mRNA_F-serratus_M_contig14.2869.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig14.2869.1 vs. uniprot
Match: D8LCG2_ECTSI (Rhomboid domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCG2_ECTSI) HSP 1 Score: 345 bits (884), Expect = 4.080e-115 Identity = 166/267 (62.17%), Postives = 211/267 (79.03%), Query Frame = 3
Query: 246 WQDNRPLNEQILSYPATCFLVVSFIAVFVLMSRRRVSPAAMGSSYRHLFVRAEWWRVVTAAFTHGGLLHLIFNMTALWVCRRMEADLGSWGYLLASAHLMILAEVFEKLLLHVLLMTGRFVDEISIGYSGVTFAWMTVISLKPE-PSAQFAGLALGGFANVVFNLLAMRVLIRRSSFTGHVAGILAGLVFSAGGLEFARQ-RFWGAGIAVWALAIFFGSLKATTTSMPVPLVDYVDISSRRNELGVEVVPLDWSNREYFEEYVMDNA 1040
W D RPL+EQ+ +YPATC L + VF+ M RRRVS A+MGSSYR+L VR EWWRVVTAA HGGLLHL F++++LW CRR+E +LGSWGYLLASAH ++LAEVFEK+ +HVLL TGR VDE+S GYSGV FAW+ V+SL+P+ P+ G GFA+VV NL+ +R+LIR+SSF GH+AG+ AGL+FS G L+FAR+ R+W G+A WALA+ GSLKATTT +P+PL+DYVD+S R ++LGV V PLDWSNRE+ E++ NA
Sbjct: 41 WSDARPLSEQLPTYPATCVLSAVLVTVFLAMWRRRVSAASMGSSYRNLLVRQEWWRVVTAAVAHGGLLHLAFSISSLWSCRRIETELGSWGYLLASAHFVVLAEVFEKMFMHVLLRTGRVVDEVSCGYSGVVFAWIVVLSLRPDAPARVIGGFVFSGFASVVLNLVVVRILIRQSSFVGHLAGVWAGLLFSTGALDFAREDRYWSLGLAAWALAVLLGSLKATTT-IPIPLIDYVDLSGR-DDLGVGVAPLDWSNREWLEDWAAANA 305
BLAST of mRNA_F-serratus_M_contig14.2869.1 vs. uniprot
Match: UPI00053C5208 (RHOMBOID-like protein 13 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C5208) HSP 1 Score: 110 bits (276), Expect = 1.030e-24 Identity = 73/228 (32.02%), Postives = 127/228 (55.70%), Query Frame = 3
Query: 258 RPLNEQILSYPATCFLVVSFIAVFVLMSRRRVSPAAMGSSYRHLFVRAEWWRVVTAAFTHGGLLHLIFNMTALWVCRRME----ADLGSWGYLLASAHLMILAEVFEKLLLHVLLMTGR---FVDEISIGYSGVTFAWMTVISLKPEPSAQFAGLALGGFANVVFN------LLAMRVLIRRSSFTGHVAGILAGLVFSAGGLEFARQRFWGAGIAVWALAIFFGSLK 902
RPL +L PAT ++ V+ ++ ++ + A +G SY + V +WR++T+AF+H +LHL+FNM+ALW +E A LG+ YL + L++L+ V + H+L++ + F ++GYS V F WMT++S+K +PS++ L L GF ++ + L+ +++ ++SF GH++GIL G S G + +W + W + +F SLK
Sbjct: 3 RPLFYDVLEKPATSCIITLCSVVWFVIQKKSIGYAQVGLSYENA-VEGHYWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGHAGLGAGYYLHYTLVLIVLSGVLVLGIYHLLIVRFKVDYFRRVTAVGYSCVVFGWMTILSVK-QPSSK---LDLFGFLSLPISFAPFESLVFTSIIVPQASFLGHLSGILVGYAISWGMIG-GMNNYWALTMLGWIVVVFVISLK 224
