mRNA_F-serratus_M_contig14.2893.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig14.2893.1
Unique NamemRNA_F-serratus_M_contig14.2893.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig14.2893.1 vs. uniprot
Match: D8LCF0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCF0_ECTSI)

HSP 1 Score: 408 bits (1048), Expect = 1.420e-142
Identity = 209/247 (84.62%), Postives = 231/247 (93.52%), Query Frame = 1 
Query:    1 MTAKTKGETKPIVPESVLKKRRTKEAIAAKQAAQKDSNAKDAKAKNEEIFKRAERYVKEYRDQENDAIRFRREAKASGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGTKINGLVKRML 741
            M A    E+KPI+PESVLKKRRTKEAIAAKQAA+++++ K A AK  EIF+RAERYVKEYR QEND+IRFRREAKA+GNI+VPAE+ VV+V+RIRGIIGVSPKVRKILQLLRLRQINN+VFVKLNAAT+KMLRLVEPY+AYGYPNLKTVRELIYKRGFGKV+KQRIPISDNSV+EG+LGK GIICVEDLIHEIYTVGP+FK ANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRG KIN L+KRML
Sbjct:    1 MPAAVSKESKPIIPESVLKKRRTKEAIAAKQAAKQEADQKAAAAKKTEIFERAERYVKEYRAQENDSIRFRREAKAAGNIHVPAEAGVVIVVRIRGIIGVSPKVRKILQLLRLRQINNSVFVKLNAATVKMLRLVEPYVAYGYPNLKTVRELIYKRGFGKVNKQRIPISDNSVIEGTLGKAGIICVEDLIHEIYTVGPNFKAANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGAKINALIKRML 247
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BLAST of mRNA_F-serratus_M_contig14.2893.1 vs. uniprot
Match: A0A836CG85_9STRA (Ribosomal protein L30, ferredoxin-like fold domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG85_9STRA)

HSP 1 Score: 343 bits (880), Expect = 4.090e-117
Identity = 173/237 (73.00%), Postives = 201/237 (84.81%), Query Frame = 1 
Query:   31 PIVPESVLKKRRTKEAIAAKQAAQKDSNAKDAKAKNEEIFKRAERYVKEYRDQENDAIRFRREAKASGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGTKINGLVKRML 741
            P VPESVLKKRR +E I+A++     +  KD  AK +E+F RA++Y +EY D +  AI  RR AK  GN YVPAE+K+ +VIRIRGIIGV PKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKT+++L+YKRGFGKV K RIPISDNSV+EG LGK+GI+ V+DLIHEIYTVGPHFKEANNFLWPFKLSNP GGF QKLLHFNEGG+AGQRG +IN +++ M+
Sbjct:    3 PFVPESVLKKRRAQEEISARKVKAASAAKKDRAAKRKELFVRAQKYEQEYNDADKAAIDLRRAAKKEGNFYVPAEAKLAVVIRIRGIIGVGPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTIKQLVYKRGFGKVRKSRIPISDNSVIEGVLGKYGIVGVDDLIHEIYTVGPHFKEANNFLWPFKLSNPTGGFTQKLLHFNEGGEAGQRGEEINKMIRLMV 239
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BLAST of mRNA_F-serratus_M_contig14.2893.1 vs. uniprot
Match: A0A7S3V109_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3V109_9STRA)

HSP 1 Score: 329 bits (844), Expect = 1.230e-111
Identity = 166/236 (70.34%), Postives = 197/236 (83.47%), Query Frame = 1 
Query:   34 IVPESVLKKRRTKEAIAAKQAAQKDSNAKDAKAKNEEIFKRAERYVKEYRDQENDAIRFRREAKASGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGTKINGLVKRML 741
            ++PESVLKKR T   + AK+   K   A + K K  + FKRAE+YVKEY+  END +R +R AK+ GN+YV  ESK+++  RIRGIIG+SPKVRKILQLLRLRQI+NTVF+K N ATI MLRLVEP++AYGYP+LKTVREL+YKRGFGKV+KQRIPI+DNSV+E  LGK  IICVEDLIHEIYTVGP+FK A NFLWPFKLS+PNGGF++KLLHFNEGGDAG RG KIN L+KRM+
