_9STRA9.380e-524.86Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1404contigF-serratus_M_contig1404:180206..182297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size1180
Cds size867
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929387.0414677-UTR-F-serratus_M_contig1404:180205..1804561622929387.0414677-UTR-F-serratus_M_contig1404:180205..180456Fucus serratus maleUTRF-serratus_M_contig1404 180206..180456 -
1690962828.5349522-UTR-F-serratus_M_contig1404:180205..1804561690962828.5349522-UTR-F-serratus_M_contig1404:180205..180456Fucus serratus maleUTRF-serratus_M_contig1404 180206..180456 -
1622929387.152873-UTR-F-serratus_M_contig1404:182235..1822971622929387.152873-UTR-F-serratus_M_contig1404:182235..182297Fucus serratus maleUTRF-serratus_M_contig1404 182236..182297 -
1690962828.601951-UTR-F-serratus_M_contig1404:182235..1822971690962828.601951-UTR-F-serratus_M_contig1404:182235..182297Fucus serratus maleUTRF-serratus_M_contig1404 182236..182297 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929387.0646017-CDS-F-serratus_M_contig1404:180456..1808291622929387.0646017-CDS-F-serratus_M_contig1404:180456..180829Fucus serratus maleCDSF-serratus_M_contig1404 180457..180829 -
1690962828.5478425-CDS-F-serratus_M_contig1404:180456..1808291690962828.5478425-CDS-F-serratus_M_contig1404:180456..180829Fucus serratus maleCDSF-serratus_M_contig1404 180457..180829 -
1622929387.0814826-CDS-F-serratus_M_contig1404:181097..1812081622929387.0814826-CDS-F-serratus_M_contig1404:181097..181208Fucus serratus maleCDSF-serratus_M_contig1404 181098..181208 -
1690962828.5584805-CDS-F-serratus_M_contig1404:181097..1812081690962828.5584805-CDS-F-serratus_M_contig1404:181097..181208Fucus serratus maleCDSF-serratus_M_contig1404 181098..181208 -
1622929387.0978642-CDS-F-serratus_M_contig1404:181533..1817921622929387.0978642-CDS-F-serratus_M_contig1404:181533..181792Fucus serratus maleCDSF-serratus_M_contig1404 181534..181792 -
1690962828.5690343-CDS-F-serratus_M_contig1404:181533..1817921690962828.5690343-CDS-F-serratus_M_contig1404:181533..181792Fucus serratus maleCDSF-serratus_M_contig1404 181534..181792 -
1622929387.1117017-CDS-F-serratus_M_contig1404:181973..1820631622929387.1117017-CDS-F-serratus_M_contig1404:181973..182063Fucus serratus maleCDSF-serratus_M_contig1404 181974..182063 -
1690962828.578812-CDS-F-serratus_M_contig1404:181973..1820631690962828.578812-CDS-F-serratus_M_contig1404:181973..182063Fucus serratus maleCDSF-serratus_M_contig1404 181974..182063 -
1622929387.13376-CDS-F-serratus_M_contig1404:182201..1822351622929387.13376-CDS-F-serratus_M_contig1404:182201..182235Fucus serratus maleCDSF-serratus_M_contig1404 182202..182235 -
