mRNA_F-serratus_M_contig14.2882.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig14.2882.1
Unique NamemRNA_F-serratus_M_contig14.2882.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig14.2882.1 vs. uniprot
Match: D8LCH7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH7_ECTSI)

HSP 1 Score: 275 bits (702), Expect = 1.050e-86
Identity = 186/332 (56.02%), Postives = 227/332 (68.37%), Query Frame = 1 
Query:    4 AFDDIQATAREMREDLRVKRSEVLDLKLSLQRVRASNERRHEKLLERWASKAEAAAAEKRATAEHQRTFTIKLKKDVEALEERLDAMERQVRQFHDGRGRNCVLAKAECARNLKKAREEWMRAEKGRLRETTDKKAGAMKQAAARALEPQLAELVKSNRVEARAHAEDLETALLGLQATLERESTEQVHDEAKEFQHILEDEAEEERRQAEHQLKLVVRSNEVDVQEFREAVRRDLEDEKVRFEAARKRARVAAAKEIETVRAAETDRADITLAENARELREAEEAYRKEEDETRRRLAQETDRWQRRAGASRCKDAEERAEIRKREAREKV 999
            AF+D+QATAR M+ DL+ +RSEVLDLK +LQRVRASNERR  K+ ERWA++                 F  +LK DV+ALEE+L  +ERQV +F +GR R+CV+A+AE AR LKKARE WM AEKGRL+  ++KKAGA+KQAA RALEPQL ELVK+NR EARA A++L   LLGLQA+LERES+E+V  EA+++Q  LE E EEERRQAEHQ++L+ RSNE D+QEFREA RRDLE E+VRFEA R                                      A+R+EE E RRRLA+ET RWQ++  AS  K AEE  EI KREAREKV
Sbjct:    3 AFEDVQATARAMKVDLKERRSEVLDLKTNLQRVRASNERRRAKVSERWAARMAXXXXXXXXXXXXXXXFARQLKGDVDALEEKLGGLERQVGRFREGRDRDCVVARAESARELKKAREAWMAAEKGRLQRLSEKKAGAIKQAAVRALEPQLTELVKANRAEARARADELGEVLLGLQASLERESSEKVQMEARDYQLSLEGEVEEERRQAEHQVRLLGRSNEADIQEFREATRRDLEGERVRFEAGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAHRQEEAEARRRLAEETGRWQKQVQASARKGAEEHDEIAKREAREKV 334
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BLAST of mRNA_F-serratus_M_contig14.2882.1 vs. uniprot
Match: A0A6H5J9S5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9S5_9PHAE)

HSP 1 Score: 76.6 bits (187), Expect = 3.340e-12
Identity = 48/94 (51.06%), Postives = 62/94 (65.96%), Query Frame = 1 
Query:    4 AFDDIQATAREMREDLRVKRSEVLDLKLSLQRVRASNERRHEKLLERWASKAEAAAAEKRATAEHQRTFTIKLKKDVEALEERLDAMERQVRQF 285
            AF+D+QATAR M+ +L+ +RSEVLDLK +LQRVRASNERR  K+ ERWA++  A                  LK DV+ALEE+L  +ERQ  +F
Sbjct:  180 AFEDVQATARAMKVNLKERRSEVLDLKTNLQRVRASNERRRAKVSERWAARMAAXXXXXXXXXXXXXXXXXXLKGDVDALEEKLGGLERQASRF 273
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2882.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCH7_ECTSI1.050e-8656.02Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9S5_9PHAE3.340e-1251.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:268247..271590 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons7