Sbjct:    4 VIPESVLKKRATLAELKAKREEHKAKVAAERKVKRSKAFKRAEQYVKEYKAAENDLVRLKRVAKSEGNLYVEPESKLIVATRIRGIIGISPKVRKILQLLRLRQIHNTVFLKANKATINMLRLVEPFVAYGYPSLKTVRELVYKRGFGKVNKQRIPIADNSVIEEVLGKKDIICVEDLIHEIYTVGPNFKAAANFLWPFKLSSPNGGFKRKLLHFNEGGDAGNRGAKINALIKRMI 239
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BLAST of mRNA_F-serratus_M_contig14.2893.1 vs. uniprot
Match: A0A7S2WW50_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WW50_9STRA)

HSP 1 Score: 327 bits (838), Expect = 1.810e-110
Identity = 170/236 (72.03%), Postives = 194/236 (82.20%), Query Frame = 1 
Query:   34 IVPESVLKKRRTKEAIAAKQAAQKDSNAKDAKAKNEEIFKRAERYVKEYRDQENDAIRFRREAKASGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGTKINGLVKRML 741
             VPESVLKKR T    AA +A  K +    A    E++ KRAE YV EY+  ENDAIR RREAK +G+ YVP E K+  V+RIRGIIGVSPKVRKILQLLRLRQI+N VFVKLN+ATIKMLRLVEPYIAYGYPNLK+ REL+ KRGFGKV+KQRI ISDNSV+E  LGK+ IICVEDLIHEIYTVGPHFKEA+NFLWP KLS+P GGF +KL+HFNEGG+AG RG KINGL+K+M+
Sbjct:   21 FVPESVLKKRDTANKNAAAKAEAKAAAELKAAENKEQMLKRAETYVNEYKQMENDAIRLRREAKVAGSYYVPEEPKLAFVVRIRGIIGVSPKVRKILQLLRLRQIHNGVFVKLNSATIKMLRLVEPYIAYGYPNLKSTRELVLKRGFGKVNKQRIAISDNSVIEQVLGKYDIICVEDLIHEIYTVGPHFKEASNFLWPMKLSSPKGGFSRKLIHFNEGGEAGLRGDKINGLIKQMI 256
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BLAST of mRNA_F-serratus_M_contig14.2893.1 vs. uniprot
Match: A0A7S4E8W3_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E8W3_9STRA)

HSP 1 Score: 325 bits (832), Expect = 7.930e-110
Identity = 165/237 (69.62%), Postives = 196/237 (82.70%), Query Frame = 1 
Query:   31 PIVPESVLKKRRTKEAIAAKQAAQKDSNAKDAKAKNEEIFKRAERYVKEYRDQENDAIRFRREAKASGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGTKINGLVKRML 741
            P VPESVLKKRR + AIAA + A         KAK + IFKRAE+Y  EY+ QENDAIR RREAK + +IYVP E+K+  VIRIRGIIG+SPKV+KILQLLRLRQ+++ VFVKLN +TIKMLRLVEPYIAYG PNLKTVREL+YKRG+GKV+KQR+PI +N+VVE  LGK+ I+CVED+IHE+YT GPHFKE  NFLWP KLS+P GGF+ KLLH+NEGGDAG RG KI+ LVK+M+
Sbjct:    2 PFVPESVLKKRRAQAAIAADKDAASXXXXXXXKAKKDVIFKRAEKYAAEYKQQENDAIRLRREAKKANSIYVPPEAKLAFVIRIRGIIGMSPKVKKILQLLRLRQLHSGVFVKLNGSTIKMLRLVEPYIAYGTPNLKTVRELVYKRGYGKVNKQRVPIDNNAVVEQVLGKYDIVCVEDVIHELYTTGPHFKEVANFLWPCKLSSPTGGFKMKLLHYNEGGDAGDRGEKIHELVKKMI 238
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BLAST of mRNA_F-serratus_M_contig14.2893.1 vs. uniprot
Match: A0A4D9CRP3_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRP3_9STRA)

HSP 1 Score: 321 bits (823), Expect = 1.790e-108
Identity = 161/235 (68.51%), Postives = 196/235 (83.40%), Query Frame = 1 
Query:   37 VPESVLKKRRTKEAIAAKQAAQKDSNAKDAKAKNEEIFKRAERYVKEYRDQENDAIRFRREAKASGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGTKINGLVKRML 741
            +PES+LKKRRT+EA+ A + A+K +  K A+AK  E  KRAE+Y+ EY+  END IR RREAKASG  YVPAE+KV  V+RIRGI GVSPKV+KILQLLRLRQI+N VF+KLN +T+ +LR VEPYIAYGYPNLK+VRELIYKRG+ KV+KQR+P++DN++VE  LGK+G+ICVEDLIHEIYTVGPHFK+A NFLWPFKLS+P GG++ K  HF EGGDAG RG KIN  +K +L
