mRNA_F-serratus_M_contig1400.2913.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1400.2913.1
Unique NamemRNA_F-serratus_M_contig1400.2913.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1400.2913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1400contigF-serratus_M_contig1400:34462..34973 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size264
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1400.2913.1prot_F-serratus_M_contig1400.2913.1Fucus serratus malepolypeptideF-serratus_M_contig1400 34473..34918 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.7410665-UTR-F-serratus_M_contig1400:34461..344721622929385.7410665-UTR-F-serratus_M_contig1400:34461..34472Fucus serratus maleUTRF-serratus_M_contig1400 34462..34472 -
1690962827.9319217-UTR-F-serratus_M_contig1400:34461..344721690962827.9319217-UTR-F-serratus_M_contig1400:34461..34472Fucus serratus maleUTRF-serratus_M_contig1400 34462..34472 -
1622929385.779251-UTR-F-serratus_M_contig1400:34918..349731622929385.779251-UTR-F-serratus_M_contig1400:34918..34973Fucus serratus maleUTRF-serratus_M_contig1400 34919..34973 -
1690962827.9614809-UTR-F-serratus_M_contig1400:34918..349731690962827.9614809-UTR-F-serratus_M_contig1400:34918..34973Fucus serratus maleUTRF-serratus_M_contig1400 34919..34973 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929385.7569928-CDS-F-serratus_M_contig1400:34472..347051622929385.7569928-CDS-F-serratus_M_contig1400:34472..34705Fucus serratus maleCDSF-serratus_M_contig1400 34473..34705 -
1690962827.942081-CDS-F-serratus_M_contig1400:34472..347051690962827.942081-CDS-F-serratus_M_contig1400:34472..34705Fucus serratus maleCDSF-serratus_M_contig1400 34473..34705 -
1622929385.7673738-CDS-F-serratus_M_contig1400:34887..349181622929385.7673738-CDS-F-serratus_M_contig1400:34887..34918Fucus serratus maleCDSF-serratus_M_contig1400 34888..34918 -
1690962827.9512115-CDS-F-serratus_M_contig1400:34887..349181690962827.9512115-CDS-F-serratus_M_contig1400:34887..34918Fucus serratus maleCDSF-serratus_M_contig1400 34888..34918 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1400.2913.1

>prot_F-serratus_M_contig1400.2913.1 ID=prot_F-serratus_M_contig1400.2913.1|Name=mRNA_F-serratus_M_contig1400.2913.1|organism=Fucus serratus male|type=polypeptide|length=88bp
MPYLFLDDDKEEQGASGGEQDDDDGASYRGIAAGDESGELVSERRKKLML
LLVVVSYCRNRLRQTKQLLLHYTRHVDAWEMLWWGIL*
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mRNA from alignment at F-serratus_M_contig1400:34462..34973-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1400.2913.1 ID=mRNA_F-serratus_M_contig1400.2913.1|Name=mRNA_F-serratus_M_contig1400.2913.1|organism=Fucus serratus male|type=mRNA|length=512bp|location=Sequence derived from alignment at F-serratus_M_contig1400:34462..34973- (Fucus serratus male)
CCTCCTTGCAAAAAAGCCATGCGACATCACCAAGGAAGACGCTATCCGCG
CTTTCATGCCATACCTTTTCCTTGATGACGACAAAGGTGGGGTGCGCGAC
TTGTTGGATATCTCTGGGCGTATAAGGTTGAGAACAACTTCTGACGTTGA
CATCCTGCTGCCCGTTGTTTATTTTAAATCTCCAGCATACTCAATTCTGT
TTTGGATCTCCGCTTTACTAAAGCGTCTTTCGTGGCTGTTTTTCCCTCAC
AACGTCGTCACTCTACAGAAGAACAAGGGGCCTCAGGCGGCGAGCAAGAC
GATGATGATGGTGCGAGTTATCGCGGTATTGCAGCTGGGGACGAGAGTGG
AGAGCTCGTCTCTGAACGAAGGAAAAAGCTGATGCTGTTGCTGGTCGTCG
TCTCGTATTGTAGAAACCGTTTACGGCAGACAAAACAGTTGTTGTTGCAT
TACACGCGTCATGTTGATGCTTGGGAAATGCTGTGGTGGGGGATTTTATG
AGGCATTATGCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1400:34462..34973-

>mRNA_F-serratus_M_contig1400.2913.1 ID=mRNA_F-serratus_M_contig1400.2913.1|Name=mRNA_F-serratus_M_contig1400.2913.1|organism=Fucus serratus male|type=CDS|length=528bp|location=Sequence derived from alignment at F-serratus_M_contig1400:34462..34973- (Fucus serratus male)
ATGCCATACCTTTTCCTTGATGACGACAAAGATGCCATACCTTTTCCTTG
ATGACGACAAAGAAGAACAAGGGGCCTCAGGCGGCGAGCAAGACGATGAT
GATGGTGCGAGTTATCGCGGTATTGCAGCTGGGGACGAGAGTGGAGAGCT
CGTCTCTGAACGAAGGAAAAAGCTGATGCTGTTGCTGGTCGTCGTCTCGT
ATTGTAGAAACCGTTTACGGCAGACAAAACAGTTGTTGTTGCATTACACG
CGTCATGTTGATGCTTGGGAAATGCTGTGGTGGGGGATTTTATGAAAGAA
CAAGGGGCCTCAGGCGGCGAGCAAGACGATGATGATGGTGCGAGTTATCG
CGGTATTGCAGCTGGGGACGAGAGTGGAGAGCTCGTCTCTGAACGAAGGA
AAAAGCTGATGCTGTTGCTGGTCGTCGTCTCGTATTGTAGAAACCGTTTA
CGGCAGACAAAACAGTTGTTGTTGCATTACACGCGTCATGTTGATGCTTG
GGAAATGCTGTGGTGGGGGATTTTATGA
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