1690962828.5884783-CDS-F-serratus_M_contig1404:182201..1822351690962828.5884783-CDS-F-serratus_M_contig1404:182201..182235Fucus serratus maleCDSF-serratus_M_contig1404 182202..182235 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1404.2925.1prot_F-serratus_M_contig1404.2925.1Fucus serratus malepolypeptideF-serratus_M_contig1404 180457..182235 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1404.2925.1

>prot_F-serratus_M_contig1404.2925.1 ID=prot_F-serratus_M_contig1404.2925.1|Name=mRNA_F-serratus_M_contig1404.2925.1|organism=Fucus serratus male|type=polypeptide|length=289bp
MSAESQVPTMQDGMEEALSGDESPHVDGGPVSSAYEESERQDITADDEEK
PMDEPFPLYRGRRVVAPVSEEEPSESMSPVMTSGQMVAIRMGRQTSYKAQ
TSDEVAELEKMFKYTATTPRKAKRVYNIYSIQRDLAIRRATRMNINFRKT
DATKLLRWTIMSEFWPFHTACLAAVIPKDEKELDQQANTTVESVFNRDGE
KILRSIIMSNTSPENETMTNVPSYASNGARRLMGMDENYVGFFQILASDP
KLVIGDFDERKLGLMRLSINLNPAMVARVTSWIRSKYN*
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mRNA from alignment at F-serratus_M_contig1404:180206..182297-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1404.2925.1 ID=mRNA_F-serratus_M_contig1404.2925.1|Name=mRNA_F-serratus_M_contig1404.2925.1|organism=Fucus serratus male|type=mRNA|length=2092bp|location=Sequence derived from alignment at F-serratus_M_contig1404:180206..182297- (Fucus serratus male)
GTGGGACAGCGAACGAGCGGGCGTCTCTATTGCACAGCTGGCTTCGAAGT
CAAGAGTCGGATATGAGTGCGGAATCTCAAGTACCAACAATGCAAGGTGC
TCTGGTTGTTGGACGTAAGTTAAACAAGGAAATAGGTCCGTACATTCGAG
AACTATTAGATGTCCTTGATAATTGCCCACCCCAAAGATCTTGGTCACAC
GCATGTATCCGTCTTGTGACATCTTATTTTACAGACGGGATGGAAGAAGC
ATTATCGGGGGATGAGTCCCCTCATGTTGATGGAGGACCCGTATCATCTG
CATACGAAGAGAGTGAACGTCAGGGTAAGGCCAGAAGAGTGTCTCCACAA
AATAGCCGGTAGTCGAGTATGAACAGTAACTTATTCGTCACTGGTTCCTA
CAAGTCACATTAAGGAGTTAGGTGACAGTCAGTAGACAGCACACACTTTG
CTACATCAATACTCTGACCTCAACTCGATCTTTGTTTTGTCCGTCGCCAT
TCTAGATATCACAGCCGATGACGAGGAGAAACCGATGGATGAACCCTTTC
CTTTATATCGGGGTCGTCGCGTGGTTGCACCTGTGAGCGAGGAAGAGCCT
TCAGAGAGTATGTCGCCGGTAATGACCTCCGGACAAATGGTGGCGATTCG
AATGGGCCGTCAGACATCATACAAGGCACAAACCTCGGATGAGGTTGCGG
AACTCGAGAAGATGTTCAAGTATACTGCAACTACCCCACGCAAGGCTAAG
CGCGTCTACAACATGTCAGTCATTAGGCCTGGGATACGTGTAGCTGCCAA
GCGTGCGCCACCTGGGAAATGATCTAATGGTCTAAGCGGAAACGGGAGGG
GGGGCAGTCTTTCATGTTCATGCATTACTGATCAGTCCAACCTCGTAACC
CTCTCTCAGATGTGGGGGCAAGATGGTTGGTTCATGTATTCGTATATCCG
GCTAACAGTAAGGACAAGAAGGAAAAAGTCACTTTTAAGTTACATGTTAA
TAGCCCACCTTCATTTAGCATTGCGCTCAGTTCGTGGTTCTGTGCAGTCA
AAATCCCAAACATCATTGTCGTCGATCGGCCTGGTGCAGATACAGCATCC
AGCGCGATCTAGCTATAAGAAGAGCAACAAGAATGAACATCAACTTCCGC
AAAACCGACGCAACGAAGCTTCTCCGTTGGACCATAATGTCCGAATTTTG
GTGAGATTATCGGCAGGTAATGTTAACGCTGAGGTTTTTAATTGAGTTGC
GATTATAGGTAAATTATTTCGCCTCGAACTTATATTTTTAGTTTCGGCTT
ATTCTAGAACGGTGTGCAAAGAGCAGAGGAGATCACTTATTAGTATAGGA
GTGGATGGGGGCAACATAACATGCTGATCTGTGTCGGTTTGGTTCACTAC
ACGATGATATAGGTTTATGAGTAACATAGCACGTCCTTGGTCGTTCACCC
ATCTCGTCGTGTTTCCAGGCCATTCCACACTGCATGCCTAGCAGCTGTTA