BLAST of mRNA_F-serratus_M_contig14.2869.1 vs. uniprot
Match: UPI00053C6C9D (RHOMBOID-like protein 13 n=1 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C6C9D) HSP 1 Score: 110 bits (275), Expect = 1.430e-24 Identity = 74/228 (32.46%), Postives = 125/228 (54.82%), Query Frame = 3
Query: 258 RPLNEQILSYPATCFLVVSFIAVFVLMSRRRVSPAAMGSSYRHLFVRAEWWRVVTAAFTHGGLLHLIFNMTALWVCRRME----ADLGSWGYLLASAHLMILAEVFEKLLLHVLLMTGR---FVDEISIGYSGVTFAWMTVISLKPEPSAQFAGLALGGFANVVFN------LLAMRVLIRRSSFTGHVAGILAGLVFSAGGLEFARQRFWGAGIAVWALAIFFGSLK 902
RPL IL PAT ++ +++++ ++ + + +G SY V +WR++T+AF+H +LHL+FNM+ALW +E LG YL + L+IL+ V + H+L++ + F ++GYS V F WMT++S+K +PS++ L L GF ++ + L+ +++ ++SF GH++GIL G S G L +W + W L +F SLK
Sbjct: 3 RPLFYDILEKPATSCIITICSVIWLVIQKKNIGYSQVGLSYETA-VEGHYWRIITSAFSHISILHLVFNMSALWSLGVVEELGHVGLGMAYYLHYTLVLVILSGVLVLGIYHLLIVRFKIDYFRRVTAVGYSCVVFGWMTILSVK-QPSSK---LDLFGFLSLPISFAPFESLIFTSIIVPQASFVGHLSGILVGYAISWG-LIGGMNNYWALTMLGWMLVVFVFSLK 224
BLAST of mRNA_F-serratus_M_contig14.2869.1 vs. uniprot
Match: UPI00129E0426 (RHOMBOID-like protein 13 n=1 Tax=Nymphaea colorata TaxID=210225 RepID=UPI00129E0426) HSP 1 Score: 109 bits (272), Expect = 4.000e-24 Identity = 75/232 (32.33%), Postives = 126/232 (54.31%), Query Frame = 3
Query: 258 RPLNEQILSYPATCFLVVSFIAVFVLMSRRRVSPAAMGSSYRHLFVRAEWWRVVTAAFTHGGLLHLIFNMTALWVCRRMEA----DLGSWGYLLASAHLMILAEVFEKLLLHVLLMTGR---FVDEISIGYSGVTFAWMTVISLKPEPSAQFAGLALGGFANVVFN------LLAMRVLIRRSSFTGHVAGILAGLVFSAGGLEFARQRFWGAGIAVWALAIFFGSLKATTT 914
RPL ++L PAT ++ A++ + ++ V + +G SY + WR++T+AF+H ++HL+FNM+ALW +E LG YL + L++L+ V LL HVL+ + F ++GYS V F WMT++++K +PS++ L L GF ++ + L+ +++ ++SF GH++GI+ G A GL +W I W + +F SLK T T
Sbjct: 3 RPLVFEVLEKPATSCIIGLCSAIWFYIQKKNVGYSNVGLSYEAA-LDGHHWRLITSAFSHISVIHLVFNMSALWSLGVIEKLGHIGLGVEFYLQYTLVLVVLSGVLVLLLYHVLIQKFKLEYFRRVTAVGYSCVVFGWMTILAVK-QPSSK---LNLFGFLSLPISFAPFESLIFTSIIVPQASFIGHLSGIIVGYSI-AWGLIHGMNNYWAVSILGWIILVFVFSLKQTGT 228
BLAST of mRNA_F-serratus_M_contig14.2869.1 vs. uniprot
Match: A0A068TQ07_COFCA (Rhomboid domain-containing protein n=3 Tax=Coffea TaxID=13442 RepID=A0A068TQ07_COFCA) HSP 1 Score: 108 bits (271), Expect = 5.560e-24 Identity = 71/228 (31.14%), Postives = 125/228 (54.82%), Query Frame = 3