Model size1026
Cds size1026
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929381.8451521-CDS-F-serratus_M_contig14:268246..2684231622929381.8451521-CDS-F-serratus_M_contig14:268246..268423Fucus serratus maleCDSF-serratus_M_contig14 268247..268423 -
1690962825.896163-CDS-F-serratus_M_contig14:268246..2684231690962825.896163-CDS-F-serratus_M_contig14:268246..268423Fucus serratus maleCDSF-serratus_M_contig14 268247..268423 -
1622929381.8624904-CDS-F-serratus_M_contig14:268989..2691541622929381.8624904-CDS-F-serratus_M_contig14:268989..269154Fucus serratus maleCDSF-serratus_M_contig14 268990..269154 -
1690962825.903987-CDS-F-serratus_M_contig14:268989..2691541690962825.903987-CDS-F-serratus_M_contig14:268989..269154Fucus serratus maleCDSF-serratus_M_contig14 268990..269154 -
1622929381.8769712-CDS-F-serratus_M_contig14:269474..2695941622929381.8769712-CDS-F-serratus_M_contig14:269474..269594Fucus serratus maleCDSF-serratus_M_contig14 269475..269594 -
1690962825.9120514-CDS-F-serratus_M_contig14:269474..2695941690962825.9120514-CDS-F-serratus_M_contig14:269474..269594Fucus serratus maleCDSF-serratus_M_contig14 269475..269594 -
1622929381.8912802-CDS-F-serratus_M_contig14:269892..2700781622929381.8912802-CDS-F-serratus_M_contig14:269892..270078Fucus serratus maleCDSF-serratus_M_contig14 269893..270078 -
1690962825.922809-CDS-F-serratus_M_contig14:269892..2700781690962825.922809-CDS-F-serratus_M_contig14:269892..270078Fucus serratus maleCDSF-serratus_M_contig14 269893..270078 -
1622929381.9029863-CDS-F-serratus_M_contig14:270273..2703781622929381.9029863-CDS-F-serratus_M_contig14:270273..270378Fucus serratus maleCDSF-serratus_M_contig14 270274..270378 -
1690962825.9340334-CDS-F-serratus_M_contig14:270273..2703781690962825.9340334-CDS-F-serratus_M_contig14:270273..270378Fucus serratus maleCDSF-serratus_M_contig14 270274..270378 -
1622929381.9160182-CDS-F-serratus_M_contig14:271034..2712381622929381.9160182-CDS-F-serratus_M_contig14:271034..271238Fucus serratus maleCDSF-serratus_M_contig14 271035..271238 -
1690962825.9438925-CDS-F-serratus_M_contig14:271034..2712381690962825.9438925-CDS-F-serratus_M_contig14:271034..271238Fucus serratus maleCDSF-serratus_M_contig14 271035..271238 -
1622929381.9345505-CDS-F-serratus_M_contig14:271521..2715901622929381.9345505-CDS-F-serratus_M_contig14:271521..271590Fucus serratus maleCDSF-serratus_M_contig14 271522..271590 -