Sbjct:    3 IPESILKKRRTQEALLATKLAEKAAAKKAARAKRGETVKRAEKYMNEYKKLENDQIRLRREAKASGAFYVPAEAKVAFVMRIRGINGVSPKVKKILQLLRLRQIHNGVFIKLNGSTVNLLRWVEPYIAYGYPNLKSVRELIYKRGYAKVNKQRLPLTDNTLVEQELGKYGLICVEDLIHEIYTVGPHFKQAANFLWPFKLSSPKGGYKDKKTHFIEGGDAGARGDKINAFIKAVL 237
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BLAST of mRNA_F-serratus_M_contig14.2893.1 vs. uniprot
Match: A0A2D4BFA6_PYTIN (Uncharacterized protein n=3 Tax=Pythium TaxID=4797 RepID=A0A2D4BFA6_PYTIN)

HSP 1 Score: 317 bits (811), Expect = 1.330e-106
Identity = 161/236 (68.22%), Postives = 190/236 (80.51%), Query Frame = 1 
Query:   34 IVPESVLKKRRTKEAIAAKQAAQKDSNAKDAKAKNEEIFKRAERYVKEYRDQENDAIRFRREAKASGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGTKINGLVKRML 741
            +VPESVLKKRRT E + AK+A +        K   +  FK AE+YVKEYR  E   +  RR+AK++GN YVPAE+K+  VIRIRGIIGVSPKVRKILQL RLRQI N VFVKLN ATI MLRLVEP++ YGYPNLKT RELIYKRGFGKV  QRI ++DNS++E SLG  GIIC+EDLIHEI+TVGPHFKEA+NFLWPF+LS+PNGG++QKLLHF EGGDAG RG +IN  +K++L
Sbjct:    5 LVPESVLKKRRTVEEVKAKRAVKAQKEKAHRKQVRQIAFKSAEKYVKEYRQIEKQNVLLRRQAKSTGNFYVPAEAKLAFVIRIRGIIGVSPKVRKILQLFRLRQIQNGVFVKLNKATINMLRLVEPFVTYGYPNLKTTRELIYKRGFGKVRGQRIALTDNSIIEKSLGHHGIICIEDLIHEIFTVGPHFKEASNFLWPFQLSSPNGGYKQKLLHFCEGGDAGNRGEEINKFIKKVL 240
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BLAST of mRNA_F-serratus_M_contig14.2893.1 vs. uniprot
Match: UPI001F045B80 (60S ribosomal protein L7-like n=1 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F045B80)

HSP 1 Score: 314 bits (805), Expect = 1.200e-105
Identity = 161/236 (68.22%), Postives = 193/236 (81.78%), Query Frame = 1 
Query:   31 PIVPESVLKKRRTKEAIAAKQAAQKDSNAKDAKAKNEEIFKRAERYVKEYRDQENDAIRFRREAKASGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGTKINGLVKRM 738
            P VPE+VLKKR+  E I A +A    +  K+ K K + IFKRAE+YVKEYR +E+D IR +R AK  GN YVP+E+K+  VIRIRGI GVSP+VRKILQL RL QINN VFVKLN AT+ ML +++PY+A+GYPNLK+VRELIYKRGF K++KQRIPI+DNS++E SLGKFGIICVEDLIHEI+T+GPHFKEANNFLWPFKLSNP GG R+K  HF EGGD G R  KINGL+++M
Sbjct:    7 PTVPETVLKKRKRLEEIKAARAKALLTQKKENKDKRKVIFKRAEQYVKEYRLKEHDEIRMKRMAKQFGNFYVPSEAKLAFVIRIRGINGVSPRVRKILQLFRLLQINNGVFVKLNKATLNMLNIIQPYVAFGYPNLKSVRELIYKRGFVKINKQRIPITDNSLIEESLGKFGIICVEDLIHEIFTIGPHFKEANNFLWPFKLSNPTGGLRKKRNHFVEGGDFGNREDKINGLIRKM 242
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BLAST of mRNA_F-serratus_M_contig14.2893.1 vs. uniprot
Match: F0XYU4_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYU4_AURAN)

HSP 1 Score: 314 bits (804), Expect = 1.440e-105
Identity = 164/236 (69.49%), Postives = 191/236 (80.93%), Query Frame = 1 
Query:   34 IVPESVLKKRRTKEAIAAKQAAQKDSNAKDAKAKNEEIFKRAERYVKEYRDQENDAIRFRREAKASGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGTKINGLVKRML 741
             VPESVLKKRRT+ AIA +Q             K E  FKRAE+Y+ EY+  ENDAIR RREAKA+ +IYVP E K+  VIRIRGIIG+SPKV+KILQLLRLRQ+++ VFVKL  AT KMLRLVEPYIAYG PNLK+VRE IYKRG+GKV+K+R+PI +N+VVE  LGK+ IICVEDLIHEIYTVGPHF+EA NFLWP KLS+P GGF+ KLLH+NEGGDAG RG KI+ LVK+ML