Query: 258 RPLNEQILSYPATCFLVVSFIAVFVLMSRRRVSPAAMGSSYRHLFVRAEWWRVVTAAFTHGGLLHLIFNMTALWVCRRMEA----DLGSWGYLLASAHLMILAEVFEKLLLHVLLMTGR---FVDEISIGYSGVTFAWMTVISLKPEPSAQFAGLALGGFANVVFN------LLAMRVLIRRSSFTGHVAGILAGLVFSAGGLEFARQRFWGAGIAVWALAIFFGSLK 902
+PL +I+ PAT ++ F A++ + ++ + + +G SY V WWR++T+AF+H +LHL+FNM+ALW +E LG YL S L++L+ + + H L++ + F ++GYS V F WMT++++K +PS++ L L GF ++ + L+ +++ ++SF GH++GI+ G G L +W + +W + IF SLK
Sbjct: 3 KPLIYEIMEKPATSCMIGIFSAIWFYIQKKGIGYSHVGLSYETA-VEGHWWRIITSAFSHISVLHLVFNMSALWSLGVVEQLGHIGLGVKYYLHYSLVLVVLSGLLVLGMYHFLILRFKIEYFRRVTAVGYSCVVFGWMTILAVK-QPSSK---LDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAIGWG-LIHGMNNYWAFSMLLWIVIIFVLSLK 224
BLAST of mRNA_F-serratus_M_contig14.2869.1 vs. uniprot
Match: A0A7J6DVW6_CANSA (Rhomboid domain-containing protein n=4 Tax=Rosales TaxID=3744 RepID=A0A7J6DVW6_CANSA) HSP 1 Score: 108 bits (269), Expect = 1.070e-23 Identity = 72/228 (31.58%), Postives = 124/228 (54.39%), Query Frame = 3
Query: 258 RPLNEQILSYPATCFLVVSFIAVFVLMSRRRVSPAAMGSSYRHLFVRAEWWRVVTAAFTHGGLLHLIFNMTALWVCRRMEA----DLGSWGYLLASAHLMILAEVFEKLLLHVLLMTGR---FVDEISIGYSGVTFAWMTVISLKPEPSAQFAGLALGGFANVVFN------LLAMRVLIRRSSFTGHVAGILAGLVFSAGGLEFARQRFWGAGIAVWALAIFFGSLK 902
RPL +IL PAT ++ A++ + ++ + + +G SY + + WR++T+AF+H +LHL+FNM+ALW +E LG YL + L++L+ + + HVL+ + F ++GYS V F WMT++S++ +PS++ L L GF ++ + L+ +++ ++SF GH++GI+ G A GL FW + W L +F SLK
Sbjct: 3 RPLIYEILEKPATSCIIGLCSAIWFYIQKKNIGYSHVGLSYENA-IEGHHWRIITSAFSHISILHLVFNMSALWSLGVVEKLGPLGLGVEYYLHYTLVLVVLSGILVLGMYHVLIQRFKIEYFRRVTAVGYSCVVFGWMTILSVR-QPSSK---LDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAI-AWGLIHGMNNFWAISMLGWILLVFVFSLK 224
BLAST of mRNA_F-serratus_M_contig14.2869.1 vs. uniprot
Match: A0A0A0K961_CUCSA (Rhomboid domain-containing protein n=10 Tax=Cucurbitaceae TaxID=3650 RepID=A0A0A0K961_CUCSA) HSP 1 Score: 107 bits (268), Expect = 1.490e-23 Identity = 74/233 (31.76%), Postives = 126/233 (54.08%), Query Frame = 3
Query: 258 RPLNEQILSYPATCFLVVSFIAVFVLMSRRRVSPAAMGSSYRHLFVRAEWWRVVTAAFTHGGLLHLIFNMTALWVCRRMEADLGSWG-----YLLASAHLMILAEVFEKLLLHVLLMTGR---FVDEISIGYSGVTFAWMTVISLKPEPSAQFAGLALGGFANVVFN------LLAMRVLIRRSSFTGHVAGILAGLVFSAGGLEFARQRFWGAGIAVWALAIFFGSLKATTT 914
