mRNA_F-serratus_M_contig1403.2923.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1403.2923.1
Unique NamemRNA_F-serratus_M_contig1403.2923.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1403.2923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1403contigF-serratus_M_contig1403:221243..221840 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size598
Cds size348
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1403.2923.1prot_F-serratus_M_contig1403.2923.1Fucus serratus malepolypeptideF-serratus_M_contig1403 221411..221758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929386.9287019-UTR-F-serratus_M_contig1403:221242..2214101622929386.9287019-UTR-F-serratus_M_contig1403:221242..221410Fucus serratus maleUTRF-serratus_M_contig1403 221243..221410 +
1690962828.4777853-UTR-F-serratus_M_contig1403:221242..2214101690962828.4777853-UTR-F-serratus_M_contig1403:221242..221410Fucus serratus maleUTRF-serratus_M_contig1403 221243..221410 +
1622929386.9547133-UTR-F-serratus_M_contig1403:221758..2218401622929386.9547133-UTR-F-serratus_M_contig1403:221758..221840Fucus serratus maleUTRF-serratus_M_contig1403 221759..221840 +
1690962828.503783-UTR-F-serratus_M_contig1403:221758..2218401690962828.503783-UTR-F-serratus_M_contig1403:221758..221840Fucus serratus maleUTRF-serratus_M_contig1403 221759..221840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929386.9432309-CDS-F-serratus_M_contig1403:221410..2217581622929386.9432309-CDS-F-serratus_M_contig1403:221410..221758Fucus serratus maleCDSF-serratus_M_contig1403 221411..221758 +
1690962828.487904-CDS-F-serratus_M_contig1403:221410..2217581690962828.487904-CDS-F-serratus_M_contig1403:221410..221758Fucus serratus maleCDSF-serratus_M_contig1403 221411..221758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1403.2923.1

>prot_F-serratus_M_contig1403.2923.1 ID=prot_F-serratus_M_contig1403.2923.1|Name=mRNA_F-serratus_M_contig1403.2923.1|organism=Fucus serratus male|type=polypeptide|length=116bp
MSSRINLSILLRPRSRSDRKIASLNSSTSSFKKVVYSSGVKGRPSRSNTS
ARSEPVILRQAATSTFVKTNTISFKRSALAASMASICVSLRSLSSSKSKR
MASNASSEYFFFFKA*
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mRNA from alignment at F-serratus_M_contig1403:221243..221840+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1403.2923.1 ID=mRNA_F-serratus_M_contig1403.2923.1|Name=mRNA_F-serratus_M_contig1403.2923.1|organism=Fucus serratus male|type=mRNA|length=598bp|location=Sequence derived from alignment at F-serratus_M_contig1403:221243..221840+ (Fucus serratus male)
GGTGAAACGATAGCATGCGAATCTGACGGCGAATTTGGACAGTACTGTGC
GTGTACGGTACTGGGAGTAGTCTGTGGCGTCCTGTGGGCTCGCTCCTCTA
GCTCCTTCGCGTACTGTTGGATCGCGTCGTGTTCGTCGTCCGTGACCTGC
ATTATTACTCGTCCCCGTATGAGCTCTCGCATAAATCTGTCTATCCTCTT
GAGGCCCCGTTCTCGTTCAGATAGAAAGATAGCATCTCTCAACTCGTCCA
CCTCATCCTTCAAAAAAGTAGTGTATTCCTCAGGCGTGAAGGGTCGGCCG
TCCCGTTCCAACACTTCGGCGCGATCGGAACCAGTCATCCTTCGCCAAGC
AGCCACCTCTACTTTCGTCAAAACAAATACCATCTCCTTCAAGCGAAGTG
CGTTAGCGGCCTCAATGGCGTCCATTTGCGTCTCCCTACGCTCTCTGTCC
TCATCCAAATCAAAAAGGATGGCCTCCAATGCATCTTCCGAATACTTCTT
CTTTTTCAAGGCGTGATAGAGTGCACTGCTTGCTTCATCTTGAGTGCACC
CTATCTTCATTGCGTAGTCAAAGAATGGCAATTTCCCCATGACTCACA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1403:221243..221840+

>mRNA_F-serratus_M_contig1403.2923.1 ID=mRNA_F-serratus_M_contig1403.2923.1|Name=mRNA_F-serratus_M_contig1403.2923.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig1403:221243..221840+ (Fucus serratus male)
ATGAGCTCTCGCATAAATCTGTCTATCCTCTTGAGGCCCCGTTCTCGTTC
AGATAGAAAGATAGCATCTCTCAACTCGTCCACCTCATCCTTCAAAAAAG
TAGTGTATTCCTCAGGCGTGAAGGGTCGGCCGTCCCGTTCCAACACTTCG
GCGCGATCGGAACCAGTCATCCTTCGCCAAGCAGCCACCTCTACTTTCGT
CAAAACAAATACCATCTCCTTCAAGCGAAGTGCGTTAGCGGCCTCAATGG
CGTCCATTTGCGTCTCCCTACGCTCTCTGTCCTCATCCAAATCAAAAAGG
ATGGCCTCCAATGCATCTTCCGAATACTTCTTCTTTTTCAAGGCGTGAAT
GAGCTCTCGCATAAATCTGTCTATCCTCTTGAGGCCCCGTTCTCGTTCAG
ATAGAAAGATAGCATCTCTCAACTCGTCCACCTCATCCTTCAAAAAAGTA
GTGTATTCCTCAGGCGTGAAGGGTCGGCCGTCCCGTTCCAACACTTCGGC
GCGATCGGAACCAGTCATCCTTCGCCAAGCAGCCACCTCTACTTTCGTCA
AAACAAATACCATCTCCTTCAAGCGAAGTGCGTTAGCGGCCTCAATGGCG
TCCATTTGCGTCTCCCTACGCTCTCTGTCCTCATCCAAATCAAAAAGGAT
GGCCTCCAATGCATCTTCCGAATACTTCTTCTTTTTCAAGGCGTGA
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