mRNA_F-serratus_M_contig14.2881.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig14.2881.1
Unique NamemRNA_F-serratus_M_contig14.2881.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig14.2881.1 vs. uniprot
Match: D8LCH6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCH6_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 3.520e-27
Identity = 66/114 (57.89%), Postives = 74/114 (64.91%), Query Frame = 1 
Query:    1 KARERQERWRSRLDRLHEECLEERKAVRADVSRLEDRAEEAETSARTVTXXXXXXXXXXXXXXXXXFNQAGWKVAVVLKKKMEQANALRERLATLQAQTKAREEELSDHRRRAF 342
            K  E +ERWRSRL+RL EEC EERKAVR  VSRL +RAE AE +AR                    F Q   KVA VL +K EQA+AL+ERL +LQ QTKAREEELSDHRRR F
Sbjct:    7 KLEEGRERWRSRLERLQEECSEERKAVREQVSRLTERAEGAEAAARRAAGVREDKSAGLRASLSAEFAQVEAKVAAVLGRKTEQADALKERLTSLQGQTKAREEELSDHRRRTF 120
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BLAST of mRNA_F-serratus_M_contig14.2881.1 vs. uniprot
Match: A0A6H5JCC7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCC7_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 5.090e-27
Identity = 63/108 (58.33%), Postives = 71/108 (65.74%), Query Frame = 1 
Query:   19 ERWRSRLDRLHEECLEERKAVRADVSRLEDRAEEAETSARTVTXXXXXXXXXXXXXXXXXFNQAGWKVAVVLKKKMEQANALRERLATLQAQTKAREEELSDHRRRAF 342
            ERWRSRL RL EEC EERKA + +VSRL +RAE AE +AR                    F Q   KVA VL +K EQANAL+ERL++LQ QTKAREEELSDHRRR F
Sbjct:   26 ERWRSRLKRLQEECSEERKAAKEEVSRLSERAEGAEAAARRAAGFREDESAGLRASLSAEFAQVEGKVAAVLSRKTEQANALKERLSSLQGQTKAREEELSDHRRRTF 133
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2881.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCH6_ECTSI3.520e-2757.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCC7_9PHAE5.090e-2758.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:257139..258083 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_005090.1
Exons3
Model size348
Cds size348
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2881.1prot_F-serratus_M_contig14.2881.1Fucus serratus malepolypeptideF-serratus_M_contig14 257139..258083 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929381.7554371-CDS-F-serratus_M_contig14:257138..2572341622929381.7554371-CDS-F-serratus_M_contig14:257138..257234Fucus serratus maleCDSF-serratus_M_contig14 257139..257234 -
1690962825.8556275-CDS-F-serratus_M_contig14:257138..2572341690962825.8556275-CDS-F-serratus_M_contig14:257138..257234Fucus serratus maleCDSF-serratus_M_contig14 257139..257234 -
1622929381.799941-CDS-F-serratus_M_contig14:257412..2574481622929381.799941-CDS-F-serratus_M_contig14:257412..257448Fucus serratus maleCDSF-serratus_M_contig14 257413..257448 -
1690962825.8704548-CDS-F-serratus_M_contig14:257412..2574481690962825.8704548-CDS-F-serratus_M_contig14:257412..257448Fucus serratus maleCDSF-serratus_M_contig14 257413..257448 -
1622929381.811443-CDS-F-serratus_M_contig14:257867..2580831622929381.811443-CDS-F-serratus_M_contig14:257867..258083Fucus serratus maleCDSF-serratus_M_contig14 257868..258083 -