1690962825.953942-CDS-F-serratus_M_contig14:271521..2715901690962825.953942-CDS-F-serratus_M_contig14:271521..271590Fucus serratus maleCDSF-serratus_M_contig14 271522..271590 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2882.1prot_F-serratus_M_contig14.2882.1Fucus serratus malepolypeptideF-serratus_M_contig14 268247..271590 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig14.2882.1

>prot_F-serratus_M_contig14.2882.1 ID=prot_F-serratus_M_contig14.2882.1|Name=mRNA_F-serratus_M_contig14.2882.1|organism=Fucus serratus male|type=polypeptide|length=342bp
QAFDDIQATAREMREDLRVKRSEVLDLKLSLQRVRASNERRHEKLLERWA
SKAEAAAAEKRATAEHQRTFTIKLKKDVEALEERLDAMERQVRQFHDGRG
RNCVLAKAECARNLKKAREEWMRAEKGRLRETTDKKAGAMKQAAARALEP
QLAELVKSNRVEARAHAEDLETALLGLQATLERESTEQVHDEAKEFQHIL
EDEAEEERRQAEHQLKLVVRSNEVDVQEFREAVRRDLEDEKVRFEAARKR
ARVAAAKEIETVRAAETDRADITLAENARELREAEEAYRKEEDETRRRLA
QETDRWQRRAGASRCKDAEERAEIRKREAREKVRHATLVDE*
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mRNA from alignment at F-serratus_M_contig14:268247..271590-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig14.2882.1 ID=mRNA_F-serratus_M_contig14.2882.1|Name=mRNA_F-serratus_M_contig14.2882.1|organism=Fucus serratus male|type=mRNA|length=3344bp|location=Sequence derived from alignment at F-serratus_M_contig14:268247..271590- (Fucus serratus male)
CAAGCGTTCGACGACATCCAGGCCACCGCACGAGAGATGCGTGAAGATCT
CAGAGTGAAGAGGTCTGAGGTGGGCGAGCAGTATTTGAGGCAAAGACGTG
GTTTTGGCCTTGCGAGTGTGAAAATAAGGGTTGCGGCAGACCACGGGTAT
CGCCAAGAGAAGTCCAGTGGTAGACCCCGAAGATGAAATGTAGAGAGGTC
TTTGTTCATGGTTTGAACGATCGCAAAGCGTAATTGATTATATCACCGCA
AGACAGATGAGTACCACACCAGACATGGCAAATATTGAGATGCCTGAGCG
TTTCCCGGGGAAATGTTATGTATGGTGGAATGTTTATTTTGCTCAACCGT
AGGTACTTGACCTCAAGTTGAGCCTGCAACGAGTACGAGCTTCCAACGAA
CGACGTCATGAAAAGTTGCTGGAGCGGTGGGCTTCAAAGGCTGAGGCAGC
CGCGGCGGAGAAGAGGGCCACGGCGGAGCATCAGCGAACATTCACCATCA
AGCTCAAGAAAGATGTGGAAGCTTTGGAAGAGAGACTTGACGCAATGGAA
AGACAGGTCAAGTTGGTCACCCTCTGTACGGTGGGGCTCATTGTCTCTCC
CTCCCATATAGTAGATTGGTAGTCTATTCTCCTATGTAGCGGAATGTCGA
AACGCTCTCACTTGATTGCAAGTGTAGTACGATGTACGAGTCCCACCATA
TTTACACCGCAAACGCCCCGAGGGTTTCGAAAGCTGAAGACGAGCACGCG
AAAGCTCGTATACATCCCGGCTACGGACTGACGACGGCGCGATTGCGAAG
AGTTCTTCCTTAAGTTTTATTTACTCTGGGGATGGGATGCAAATGAATTT
GTCGCGCGATTTCATCGGCGAGGGAGACGACGCACGGTTGTCATTGGACC
TACATTTATTCGAGTGCCACGGAAGCGTCAGAGCACTTACTGAAATTTTC
GTTTTTCTGCGGATGAGATGCAAATGAACTGGTCGTGCGATTTTGTCAGA
GAAGGAAACGACGCACAGTTATCATTGGACCTACGTTTATTCGGGAATCA