Sbjct:    3 FVPESVLKKRRTQAAIATEQEXXXXXXXXXXXXKKEVTFKRAEKYMAEYKAAENDAIRLRREAKAANSIYVPPEGKLAFVIRIRGIIGMSPKVKKILQLLRLRQLHSGVFVKLTGATTKMLRLVEPYIAYGEPNLKSVRECIYKRGYGKVNKKRVPIDNNAVVEDVLGKYDIICVEDLIHEIYTVGPHFREAANFLWPVKLSSPTGGFKAKLLHYNEGGDAGYRGEKIHELVKKML 238
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BLAST of mRNA_F-serratus_M_contig14.2893.1 vs. uniprot
Match: A0A6G0WJZ8_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJZ8_9STRA)

HSP 1 Score: 315 bits (807), Expect = 2.340e-105
Identity = 159/236 (67.37%), Postives = 191/236 (80.93%), Query Frame = 1 
Query:   34 IVPESVLKKRRTKEAIAAKQAAQKDSNAKDAKAKNEEIFKRAERYVKEYRDQENDAIRFRREAKASGNIYVPAESKVVLVIRIRGIIGVSPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVRELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHFKEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGTKINGLVKRML 741
            +VPES+LKKRRT EA+ AK+     +  K A    +  FK AE+YVKEYR  E   +  RR+AKA+GN YVPAE+KV  V+RIRGIIGVSPKVRKIL+L RL QI N VFVKLN ATI MLRLVEP++AYGYPNLK+VRELIYKRGFGK++KQRI ++DNS++E  LGKFGIIC+EDLIHE+YT GPHFKEA NF+WPF+LS+PNGG+ QKLLHF EGGD G RG +IN  +K++L
Sbjct:   48 LVPESILKKRRTLEAVKAKKVEAVAATKKHAHKVRQIAFKSAEKYVKEYRQIEKQNVLLRRQAKAAGNFYVPAEAKVAFVVRIRGIIGVSPKVRKILKLFRLTQIQNGVFVKLNKATINMLRLVEPFVAYGYPNLKSVRELIYKRGFGKINKQRIALTDNSLIEKVLGKFGIICIEDLIHEVYTCGPHFKEAANFIWPFQLSSPNGGYTQKLLHFAEGGDHGNRGEEINKFIKQIL 283
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCF0_ECTSI1.420e-14284.62Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CG85_9STRA4.090e-11773.00Ribosomal protein L30, ferredoxin-like fold domain... [more]
A0A7S3V109_9STRA1.230e-11170.34Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A7S2WW50_9STRA1.810e-11072.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S4E8W3_9STRA7.930e-11069.62Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A4D9CRP3_9STRA1.790e-10868.51Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A2D4BFA6_PYTIN1.330e-10668.22Uncharacterized protein n=3 Tax=Pythium TaxID=4797... [more]
UPI001F045B801.200e-10568.2260S ribosomal protein L7-like n=1 Tax=Xenia sp. Ca... [more]
F0XYU4_AURAN1.440e-10569.49Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A6G0WJZ8_9STRA2.340e-10567.37Uncharacterized protein n=2 Tax=Aphanomyces euteic... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:649503..655931 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score409.8
Seed ortholog evalue8.8e-112
Seed eggNOG ortholog2880.D8LCF0
Preferred nameRPL7
KEGG koko:K02937,ko:K08819,ko:K19933
KEGG Pathwayko03010,map03010
KEGG ModuleM00177
Hectar predicted targeting categoryother localisation
GOsGO:0000172,GO:0000184,GO:0000447,GO:0000460,GO:0000462,GO:0000463,GO:0000466,GO:0000469,GO:0000470,GO:0000478,GO:0000479,GO:0000956,GO:0001889,GO:0002165,GO:0002181,GO:0003674,GO:0003676,GO:0003677,GO:0003723,GO:0003729,GO:0003735,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0005844,GO:0005886,GO:0006139,GO:0006364,GO:0006396,GO:0006399,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0007275,GO:0008033,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