1690962825.8837774-CDS-F-serratus_M_contig14:257867..2580831690962825.8837774-CDS-F-serratus_M_contig14:257867..258083Fucus serratus maleCDSF-serratus_M_contig14 257868..258083 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig14.2881.1

>prot_F-serratus_M_contig14.2881.1 ID=prot_F-serratus_M_contig14.2881.1|Name=mRNA_F-serratus_M_contig14.2881.1|organism=Fucus serratus male|type=polypeptide|length=116bp
KARERQERWRSRLDRLHEECLEERKAVRADVSRLEDRAEEAETSARTVTR
EAEEEQAALRVSLTVEFNQAGWKVAVVLKKKMEQANALRERLATLQAQTK
AREEELSDHRRRAFC*
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mRNA from alignment at F-serratus_M_contig14:257139..258083-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig14.2881.1 ID=mRNA_F-serratus_M_contig14.2881.1|Name=mRNA_F-serratus_M_contig14.2881.1|organism=Fucus serratus male|type=mRNA|length=945bp|location=Sequence derived from alignment at F-serratus_M_contig14:257139..258083- (Fucus serratus male)
AAGGCCCGTGAACGGCAGGAGAGATGGCGGTCCAGGCTCGACCGGCTACA
CGAGGAGTGCTTGGAGGAGCGCAAGGCCGTGAGGGCGGACGTTTCCCGCC
TCGAGGACAGAGCAGAAGAAGCGGAAACTTCGGCGCGGACGGTGACCCGC
GAGGCAGAAGAAGAACAAGCCGCCCTCAGGGTTTCCCTAACGGTCGAGTT
CAATCAGGCGGGTTGGGTAGGGACGAGAGTACGTCCGAAGTGCTGATCAA
ATGATAGGTTGAAGTCGTACTGGATTGACGATTGGCTGTCATTAGAGAAA
ACGGGGATGGAGGGGAAAATTAAAGTGAAGCATTGATGGTATTCGTCGGC
GTCCGTGCGTATGTAAGGTAAATACACCCCGTCACCTCCCGTCGAAAAAC
AAGACGTTCATTATCGTCACGAGGAATTCCTTACAATCAACGCCTTTCGC
TCGAAAAGGAGAGAAGGCTCGTGGTCCGTGCTGGTGCGTGACCTCAACCC
AGAGACAGAATTTTCCTCCACCGCTCGGACCACCTGGCGATTTCAAAATT
CGACTAAAGAAGTGCTTATTCCCCGAGGACCCTCTCCTGTCCTGATACGT
TGTTATTGCGTACTGGGTGCCACCAGGTGGAAGAGAAGGTCGCCGTGGTA
CTCAAGAAAAAGATGGAGCAGGTGATGGCATTCTGTTGTCTGGTGGGCGC
ACCACATCCCCAGACACCCGCATCCTAGACCCTTTAGAATAGTCTCGTTC
CAACTTCTGCAAATAAGTTTCACGACCCTTGGCTAGTTTCTCTTACATTA
ATAGTTAGCACTTTGTTTGGTGTATCATACTACATTCTCCCTACAACAGG
CGAACGCACTGAGGGAACGCCTGGCCACCCTTCAGGCGCAGACAAAGGCA
AGGGAGGAAGAGCTATCCGACCACCGACGGCGGGCCTTCTGCTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig14:257139..258083-

>mRNA_F-serratus_M_contig14.2881.1 ID=mRNA_F-serratus_M_contig14.2881.1|Name=mRNA_F-serratus_M_contig14.2881.1|organism=Fucus serratus male|type=CDS|length=696bp|location=Sequence derived from alignment at F-serratus_M_contig14:257139..258083- (Fucus serratus male)
AAGGCCCGTGAACGGCAGGAGAGATGGCGGTCCAGGCTCGACCGGCTACA
CGAGGAGTGCTTGGAGGAGCGCAAGGCCGTGAGGGCGGACGTTTCCCGCC
TCGAGGACAGAGCAGAAGAAGCGGAAACTTCGGCGCGGACGGTGACCCGC
GAGGCAGAAGAAGAACAAGCCGCCCTCAGGGTTTCCCTAACGGTCGAGTT
CAATCAGGCGGGTTGGAAGGCCCGTGAACGGCAGGAGAGATGGCGGTCCA
GGCTCGACCGGCTACACGAGGAGTGCTTGGAGGAGCGCAAGGCCGTGAGG
GCGGACGTTTCCCGCCTCGAGGACAGAGCAGAAGAAGCGGAAACTTCGGC
GCGGACGGTGACCCGCGAGGCAGAAGAAGAACAAGCCGCCCTCAGGGTTT
CCCTAACGGTCGAGTTCAATCAGGCGGGTTGGAAGGTCGCCGTGGTACTC
AAGAAAAAGATGGAGCAGAAGGTCGCCGTGGTACTCAAGAAAAAGATGGA
GCAGGCGAACGCACTGAGGGAACGCCTGGCCACCCTTCAGGCGCAGACAA
AGGCAAGGGAGGAAGAGCTATCCGACCACCGACGGCGGGCCTTCTGCTGA
GCGAACGCACTGAGGGAACGCCTGGCCACCCTTCAGGCGCAGACAAAGGC
AAGGGAGGAAGAGCTATCCGACCACCGACGGCGGGCCTTCTGCTGA
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