CAAGAGCGTCACTGAGGCGCTTGTGTTCCGTGAGGAGGAAAAGTGCCACA
AAGAAGGACGGGAGATGGTAATACTCACGATACGGGTCGCCTAACTCATC
CAGCGCTCGACGCTAGTCTCCTATTTTGCTCCCTTTCTCGGCGTTTGGAT
CGTCTGCTCAAGGTCCGTCAATTTCACGACGGAAGAGGAAGGAACTGCGT
CCTCGCCAAAGCAGAGTGCGCGCGCAATCTAAAGAAGGCTCGAGAGGAGT
GGATGAGAGCAGAAAAGGTGTCTGAAGGGGAGATTAAGGGAGGAGCAAAA
GCCGTGGGTGTTTTATCAGGCTTTGGTGGGTCATTCTACTCGTAGGAGTA
TCCTTGTAAACATTAATGCTTGCTGGTGTGAGCGTGGTACAGCAAAGATA
GAGCCGCTATGAACGTGCGCGCTCGTGCCACGTTACCATACTACCGACGC
TTTGTAACACAGGGACGCCTGCGGGAGACAACGGACAAGAAGGCCGGGGC
AATGAAACAAGCGGCGGCCCGAGCGCTTGAGCCGCAGCTCGCGGAGCTAG
TGAAATCCAACAGAGTGGAAGCGAGAGCTCACGCGGAAGATCTAGAAACG
GCGCTACTAGGTCTTCAGGCGACGCTTGAGCGAGAAAGCACTGAGCAGGT
GCGCGACCAAGGCGGGGAGACTTATCATCCGTATCTACGCTACACATTGT
TTAGAGCTGTGAAGACAATACACACGACGCGAGCTTCAAGCGCTGCCGTA
GAGAGGAAGGCGAAATCCCAATCTAGATGCCTGTTTTGTGGTGTGGTCAG
ACAAGGCTTTAAAATTTCCCTCAACCGCAGTGCCGGCTGTTGATGTGTTG
CTAATTGATCGTTCTCTTGTCGTCGAAGGCGTCCCTTCGTGTGCGTGCTA
CACGGACATCGAACCCCTCTTAATCAATATTTTGTTTTTAGTTCAGGTGC
ACGACGAGGCAAAAGAGTTTCAACATATCTTAGAGGACGAAGCTGAGGAA
GAGAGGCGACAAGCCGAGCATCAGCTAAAGCTTGTTGTAAGGAGCAACGA
GGTCGACGTTCAAGAGGTACAACCCTAGCAAATAAGCCCATTATTTGGCA
GTCCTTTCGGCTTGGAGGCTTGCCGATCTGTCGTGCTCGAGTCCATCCTT
CTCCAATCGTCACTGCGCCAAACGCTAGTATCCCCGATTCTCTCTTCTGT
GCATACATGGTGCTGCCAAAAGTGAGCAAGGCCTTGAAGCGTCGCTCTCA
TCCCAACCCCCCTTGTCTACGCTTCTCTTTTTTCGATTCGAGGGAAAGCT
GTAGTTTTCACGTTCAGATATTTCTTCAAAGCGACTGTTTGTTGTACCTG
CCACACACTTTTTTCTTCTGCCGCGGATGTCGTCAGTTTCGAGAAGCAGT
GCGCCGAGATCTGGAGGATGAAAAGGTTCGTTTCGAGGCTGCAAGAAAGC
GGGCGCGAGTGGCCGCCGCCAAGGAAATCGAGACGGTCCGAGCAGCAGAG
ACCGACCGGGCGGATATCACGCTGGCGGAGAACGCCAGAGAACTCCGAGA
GGTAGGGGACACGCATTACCACTGCATGCGTAAAGTCACTTGAAGGACAC
CCATCTTATCACAGGGTGTAGTAAGCTGGATGCTTGCAAATCGGTTTCTT
CGTTGGCGCAGCCTTTCGGACTGGAAGAGGGTGACTAAGAGACGTCAGAT
TAGAGGAAATTTAACCTGAAATTCTCCACCCATCCTTTGAACTCTTCGCA
ATAAGCGCTTGTCAGCGTTTCACGCAAGCAAGAGTATGGGGACGAGAAAT
AGTACAAGTTTGGTGGTAGATCTTAAAAAATACGCCAAAGATGAAACAAA
AAGTTGTAGCATGTGCTATTAACAACACTCCTGGCGTAAAAAAACGCTAC
GCTAGAGTGAAAATGGCATGTTACTGCTCCCTCCTGTTACATGTCGTCGC
TGATTCAAAGCTCTAGCCAGGGGAGAGCGAGTTACGCGCAACTGTAACAC
CGGTCACGAGTTGAGCCGTGTGTGTGTTATACCCGTTTTCTTGCCCTACG
TAACTCTTTGACACGGGGAACGTGGTTAAGCTCTTTCCACCGAAAACCCA
ATTTCGACTTTGTGCAGGCGGAGGAGGCGTACCGAAAGGAAGAGGACGAG
ACTCGTCGGAGACTAGCCCAGGAGACGGATAGATGGCAGCGACGAGCTGG
CGCATCTAGGTGCAAGGACGCAGAAGAGCGAGCAGAAATAAGGAAGCGAG
AGGCGAGGGAAAAAGTGAGACACGCAACGTTGGTGGATGAGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig14:268247..271590-