TCCCAAAAGACGAGAAAGAACTGGACCAGCAAGCAAACACGACGGTTGAA
TCTGTGTTCAACCGGGATGGAGAAAAAATCCTTCGAAGTATAATAATGAG
CAATACGTCCCCGGAGAATGAGACAATGACAAATGTTCCCAGCTATGCTT
CGAACGGCGCGCGAAGGTTGATGGGTATGGACGAAAACTACGTGGGCTTC
TTTCAGATCTTGGCTTCTGATCCGAAACTTGTCATCGGGGACTTTGATGA
GAGAAAACTTGGCTTGATGCGTCTCTCTATCAATCTCAACCCGGCTATGG
TGGCGAGGGTGACATCGTGGATCCGCTCGAAATACAACTGACTTGCTATG
GACAAAATACCACTTTCCACGCGGCGACTTATTGACCGACGGGTTCGAGA
TCAGATATATCCATAGGGAACGCTCAGGGGATTCAAGCGTCGGGAAAATT
AATGTTTCCAGTTACACCTTATGACGCCCACTAGCGACTTTGGTAGGATA
GTATGGCCCGGGGCAAGGCTAGAGATGCGACGCTGATAAGTGTTAACACT
TCTTGTCGTTTAACCCAAACGACGCGGGCCGTGCCAAGAGCG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1404:180206..182297-

>mRNA_F-serratus_M_contig1404.2925.1 ID=mRNA_F-serratus_M_contig1404.2925.1|Name=mRNA_F-serratus_M_contig1404.2925.1|organism=Fucus serratus male|type=CDS|length=1734bp|location=Sequence derived from alignment at F-serratus_M_contig1404:180206..182297- (Fucus serratus male)
ATGAGTGCGGAATCTCAAGTACCAACAATGCAAGATGAGTGCGGAATCTC
AAGTACCAACAATGCAAGACGGGATGGAAGAAGCATTATCGGGGGATGAG
TCCCCTCATGTTGATGGAGGACCCGTATCATCTGCATACGAAGAGAGTGA
ACGTCAGGACGGGATGGAAGAAGCATTATCGGGGGATGAGTCCCCTCATG
TTGATGGAGGACCCGTATCATCTGCATACGAAGAGAGTGAACGTCAGGAT
ATCACAGCCGATGACGAGGAGAAACCGATGGATGAACCCTTTCCTTTATA
TCGGGGTCGTCGCGTGGTTGCACCTGTGAGCGAGGAAGAGCCTTCAGAGA
GTATGTCGCCGGTAATGACCTCCGGACAAATGGTGGCGATTCGAATGGGC
CGTCAGACATCATACAAGGCACAAACCTCGGATGAGGTTGCGGAACTCGA
GAAGATGTTCAAGTATACTGCAACTACCCCACGCAAGGCTAAGCGCGTCT
ACAACATATATCACAGCCGATGACGAGGAGAAACCGATGGATGAACCCTT
TCCTTTATATCGGGGTCGTCGCGTGGTTGCACCTGTGAGCGAGGAAGAGC
CTTCAGAGAGTATGTCGCCGGTAATGACCTCCGGACAAATGGTGGCGATT
CGAATGGGCCGTCAGACATCATACAAGGCACAAACCTCGGATGAGGTTGC
GGAACTCGAGAAGATGTTCAAGTATACTGCAACTACCCCACGCAAGGCTA
AGCGCGTCTACAACATATACAGCATCCAGCGCGATCTAGCTATAAGAAGA
GCAACAAGAATGAACATCAACTTCCGCAAAACCGACGCAACGAAGCTTCT
CCGTTGGACCATAATGTCCGAATTTTGATACAGCATCCAGCGCGATCTAG
CTATAAGAAGAGCAACAAGAATGAACATCAACTTCCGCAAAACCGACGCA
ACGAAGCTTCTCCGTTGGACCATAATGTCCGAATTTTGGCCATTCCACAC
TGCATGCCTAGCAGCTGTTATCCCAAAAGACGAGAAAGAACTGGACCAGC
AAGCAAACACGACGGTTGAATCTGTGTTCAACCGGGATGGAGAAAAAATC
CTTCGAAGTATAATAATGAGCAATACGTCCCCGGAGAATGAGACAATGAC
AAATGTTCCCAGCTATGCTTCGAACGGCGCGCGAAGGTTGATGGGTATGG
ACGAAAACTACGTGGGCTTCTTTCAGATCTTGGCTTCTGATCCGAAACTT
GTCATCGGGGACTTTGATGAGAGAAAACTTGGCTTGATGCGTCTCTCTAT
CAATCTCAACCCGGCTATGGTGGCGAGGGTGACATCGTGGATCCGCTCGA
AATACAACTGAGCCATTCCACACTGCATGCCTAGCAGCTGTTATCCCAAA
AGACGAGAAAGAACTGGACCAGCAAGCAAACACGACGGTTGAATCTGTGT
TCAACCGGGATGGAGAAAAAATCCTTCGAAGTATAATAATGAGCAATACG
TCCCCGGAGAATGAGACAATGACAAATGTTCCCAGCTATGCTTCGAACGG
CGCGCGAAGGTTGATGGGTATGGACGAAAACTACGTGGGCTTCTTTCAGA
TCTTGGCTTCTGATCCGAAACTTGTCATCGGGGACTTTGATGAGAGAAAA
CTTGGCTTGATGCGTCTCTCTATCAATCTCAACCCGGCTATGGTGGCGAG
GGTGACATCGTGGATCCGCTCGAAATACAACTGA
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