mRNA_F-serratus_M_contig14.2903.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig14.2903.1
Unique NamemRNA_F-serratus_M_contig14.2903.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2903.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:1353399..1354165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size767
Cds size594
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2903.1prot_F-serratus_M_contig14.2903.1Fucus serratus malepolypeptideF-serratus_M_contig14 1353430..1354023 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929379.0980997-UTR-F-serratus_M_contig14:1353398..13534291622929379.0980997-UTR-F-serratus_M_contig14:1353398..1353429Fucus serratus maleUTRF-serratus_M_contig14 1353399..1353429 +
1690962824.8614566-UTR-F-serratus_M_contig14:1353398..13534291690962824.8614566-UTR-F-serratus_M_contig14:1353398..1353429Fucus serratus maleUTRF-serratus_M_contig14 1353399..1353429 +
1622929379.289095-UTR-F-serratus_M_contig14:1354023..13541651622929379.289095-UTR-F-serratus_M_contig14:1354023..1354165Fucus serratus maleUTRF-serratus_M_contig14 1354024..1354165 +
1690962824.8790905-UTR-F-serratus_M_contig14:1354023..13541651690962824.8790905-UTR-F-serratus_M_contig14:1354023..1354165Fucus serratus maleUTRF-serratus_M_contig14 1354024..1354165 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929379.1082313-CDS-F-serratus_M_contig14:1353429..13540231622929379.1082313-CDS-F-serratus_M_contig14:1353429..1354023Fucus serratus maleCDSF-serratus_M_contig14 1353430..1354023 +
1690962824.8716376-CDS-F-serratus_M_contig14:1353429..13540231690962824.8716376-CDS-F-serratus_M_contig14:1353429..1354023Fucus serratus maleCDSF-serratus_M_contig14 1353430..1354023 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig14.2903.1

>prot_F-serratus_M_contig14.2903.1 ID=prot_F-serratus_M_contig14.2903.1|Name=mRNA_F-serratus_M_contig14.2903.1|organism=Fucus serratus male|type=polypeptide|length=198bp
MKRSKNILTVSKNANRTTTTLLGRGQKRGTVTVPNTQYSSTSIAWRGVRR
SQKVTARLYPVLLQVILHGRLCAERIYLHSPDWILSRKMPRRRKERLVST
LRTEADKCLALARLLFQLANPNCASTGRKRLFPPPKKTGQAIRALAIPAC
LWRGFTFWGLVRHVFSISGPFPTATKKAAWPRSIDSSIFSKSMSWDE*
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mRNA from alignment at F-serratus_M_contig14:1353399..1354165+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig14.2903.1 ID=mRNA_F-serratus_M_contig14.2903.1|Name=mRNA_F-serratus_M_contig14.2903.1|organism=Fucus serratus male|type=mRNA|length=767bp|location=Sequence derived from alignment at F-serratus_M_contig14:1353399..1354165+ (Fucus serratus male)