>mRNA_F-serratus_M_contig14.2882.1 ID=mRNA_F-serratus_M_contig14.2882.1|Name=mRNA_F-serratus_M_contig14.2882.1|organism=Fucus serratus male|type=CDS|length=2052bp|location=Sequence derived from alignment at F-serratus_M_contig14:268247..271590- (Fucus serratus male)
CAAGCGTTCGACGACATCCAGGCCACCGCACGAGAGATGCGTGAAGATCT
CAGAGTGAAGAGGTCTGAGCAAGCGTTCGACGACATCCAGGCCACCGCAC
GAGAGATGCGTGAAGATCTCAGAGTGAAGAGGTCTGAGGTACTTGACCTC
AAGTTGAGCCTGCAACGAGTACGAGCTTCCAACGAACGACGTCATGAAAA
GTTGCTGGAGCGGTGGGCTTCAAAGGCTGAGGCAGCCGCGGCGGAGAAGA
GGGCCACGGCGGAGCATCAGCGAACATTCACCATCAAGCTCAAGAAAGAT
GTGGAAGCTTTGGAAGAGAGACTTGACGCAATGGAAAGACAGGTACTTGA
CCTCAAGTTGAGCCTGCAACGAGTACGAGCTTCCAACGAACGACGTCATG
AAAAGTTGCTGGAGCGGTGGGCTTCAAAGGCTGAGGCAGCCGCGGCGGAG
AAGAGGGCCACGGCGGAGCATCAGCGAACATTCACCATCAAGCTCAAGAA
AGATGTGGAAGCTTTGGAAGAGAGACTTGACGCAATGGAAAGACAGGTCC
GTCAATTTCACGACGGAAGAGGAAGGAACTGCGTCCTCGCCAAAGCAGAG
TGCGCGCGCAATCTAAAGAAGGCTCGAGAGGAGTGGATGAGAGCAGAAAA
GGTCCGTCAATTTCACGACGGAAGAGGAAGGAACTGCGTCCTCGCCAAAG
CAGAGTGCGCGCGCAATCTAAAGAAGGCTCGAGAGGAGTGGATGAGAGCA
GAAAAGGGACGCCTGCGGGAGACAACGGACAAGAAGGCCGGGGCAATGAA
ACAAGCGGCGGCCCGAGCGCTTGAGCCGCAGCTCGCGGAGCTAGTGAAAT
CCAACAGAGTGGAAGCGAGAGCTCACGCGGAAGATCTAGAAACGGCGCTA
CTAGGTCTTCAGGCGACGCTTGAGCGAGAAAGCACTGAGCAGGGACGCCT
GCGGGAGACAACGGACAAGAAGGCCGGGGCAATGAAACAAGCGGCGGCCC
GAGCGCTTGAGCCGCAGCTCGCGGAGCTAGTGAAATCCAACAGAGTGGAA
GCGAGAGCTCACGCGGAAGATCTAGAAACGGCGCTACTAGGTCTTCAGGC
GACGCTTGAGCGAGAAAGCACTGAGCAGGTGCACGACGAGGCAAAAGAGT
TTCAACATATCTTAGAGGACGAAGCTGAGGAAGAGAGGCGACAAGCCGAG
CATCAGCTAAAGCTTGTTGTAAGGAGCAACGAGGTCGACGTTCAAGAGGT
GCACGACGAGGCAAAAGAGTTTCAACATATCTTAGAGGACGAAGCTGAGG
AAGAGAGGCGACAAGCCGAGCATCAGCTAAAGCTTGTTGTAAGGAGCAAC
GAGGTCGACGTTCAAGAGTTTCGAGAAGCAGTGCGCCGAGATCTGGAGGA
TGAAAAGGTTCGTTTCGAGGCTGCAAGAAAGCGGGCGCGAGTGGCCGCCG
CCAAGGAAATCGAGACGGTCCGAGCAGCAGAGACCGACCGGGCGGATATC
ACGCTGGCGGAGAACGCCAGAGAACTCCGAGAGTTTCGAGAAGCAGTGCG
CCGAGATCTGGAGGATGAAAAGGTTCGTTTCGAGGCTGCAAGAAAGCGGG
CGCGAGTGGCCGCCGCCAAGGAAATCGAGACGGTCCGAGCAGCAGAGACC
GACCGGGCGGATATCACGCTGGCGGAGAACGCCAGAGAACTCCGAGAGGC
GGAGGAGGCGTACCGAAAGGAAGAGGACGAGACTCGTCGGAGACTAGCCC
AGGAGACGGATAGATGGCAGCGACGAGCTGGCGCATCTAGGTGCAAGGAC
GCAGAAGAGCGAGCAGAAATAAGGAAGCGAGAGGCGAGGGAAAAAGTGAG
ACACGCAACGTTGGTGGATGAGTGAGCGGAGGAGGCGTACCGAAAGGAAG
AGGACGAGACTCGTCGGAGACTAGCCCAGGAGACGGATAGATGGCAGCGA
CGAGCTGGCGCATCTAGGTGCAAGGACGCAGAAGAGCGAGCAGAAATAAG
GAAGCGAGAGGCGAGGGAAAAAGTGAGACACGCAACGTTGGTGGATGAGT
GA
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