009507,GO:0009536,GO:0009791,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010605,GO:0010629,GO:0015031,GO:0015833,GO:0015934,GO:0016020,GO:0016070,GO:0016071,GO:0016072,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0022613,GO:0022625,GO:0022626,GO:0030016,GO:0030017,GO:0030312,GO:0030490,GO:0030684,GO:0030687,GO:0031090,GO:0031099,GO:0031100,GO:0031672,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034613,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0035073,GO:0035210,GO:0042254,GO:0042273,GO:0042274,GO:0042788,GO:0042802,GO:0042803,GO:0042886,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043292,GO:0043603,GO:0043604,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044449,GO:0044464,GO:0045047,GO:0045184,GO:0046483,GO:0046700,GO:0046907,GO:0046983,GO:0048513,GO:0048519,GO:0048731,GO:0048732,GO:0048856,GO:0050789,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0060255,GO:0061008,GO:0065007,GO:0070013,GO:0070727,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0097421,GO:0098588,GO:0098805,GO:0099080,GO:0099081,GO:0099512,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1902494,GO:1905267,GO:1990904
EggNOG free text desc.maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsCOG1841@1,KOG3184@2759
Ec32 ortholog descriptionRibosomal protein L30, ferredoxin-like fold domain
Ec32 orthologEc-26_004750.1
EC2.7.11.22,2.7.11.23
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko01000,ko01001,ko03011,ko04131
Exons2
Model size744
Cds size744
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929382.7352738-CDS-F-serratus_M_contig14:649502..6501261622929382.7352738-CDS-F-serratus_M_contig14:649502..650126Fucus serratus maleCDSF-serratus_M_contig14 649503..650126 -
1690962826.3617642-CDS-F-serratus_M_contig14:649502..6501261690962826.3617642-CDS-F-serratus_M_contig14:649502..650126Fucus serratus maleCDSF-serratus_M_contig14 649503..650126 -
1622929382.7496762-CDS-F-serratus_M_contig14:655811..6559311622929382.7496762-CDS-F-serratus_M_contig14:655811..655931Fucus serratus maleCDSF-serratus_M_contig14 655812..655931 -
1690962826.372134-CDS-F-serratus_M_contig14:655811..6559311690962826.372134-CDS-F-serratus_M_contig14:655811..655931Fucus serratus maleCDSF-serratus_M_contig14 655812..655931 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2893.1prot_F-serratus_M_contig14.2893.1Fucus serratus malepolypeptideF-serratus_M_contig14 649503..655931 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig14.2893.1

>prot_F-serratus_M_contig14.2893.1 ID=prot_F-serratus_M_contig14.2893.1|Name=mRNA_F-serratus_M_contig14.2893.1|organism=Fucus serratus male|type=polypeptide|length=248bp
MTAKTKGETKPIVPESVLKKRRTKEAIAAKQAAQKDSNAKDAKAKNEEIF
KRAERYVKEYRDQENDAIRFRREAKASGNIYVPAESKVVLVIRIRGIIGV
SPKVRKILQLLRLRQINNTVFVKLNAATIKMLRLVEPYIAYGYPNLKTVR
ELIYKRGFGKVSKQRIPISDNSVVEGSLGKFGIICVEDLIHEIYTVGPHF
KEANNFLWPFKLSNPNGGFRQKLLHFNEGGDAGQRGTKINGLVKRML*