GAGGGTTTCTGTTTTTTTTTTCTCATGACAAATGAAACGTTCAAAAAACA
TTCTCACGGTTTCAAAAAACGCCAACCGAACCACGACAACTCTCTTGGGA
AGAGGACAGAAACGTGGCACCGTTACAGTTCCAAATACACAGTACAGTAG
TACGAGTATCGCCTGGCGCGGCGTGCGGAGGTCACAGAAGGTAACGGCTC
GGCTTTATCCCGTTCTACTGCAGGTGATTCTGCACGGACGGCTCTGCGCC
GAGCGTATATACCTCCACTCACCGGATTGGATACTCTCACGAAAAATGCC
AAGGCGAAGAAAGGAACGGCTTGTTAGCACCTTGCGAACCGAAGCTGACA
AGTGTCTTGCCCTGGCGCGACTTCTGTTTCAACTGGCCAACCCCAATTGC
GCCTCTACCGGGAGAAAACGTTTGTTTCCCCCCCCGAAAAAGACCGGGCA
GGCTATCCGGGCGCTGGCTATTCCCGCCTGTTTGTGGAGAGGTTTTACTT
TTTGGGGGCTGGTACGCCACGTGTTCTCTATATCTGGGCCGTTCCCGACA
GCTACAAAAAAAGCGGCTTGGCCTCGCTCTATTGATTCAAGTATTTTTAG
CAAGTCGATGTCCTGGGACGAATGATTGCCGCACACATCCCCCAACTATG
GTATTAATAGCACCGGTGGTGCTCTTACTCATCGCGGTGGACATGCATCC
GACGCAACAAAATTCTTAAGTCCCAACCACTTCTTTCTAAAAGTACTTGT
GCTGCAGCTTTTGCATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig14:1353399..1354165+

>mRNA_F-serratus_M_contig14.2903.1 ID=mRNA_F-serratus_M_contig14.2903.1|Name=mRNA_F-serratus_M_contig14.2903.1|organism=Fucus serratus male|type=CDS|length=1188bp|location=Sequence derived from alignment at F-serratus_M_contig14:1353399..1354165+ (Fucus serratus male)
ATGAAACGTTCAAAAAACATTCTCACGGTTTCAAAAAACGCCAACCGAAC
CACGACAACTCTCTTGGGAAGAGGACAGAAACGTGGCACCGTTACAGTTC
CAAATACACAGTACAGTAGTACGAGTATCGCCTGGCGCGGCGTGCGGAGG
TCACAGAAGGTAACGGCTCGGCTTTATCCCGTTCTACTGCAGGTGATTCT
GCACGGACGGCTCTGCGCCGAGCGTATATACCTCCACTCACCGGATTGGA
TACTCTCACGAAAAATGCCAAGGCGAAGAAAGGAACGGCTTGTTAGCACC
TTGCGAACCGAAGCTGACAAGTGTCTTGCCCTGGCGCGACTTCTGTTTCA
ACTGGCCAACCCCAATTGCGCCTCTACCGGGAGAAAACGTTTGTTTCCCC
CCCCGAAAAAGACCGGGCAGGCTATCCGGGCGCTGGCTATTCCCGCCTGT
TTGTGGAGAGGTTTTACTTTTTGGGGGCTGGTACGCCACGTGTTCTCTAT
ATCTGGGCCGTTCCCGACAGCTACAAAAAAAGCGGCTTGGCCTCGCTCTA
TTGATTCAAGTATTTTTAGCAAGTCGATGTCCTGGGACGAATGAATGAAA
CGTTCAAAAAACATTCTCACGGTTTCAAAAAACGCCAACCGAACCACGAC
AACTCTCTTGGGAAGAGGACAGAAACGTGGCACCGTTACAGTTCCAAATA
CACAGTACAGTAGTACGAGTATCGCCTGGCGCGGCGTGCGGAGGTCACAG
AAGGTAACGGCTCGGCTTTATCCCGTTCTACTGCAGGTGATTCTGCACGG
ACGGCTCTGCGCCGAGCGTATATACCTCCACTCACCGGATTGGATACTCT
CACGAAAAATGCCAAGGCGAAGAAAGGAACGGCTTGTTAGCACCTTGCGA
ACCGAAGCTGACAAGTGTCTTGCCCTGGCGCGACTTCTGTTTCAACTGGC
CAACCCCAATTGCGCCTCTACCGGGAGAAAACGTTTGTTTCCCCCCCCGA
AAAAGACCGGGCAGGCTATCCGGGCGCTGGCTATTCCCGCCTGTTTGTGG
AGAGGTTTTACTTTTTGGGGGCTGGTACGCCACGTGTTCTCTATATCTGG
GCCGTTCCCGACAGCTACAAAAAAAGCGGCTTGGCCTCGCTCTATTGATT
CAAGTATTTTTAGCAAGTCGATGTCCTGGGACGAATGA
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