RPL +IL PAT ++ A++ + ++ + + +G SY V WR++T+AF+H ++HL+FNM+ALW +E LG G YL + L+IL+ V + H+L+ + F ++GYS V F WMT++S++ +PS++ L L GF ++ + L+ +++ ++SF GH++GI+ G A GL FW + W + +F SLK + T
Sbjct: 3 RPLFYEILEKPATSGIIGICCAIWFYIQKKNIGYSHVGLSYETA-VEGHHWRIITSAFSHISVIHLVFNMSALWSLGAVE-QLGHIGLGVPYYLHYTLVLVILSGVLVLGMYHLLIQKFKLEYFRRVTAVGYSCVVFGWMTILSVR-QPSSK---LDLFGFLSLPISFAPFESLIFTSIIVPQASFLGHLSGIIVGYAI-AWGLIHGMNNFWAISMLGWVVLVFIFSLKKSNT 228
BLAST of mRNA_F-serratus_M_contig14.2869.1 vs. uniprot
Match: A0A1Q3D9I1_CEPFO (Rhomboid domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3D9I1_CEPFO) HSP 1 Score: 107 bits (268), Expect = 1.580e-23 Identity = 74/229 (32.31%), Postives = 123/229 (53.71%), Query Frame = 3
Query: 258 RPLNEQILSYPATCFLVVSFIAVFVLMSRRRVSPAAMGSSYRHLFVRAEWWRVVTAAFTHGGLLHLIFNMTALWVCRRMEADLGSWG-----YLLASAHLMILAEVFEKLLLHVLLMTGR---FVDEISIGYSGVTFAWMTVISLKPEPSAQFAGLALGGFANVVFN------LLAMRVLIRRSSFTGHVAGILAGLVFSAGGLEFARQRFWGAGIAVWALAIFFGSLK 902
+PL +IL PAT ++ A++ + ++ + + +G SY H V WR+VT+AF+H +LHL+FNM+ALW +E LG G YL + L++ + V ++ H+L+ + F ++GYS V F WMT++S+K +PS + L L GF ++ + L+ +++ ++SF GH+AGI+ G A GL +W + W +F SLK
Sbjct: 3 KPLLYEILEKPATSCVIGICSAIWFYIHKKNIGYSHVGLSYEHA-VEGNHWRIVTSAFSHISVLHLVFNMSALWSLGVVE-QLGQIGLGVEYYLHYTLVLVVFSGVLVLVMYHLLIQRFKVDYFRRVTAVGYSCVVFGWMTILSIK-QPSLK---LDLFGFLSLPISFAPFESLIFTSIIVPQASFIGHLAGIIVGYAI-AWGLIHGMNNYWAISMLGWIAIVFVFSLK 224
BLAST of mRNA_F-serratus_M_contig14.2869.1 vs. uniprot
Match: A0A7S1CN55_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CN55_9STRA) HSP 1 Score: 107 bits (266), Expect = 1.610e-23 Identity = 73/197 (37.06%), Postives = 102/197 (51.78%), Query Frame = 3
Query: 258 RPLNEQILSYPATCFLVVSFIAVFVLMSRRRVSPAAMGSSYRHLFVRAEWWRVVTAAFTHGGLLHLIFNMTALWVCRRMEADLGSWGYLLASAHLMILAEVFEK---LLLHVLLMTGRFVDEISIGYSGVTFAWMTVIS-LKPEPSAQFAG-----LALGGFANVVFNLLAMRVLIRRSSFTGHVAGILAGLVFSAG 821
R L Q L P T LVV AV+ RR+ + SY L R ++WR V+AAF+H LHL+FNM +LW C ME LGS YL + L++L+ LL R+ + ++GYS V F WMT+++ L+P S G L L F + LL ++++RR+S GH+AGI AG + G