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mRNA from alignment at F-serratus_M_contig14:649503..655931-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig14.2893.1 ID=mRNA_F-serratus_M_contig14.2893.1|Name=mRNA_F-serratus_M_contig14.2893.1|organism=Fucus serratus male|type=mRNA|length=6429bp|location=Sequence derived from alignment at F-serratus_M_contig14:649503..655931- (Fucus serratus male)
ATGACCGCGAAGACGAAAGGAGAGACCAAGCCCATCGTCCCAGAGTCGGT
GCTCAAGAAGCGCCGCACGAAGGAGGCTATCGCCGCTAAACAGGCCGCGC
AAAAGGACTCTAATGCCAAGGTATGACCATGCTCCATCTGTAGCCACAGA
AATGCCTAGCTCGCCATGGCCCAGGTCGTGAATCTCCGGGCATACGCGGT
CGACCATCGAGGAGACGCTTCCAACTGTGGAGGATGGCCCATCTTCTCCC
TCGGTCGTCGCTGCAGATCTTCCTTCCCTCATATCCCCTTGCCCGCGTGG
ACTGGTTTAAATTCCCTCCGTGGTCTAACCAGCACGCGGGCTCCGTCGAG
CCAGGATTTTGTACTGCAGTTCCATATCGAGAGGTCCCCGCTGTAGCCGA
TCCGTTGCTTCCCAATAACTTTGTCACGGGTTCAAATTCCTTATTTGAGG
TCTAACCCGGGCATCGTAGGGGCACCTGAGCTCCCTTGATTATGGTGGGG
CCCAGTGATGACCATGTTTCGCCGCCATCTTGGCGCCGATGGCCTGAAAC
GTTCCATGCCCACCCCCGGGCCCTCCATCGCTGTGAGTTAACTAACCACT
TCTACTTTGTACTGTGTGTACATACTAGTCTAATACACAAACGAATATAT
GTTCTCTGTTTATACCATGCTTCCATGATTTGTACTCCGTACGAAGCTCA
ATTGCTACATGTACTGCTGTTGTTATGGTACTTTCCTCGGGGTACTTGAG
ACCTACTTATGATGTATCTGAGACGGTTGCTATTTCTCGTGGGTAGTCGC
CGTAGTGTATAATAGAGTGCACGCACAACTTTAACAAGCGCTACTGTTTG
TGAAGTATCGATCGTATAGTAATATATTTTTCAATATCACCTTTATATCT
ATAACTTGTAGACTTCTCTCATTGACACCCATCCGATCTTAGACCCTACT
GGTATGTAACAAATTGAGCTGTATCCTAGCTTATCGTGATTTTTGTTATT
GTTTTTAAAGAAAATCTGAACGCATCTAAACCATCTGATCAGTCAAAAGG
TTTAGGTGGGAACATTGGCTGTAGGGACAAAAACATCTACGTGGTATTAA
AAGGGTTCCCCAATGTAGTGACATAGGGTCAACAGACACAGTATGATATC
GGGGAGAATAAGCCCACCGTTATACTGTACACTGACATCAATCGCCACGT
AGGGACACCAAGACAAAACCAAGAGCAACATCAGACTAGGTATAGTATAG
AGTATTTGATTTGAAGAAAGGTGAAGAGGACGACCGGCAGATATATATGT
CTTCAACATGATCCAGTAAAAGACCAAAACTCGTTAACCTGAAAATAGAC
GAAGCAATGGAGGGCCGGCCGTAGGTCGCTAAAGGAAATTAGGAGCAGGT
CGACCGAGAACCTTTCTTGTACTATCTGTCAGGTCTACTACAAACGCGAG
AGCTCCTCAAACTCTACAGGTCCACGTAAGATCTAACACGATTCAGGAAC
TTCGGCTGCAAAAACATTGTATTTGCAGCCTTTGATCCCACCTACCAGTA
AACGTTTTGACATTTTTTCTGCTGACTGGAGGATGCTCAGAAGATATATA
GGCGCGTTCTGGTTTTTTTTAAAAATGTTGGTGTGTCTGCATATGGTGAT
TACTTTGAATGGAAAGTAATGTCATGAAGATGTTTATTTTCACTGTTTAT
TTTAGACTATGAAGCAACAACGTAATACACGTATTATATTAATAGTATAA
TGTCCCTGCGTACTTGTTAAAATGTAAATGTATTTCTTATACCAATTACA
ATATTGTCACATTGCTTTTGTTCTAGACTTCAGGCCCTTACTGATGTACT
AAAAATGTTTTTGTTTTTGTCTGGTGTCCCTTCATGGCGATTAATGTAAG
TGTACTGGTACAGCATAACGTTGGGTTTCTCGCCGGTATTAGACATGTTG
ACCCAACGTTACTACCATCGGGGAAGAACCCGTTTCAATGCCATGGAGAG
GTTTTTTATTTGCAGCCTATGATCCCACCTAAACGTTTTGACATTTTTCC
CCCTGGCTGGGAGATCAATGATAAATGATGCTATTAACAGTATAGTCTAG
ATGCGTTCAGATTTTTCTTTAAACTCCTTGACTGCTTTCGTCGTTAACAT
ACATTACGACAAAACCACGAGCATTTTATTTGGTGGTCCTCTAAAAAAAT
CTTGGTACAAATTGTAGGGAACAGGGGAAATATGGGCAAAAAAGAGAGGA
GCACAACGTTGCAGTACAAGATTGATAACCTGCACGTTTAGGCTTTTTTT
TTGGGTAGGGTGTGTTTCCGATTTGGTTCGGTACCTTCCATCTTGTGACC
ACGGCTGGATTCGTAGCGGATCAGCTGATTTGAGATAAACAGCATTTGGT
GCTCACCTATTGCCTACCAGTACTAATAATACTGTACTCTTACCAAGATT
CTTGTTGGTGTACTTTACTGCTCTACAGCAGTACTCTAAAGCAACAGGAT
