mRNA_F-serratus_M_contig1400.2914.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1400.2914.1
Unique NamemRNA_F-serratus_M_contig1400.2914.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1400.2914.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1400contigF-serratus_M_contig1400:34980..35433 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size254
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.8250291-CDS-F-serratus_M_contig1400:34981..350271622929385.8250291-CDS-F-serratus_M_contig1400:34981..35027Fucus serratus maleCDSF-serratus_M_contig1400 34982..35027 -
1690962827.9706655-CDS-F-serratus_M_contig1400:34981..350271690962827.9706655-CDS-F-serratus_M_contig1400:34981..35027Fucus serratus maleCDSF-serratus_M_contig1400 34982..35027 -
1622929385.8416588-CDS-F-serratus_M_contig1400:35227..354331622929385.8416588-CDS-F-serratus_M_contig1400:35227..35433Fucus serratus maleCDSF-serratus_M_contig1400 35228..35433 -
1690962827.980385-CDS-F-serratus_M_contig1400:35227..354331690962827.980385-CDS-F-serratus_M_contig1400:35227..35433Fucus serratus maleCDSF-serratus_M_contig1400 35228..35433 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1400.2914.1prot_F-serratus_M_contig1400.2914.1Fucus serratus malepolypeptideF-serratus_M_contig1400 34982..35433 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1400.2914.1

>prot_F-serratus_M_contig1400.2914.1 ID=prot_F-serratus_M_contig1400.2914.1|Name=mRNA_F-serratus_M_contig1400.2914.1|organism=Fucus serratus male|type=polypeptide|length=84bp
FLLCSKIFVPVLLAAMSLLRVESVNRRSDDGGEKHCWKAVKREIAVLFGD
TSKKCAQRATACERGFASQVWQISYQFMFGAGRA
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mRNA from alignment at F-serratus_M_contig1400:34980..35433-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1400.2914.1 ID=mRNA_F-serratus_M_contig1400.2914.1|Name=mRNA_F-serratus_M_contig1400.2914.1|organism=Fucus serratus male|type=mRNA|length=454bp|location=Sequence derived from alignment at F-serratus_M_contig1400:34980..35433- (Fucus serratus male)
TTCTTGCTCTGTTCCAAGATTTTTGTCCCAGTGCTTCTCGCAGCCATGTC
CCTGCTGCGAGTAGAGAGCGTGAACAGACGTTCTGACGATGGTGGCGAGA
AACACTGCTGGAAAGCTGTGAAGAGGGAGATTGCCGTCTTATTCGGTGAT
ACGAGCAAGAAATGCGCGCAAAGGGCTACGGCGTGCGAGAGAGGATTCGC
TTCCCAGTGAGTTTGTTTTTGGAGCCAGGATGAACACTGGTGGGTAGTAT
ACTGCTCATCCCACTTCGTATCATATCTTCCATGATACACTACCACCCCT
GCCCCTCAAAATTTAGATTGCAACGGTTCTCTGTCGTTAGGTAGTCAAAG
AAACAGCTGATAGCGCTTCGTGTTTACCGTACATACACCCTCTCGCCGTT
GTGCAGGGTGTGGCAAATCTCTTACCAGTTCATGTTCGGCGCGGGGCGGG
CGGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1400:34980..35433-

>mRNA_F-serratus_M_contig1400.2914.1 ID=mRNA_F-serratus_M_contig1400.2914.1|Name=mRNA_F-serratus_M_contig1400.2914.1|organism=Fucus serratus male|type=CDS|length=504bp|location=Sequence derived from alignment at F-serratus_M_contig1400:34980..35433- (Fucus serratus male)
TTCTTGCTCTGTTCCAAGATTTTTGTCCCAGTGCTTCTCGCAGCCATGTC
CCTGCTGCGAGTAGAGAGCGTGAACAGACGTTCTGACGATGGTGGCGAGA
AACACTGCTGGAAAGCTGTGAAGAGGGAGATTGCCGTCTTATTCGGTGAT
ACGAGCAAGAAATGCGCGCAAAGGGCTACGGCGTGCGAGAGAGGATTCGC
TTCCCATTCTTGCTCTGTTCCAAGATTTTTGTCCCAGTGCTTCTCGCAGC
CATGTCCCTGCTGCGAGTAGAGAGCGTGAACAGACGTTCTGACGATGGTG
GCGAGAAACACTGCTGGAAAGCTGTGAAGAGGGAGATTGCCGTCTTATTC
GGTGATACGAGCAAGAAATGCGCGCAAAGGGCTACGGCGTGCGAGAGAGG
ATTCGCTTCCCAGGTGTGGCAAATCTCTTACCAGTTCATGTTCGGCGCGG
GGCGGGCGGGTGTGGCAAATCTCTTACCAGTTCATGTTCGGCGCGGGGCG
GGCG
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