Sbjct: 3 RGLVSQALDMPVTSLLVVVCSAVWFHCWNRRIGAENVAVSYDLLVRRRQYWRAVSAAFSHLNALHLLFNMASLWACGAMEVALGSAVYLHVTLLLLLLSTSMAMGGYWLLSKRFGLRRYETQTAVGYSCVVFGWMTIMAQLRPTSSIPLPGGINLPLNLAPFTS----LLITQLIVRRASLIGHLAGIFAGFFIAWG 195
BLAST of mRNA_F-serratus_M_contig14.2869.1 vs. uniprot
Match: A0A3S3MPQ6_9MAGN (RHOMBOID-like protein 13 n=2 Tax=Cinnamomum micranthum f. kanehirae TaxID=337451 RepID=A0A3S3MPQ6_9MAGN) HSP 1 Score: 107 bits (267), Expect = 2.060e-23 Identity = 75/232 (32.33%), Postives = 124/232 (53.45%), Query Frame = 3
Query: 258 RPLNEQILSYPATCFLVVSFIAVFVLMSRRRVSPAAMGSSYRHLFVRAEWWRVVTAAFTHGGLLHLIFNMTALWVCRRMEA----DLGSWGYLLASAHLMILAEVFEKLLLHVLLMTGR---FVDEISIGYSGVTFAWMTVISLKPEPSAQFAGLALGGFANVVFN------LLAMRVLIRRSSFTGHVAGILAGLVFSAGGLEFARQRFWGAGIAVWALAIFFGSLKATTT 914
+PL +IL PAT ++ A++ + ++ + A +G SY V +WR++T+AF+H +LHL+FNM+ALW +E LG YL + L++L+ HVL+ R F ++GYS V F WMT++++K +PS++ L L GF ++ + L+ +++ ++SF GH++GI+ G A GL +W + W + IF SLK T T
Sbjct: 3 KPLFYEILQKPATSCIIGICSAIWFYIQKKNIGYAQVGVSY-DTAVDGHYWRLITSAFSHISVLHLVFNMSALWSLGVVEQLGHIGLGVEFYLQYTLVLVVLSGALVLGAYHVLIQKFRIDYFRRVTAVGYSCVVFGWMTILAVK-QPSSK---LDLFGFLSLPISFAPFESLIFTSIIVPQASFVGHLSGIIVGYSI-AWGLIHGMNNYWAVSMLGWIILIFVFSLKRTGT 228 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig14.2869.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig14.2869.1 >prot_F-serratus_M_contig14.2869.1 ID=prot_F-serratus_M_contig14.2869.1|Name=mRNA_F-serratus_M_contig14.2869.1|organism=Fucus serratus male|type=polypeptide|length=323bp MENSTVGVVPHLVVVGTGGNALSNPAAGATSTAATAAAAASTAAAAASTAback to top mRNA from alignment at F-serratus_M_contig14:67167..79696- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig14.2869.1 ID=mRNA_F-serratus_M_contig14.2869.1|Name=mRNA_F-serratus_M_contig14.2869.1|organism=Fucus serratus male|type=mRNA|length=12530bp|location=Sequence derived from alignment at F-serratus_M_contig14:67167..79696- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig14:67167..79696- >mRNA_F-serratus_M_contig14.2869.1 ID=mRNA_F-serratus_M_contig14.2869.1|Name=mRNA_F-serratus_M_contig14.2869.1|organism=Fucus serratus male|type=CDS|length=1938bp|location=Sequence derived from alignment at F-serratus_M_contig14:67167..79696- (Fucus serratus male)back to top |