TCGATTCGTACAAACCTCTTTTTGGTTCCATCTGTGACTTTCTCGTCGTA
CAGCACGTGGACGCATCGGCTCGATGTGTTTTGTGTGTGTGTTTTCTTCC
CATTTATTCTGGACATTAAAAGTTCGTTGGACGTACCAACCGGGGTCATA
CAGCACGTGTACGCATCGACTCGATGTACCCGTCTTAGTCTAATGGATGT
ACGATCTTTGCTCATTGCAATTATCGAAGTGAAAAACGTCGTGCAGCACT
TGTATTTGTTGTCCAATACATATTCCAAGTACATGTAATACTAAAAATAT
GCACCATGATTTTTTCAGTAGGGTACGAAGTAGATTTTCTTATATGAGTC
GCTGTGAGGGGGTTCGGATCTGTTCCGCCAGTCTTTTTTTTTATTTTACG
TGTTTTTTTCTCCCTTTTTTCTGTCCTTTTTTTTATTTTTTATTTTTATG
TTGTGTTGGTGGCTCACAACCACGCGTCACAGCAACACGCCCCCGAGGGT
AGGCCGGCAGTCATGGAAGCAGGCGCCAATGTTGGAGGTGTCAATAATGA
CGTGGGTGAAGAAGGATCACCGGTTGTCACCGATCCTTCCGCGGAGAGTG
GTGTTGCTGCAGCCGCAGCTAGTGGTAAGGATGACAGTCCCGTGCTAGGA
GGGGTGGTTGGTGATGGCACAGCTCCAACACAGACAGTTCACTGACAGAA
TGGCACGCCGTTCACGGCCAGGGTTTTCCCGGCGAAAGCCGGCCAGCAAG
CGAAAAGGTCGTGGATTTGGCAAGTGCATGCCCCACTTGCCGAATCCACG
ACCTTTTCGCTTGCTGGCCAGCTTTTGCAAGGACAACCGTGACCATGAAC
GGCGTGCCATTCTGTGAGTGAACTGTCTGTTGGAGCTGTGCCATCACCAA
CCACCCCTCCTAGCACGGGACTGTCATCCTCACCACTAGCTGCGGCTGCA
GCAGCACCACTCTCCGCGGAAGGATCGGTGACAACCGGTGATCCTTCTTC
ACCCACGTCATTATTGGCGCCTCCTTCCATGACTGCCGGCCTACCCTCGG
GGGCGTGGTGTGTTGCTGTGACGCACCAAAATTCTTGTTAGTGTACTTTA
CTGCTCTACAGCAGTACTCAGGATTCGATTCGTACATACCTTGGTACCTC
TTTTTGGTTCCATCTGTGACTTTCTCGTCGTACAGCACGTGGACGCATCG
ACTCGATGTGTTTTGTGTGTGTCTTTTCTTCCCATTTATTCTGGACATTA
AAAGTTCGTTGGACGTACCAACCGGGGTCATACAGCACGTGTACGCATCG
ACTCGATGTCGATGCACCCGTCTTCCCACTCACACCGTATACTGGAATAG
CGAAAATAACATTGAAATTTCCTGGTTCCGTCAATTATTCGAAGGCTACG
TAAAACGTCGTTGTTAGCAATTATTGAAGTGAAAAACGTCCAATACATAT
TCCTTGATAGTTCCAAGGCATAAGATAATACTAAAATCTGCACCATAATT
TATTCAGTAGGGTACGAAGTAGATTTTCTTATATGAGGGACTGTGAAGGG
GTTCAAATCTGTTCCGCCAGTCTTTTTTTTTATTCTACTAGTTTTTTTAT
TCCTTTTTTGTCCTTTTTTTTATTTTTTATTTTTGTGTTGGTGGCTCACA
ACGACGCGTCACAGCAACACGCTCCCGAGGGTAGGCCGGCAGTCATGGAA
GGAGGCGCCAATGTTGGAGGTGTCAATAATGACGGGGGTGAAGAAAGGTC
ACCGGTTGTCACCGATCCTTCCGCGGAGAGTGGTGTTGCTGCAGCCGCAG
CTAGTGGTGAGGATGACAGTCCCGTGCTAGGAGGGGTGGTTGGTGATGGC
ACAGCTCCAACACAGACAGTTCACTGACAGAATGGCACGCCTTTCACGGC
CAGGGTTTTCCCGGCGAAAGCCGGCCAGCAAGCGAAAAGGTCGTGGATTT
GGCACGTGCATGGCCCACTTGCCACATCCACGACCTTTTCGCTTGCTGGC
CAGCTTTTACAGGGACAACCGTGACCATGAACGGCGTGCCATTCTGTCAG
TGAACTGTCTGTTGGAGCTGTGCCATCACCAACCACCCCTCCTAGCACGG
GACTGTCATCCTCACCACTAGCTGCGGCTGCAGCAGCACCACTCTCCGCG
GAAGGATCGGTGACAACCGGTGATCCTTCTTCACCCACGCCATTATTGAC
ACCTCCAACATTGGCGCCTGCTTTCTTCCCATTTATTCTGGACATTAAAA
GTTCGTTGGACGTACCAACCGGGGTCATACAGCACGTGTACGCATCGACT
CGATGTCGATGCACCCGTCTTCCCACTCACACCGTGTAGCAGTACTACAA
TAGCGAAAATAACATTGAAATTTCCTGGTTCCGTCAGCTCTTCGAAGGCT
ACGTAGTACACACTATTTGTTATTGCAATTATTGAAGTGAAAAACGCCGT
GCAGCACTTGATCACTTGATAGTTCCAAGGCCAAGTACAGATAATACTAA
GAATCTGCACCATAATTTATTCAGTAGGGTACGAGGTAGATTTTCTTCTA
TGAGGGACTGTGAGGGGGTTCAAATCTGATGCGCCAGTCTTTTTTTTTAT
TCTACTAGTTTTTTTATTCCTTTTTTTCTGTCCTTTTTTTTTATTTTTTA
TTTTTGTGTTGGTGGCTCACAACGACGCGTCACAGCAACACACCACAAAT
AACATGCCCGAGGGTAGGCCGGCAGTCATGGAAGGAGGCGCCAATTTTGG
AGGTGTCAACAATGACATGGGTGAAGGAGGATCACCGGTTGTCGCCCATG
CCTCCGCGTAGAGTGATGCTGCTGCAGCTGGTGGTGGTGGTGAGGATGAC
ACTCCCGTGCTAGGAGGAGTGGTTGGTGATGGCACAGCTCCAACACAGAC
