mRNA_F-serratus_M_contig14.2872.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig14.2872.1
Unique NamemRNA_F-serratus_M_contig14.2872.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig14.2872.1 vs. uniprot
Match: D8LCH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCH1_ECTSI)

HSP 1 Score: 56.6 bits (135), Expect = 7.660e-9
Identity = 22/34 (64.71%), Postives = 28/34 (82.35%), Query Frame = 3 
Query:    6 ACAPLFEKYKECIKREREAIKKAQMDGPPRSIFG 107
            AC P FE+YKEC++RE +A+KKAQ +GPPR  FG
Sbjct:   29 ACGPFFERYKECLQRESDALKKAQREGPPRRFFG 62
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2872.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCH1_ECTSI7.660e-964.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig14contigF-serratus_M_contig14:97961..98756 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size275
Cds size180
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig14.2872.1prot_F-serratus_M_contig14.2872.1Fucus serratus malepolypeptideF-serratus_M_contig14 98056..98756 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929378.2633321-UTR-F-serratus_M_contig14:97960..980551622929378.2633321-UTR-F-serratus_M_contig14:97960..98055Fucus serratus maleUTRF-serratus_M_contig14 97961..98055 -
1690962824.4697094-UTR-F-serratus_M_contig14:97960..980551690962824.4697094-UTR-F-serratus_M_contig14:97960..98055Fucus serratus maleUTRF-serratus_M_contig14 97961..98055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929378.2809482-CDS-F-serratus_M_contig14:98055..981641622929378.2809482-CDS-F-serratus_M_contig14:98055..98164Fucus serratus maleCDSF-serratus_M_contig14 98056..98164 -
1690962824.4799588-CDS-F-serratus_M_contig14:98055..981641690962824.4799588-CDS-F-serratus_M_contig14:98055..98164Fucus serratus maleCDSF-serratus_M_contig14 98056..98164 -
1622929378.2983449-CDS-F-serratus_M_contig14:98685..987561622929378.2983449-CDS-F-serratus_M_contig14:98685..98756Fucus serratus maleCDSF-serratus_M_contig14 98686..98756 -
1690962824.4916875-CDS-F-serratus_M_contig14:98685..987561690962824.4916875-CDS-F-serratus_M_contig14:98685..98756Fucus serratus maleCDSF-serratus_M_contig14 98686..98756 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig14.2872.1

>prot_F-serratus_M_contig14.2872.1 ID=prot_F-serratus_M_contig14.2872.1|Name=mRNA_F-serratus_M_contig14.2872.1|organism=Fucus serratus male|type=polypeptide|length=60bp
RRLVHPCSRSTRNVSSASGKQLKRRRWTDRQGAFSARFIFRVFGLLSQHE
HKEDRDHRE*
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mRNA from alignment at F-serratus_M_contig14:97961..98756-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig14.2872.1 ID=mRNA_F-serratus_M_contig14.2872.1|Name=mRNA_F-serratus_M_contig14.2872.1|organism=Fucus serratus male|type=mRNA|length=796bp|location=Sequence derived from alignment at F-serratus_M_contig14:97961..98756- (Fucus serratus male)
AGGAGGCTTGTGCACCCTTGTTCGAGAAGTACAAGGAATGTATCAAGCGC
GAGCGGGAAGCAATTAAAAAGGTGAAGTGTGTGTCTGTTTGTGTCTGTTT
GTGTGTGTTTGTGTGTGTGTGTGTCTGTTTGTGTGTGTTTGTGTGTGTTT
GTGTGTGTGTGTGTGTGTTTTCCCGTAGATATATGTATTTGCAGTAGTTC
AGCGGATTATTTCGTCAGGCTGATGCGGTCATGATGCACCCGAACCCGCC
TCGGCGCATCCGTGGCTCAGAGCCAACCGCACTTTTCCGTCCAAGCCTGA
GGAGCGTCGTCATCCGACGGTAGCTCGGCAGGGAGGAGTGATACAGGGAG
ACGCCCCCCCGCGATTGACTACCGCACGCAGTGACCGTAGAGACCGCTCG
ACGGGGTTCATTTGATTTGAACCTCCCCTCCCTAACATTCTTTACAGGCA
GAATATGTACAGCACGTGACTCACTCAAGTTTATACCTCAATCAGTGCGG
CTCCAACGAGACGACTGGTTCGGGTCTTGCGTAACTCTCGTAATCCGCTC
ACCCGCTTCTCCGGCAACCGTGATCGGATCGCGTCCCGTCAGGCGCAGAT
GGACGGACCGCCAAGGAGCATTTTCGGCTAGGTTTATTTTCCGTGTGTTT
GGATTATTGTCGCAACACGAGCACAAGGAGGATAGGGATCATCGGGAGTG
ATTGTAGGGATTAGATCAACTGCCGTAGACATGTAGAGGCGATCGGCCGC
CTTCTGCTACCTGGAGGGCAGAGCGCGCGACAGGATTGTTAATACT
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Coding sequence (CDS) from alignment at F-serratus_M_contig14:97961..98756-

>mRNA_F-serratus_M_contig14.2872.1 ID=mRNA_F-serratus_M_contig14.2872.1|Name=mRNA_F-serratus_M_contig14.2872.1|organism=Fucus serratus male|type=CDS|length=360bp|location=Sequence derived from alignment at F-serratus_M_contig14:97961..98756- (Fucus serratus male)
AGGAGGCTTGTGCACCCTTGTTCGAGAAGTACAAGGAATGTATCAAGCGC
GAGCGGGAAGCAATTAAAAAGAGGAGGCTTGTGCACCCTTGTTCGAGAAG
TACAAGGAATGTATCAAGCGCGAGCGGGAAGCAATTAAAAAGGCGCAGAT
GGACGGACCGCCAAGGAGCATTTTCGGCTAGGTTTATTTTCCGTGTGTTT
GGATTATTGTCGCAACACGAGCACAAGGAGGATAGGGATCATCGGGAGTG
AGCGCAGATGGACGGACCGCCAAGGAGCATTTTCGGCTAGGTTTATTTTC
CGTGTGTTTGGATTATTGTCGCAACACGAGCACAAGGAGGATAGGGATCA
TCGGGAGTGA
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