AGTTCACTCACAGAATGGCACGCCGTTCACGGTCACGGTTGTTCGGGCGA
AAGCTGGCCAGCTTTCGTCGGGACAACCGTGAACGGCGTGCTTTAAACTG
GTACAAACAGCAGTCGGTACCAGACTTGCCTCTACATTTCCATCCTCTCA
TTTGATTGGTTGTCGCAGCGAGGTCAAGAGTGAGGCTTCGTTGGGCAAAA
CCGTTTTTCCTCTAGCAGGTTCGGCAACAAAACCCTTGCGATTTCCTTTT
CAAAGCCTCCCGAGCGTCGCATGCCCTGATAATTTGCAATCCTTGACGAC
GTTGTCCATAACTAACTTTCTCTTGATCGTGGTGGGTATCTTTTCGCTGT
CGTCCTCTTCTGTACTCCTTGATGCTGTACTCCGATCTCTGTAAAACAAA
AACAGGACGCTAAAGCCAAGAATGAGGAGATCTTCAAGCGCGCCGAGCGT
TACGTGAAGGAATACCGTGACCAGGAGAACGATGCGATCCGCTTCCGCCG
CGAGGCGAAGGCATCCGGAAACATTTACGTGCCCGCCGAGTCCAAGGTGG
TTCTCGTCATCCGCATCCGAGGTATCATCGGGGTCTCGCCTAAGGTTCGC
AAGATCCTGCAGCTGTTGCGCCTTCGCCAGATCAACAACACGGTCTTCGT
GAAGCTGAACGCGGCAACCATCAAGATGCTCCGCCTCGTGGAGCCGTACA
TCGCTTACGGCTACCCTAACCTCAAGACCGTGCGCGAGCTTATCTACAAG
CGCGGCTTCGGCAAGGTCAGCAAGCAGCGTATCCCAATCTCGGATAACTC
GGTCGTAGAGGGCTCTCTCGGCAAGTTCGGTATCATCTGCGTGGAGGACC
TGATCCACGAGATCTACACGGTGGGACCGCACTTCAAGGAGGCCAACAAC
TTCCTGTGGCCCTTCAAGCTCTCCAACCCCAATGGAGGGTTCCGCCAGAA
GCTGCTCCACTTCAACGAGGGTGGTGACGCCGGCCAGCGCGGGACGAAGA
TCAACGGCCTCGTCAAGCGCATGCTCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig14:649503..655931-

>mRNA_F-serratus_M_contig14.2893.1 ID=mRNA_F-serratus_M_contig14.2893.1|Name=mRNA_F-serratus_M_contig14.2893.1|organism=Fucus serratus male|type=CDS|length=1488bp|location=Sequence derived from alignment at F-serratus_M_contig14:649503..655931- (Fucus serratus male)
ATGACCGCGAAGACGAAAGGAGAGACCAAGCCCATCGTCCCAGAGTCGGT
GCTCAAGAAGCGCCGCACGAAGGAGGCTATCGCCGCTAAACAGGCCGCGC
AAAAGGACTCTAATGCCAAGATGACCGCGAAGACGAAAGGAGAGACCAAG
CCCATCGTCCCAGAGTCGGTGCTCAAGAAGCGCCGCACGAAGGAGGCTAT
CGCCGCTAAACAGGCCGCGCAAAAGGACTCTAATGCCAAGGACGCTAAAG
CCAAGAATGAGGAGATCTTCAAGCGCGCCGAGCGTTACGTGAAGGAATAC
CGTGACCAGGAGAACGATGCGATCCGCTTCCGCCGCGAGGCGAAGGCATC
CGGAAACATTTACGTGCCCGCCGAGTCCAAGGTGGTTCTCGTCATCCGCA
TCCGAGGTATCATCGGGGTCTCGCCTAAGGTTCGCAAGATCCTGCAGCTG
TTGCGCCTTCGCCAGATCAACAACACGGTCTTCGTGAAGCTGAACGCGGC
AACCATCAAGATGCTCCGCCTCGTGGAGCCGTACATCGCTTACGGCTACC
CTAACCTCAAGACCGTGCGCGAGCTTATCTACAAGCGCGGCTTCGGCAAG
GTCAGCAAGCAGCGTATCCCAATCTCGGATAACTCGGTCGTAGAGGGCTC
TCTCGGCAAGTTCGGTATCATCTGCGTGGAGGACCTGATCCACGAGATCT
ACACGGTGGGACCGCACTTCAAGGAGGCCAACAACTTCCTGTGGCCCTTC
AAGCTCTCCAACCCCAATGGAGGGTTCCGCCAGAAGCTGCTCCACTTCAA
CGAGGGTGGTGACGCCGGCCAGCGCGGGACGAAGATCAACGGCCTCGTCA
AGCGCATGCTCTGAGACGCTAAAGCCAAGAATGAGGAGATCTTCAAGCGC
GCCGAGCGTTACGTGAAGGAATACCGTGACCAGGAGAACGATGCGATCCG
CTTCCGCCGCGAGGCGAAGGCATCCGGAAACATTTACGTGCCCGCCGAGT
CCAAGGTGGTTCTCGTCATCCGCATCCGAGGTATCATCGGGGTCTCGCCT
AAGGTTCGCAAGATCCTGCAGCTGTTGCGCCTTCGCCAGATCAACAACAC
GGTCTTCGTGAAGCTGAACGCGGCAACCATCAAGATGCTCCGCCTCGTGG
AGCCGTACATCGCTTACGGCTACCCTAACCTCAAGACCGTGCGCGAGCTT
ATCTACAAGCGCGGCTTCGGCAAGGTCAGCAAGCAGCGTATCCCAATCTC
GGATAACTCGGTCGTAGAGGGCTCTCTCGGCAAGTTCGGTATCATCTGCG
TGGAGGACCTGATCCACGAGATCTACACGGTGGGACCGCACTTCAAGGAG
GCCAACAACTTCCTGTGGCCCTTCAAGCTCTCCAACCCCAATGGAGGGTT
CCGCCAGAAGCTGCTCCACTTCAACGAGGGTGGTGACGCCGGCCAGCGCG
GGACGAAGATCAACGGCCTCGTCAAGCGCATGCTCTGA
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