mRNA_F-serratus_M_contig1399.2863.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1399.2863.1
Unique NamemRNA_F-serratus_M_contig1399.2863.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1399.2863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1399contigF-serratus_M_contig1399:80579..80907 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size329
Cds size300
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929377.8336694-UTR-F-serratus_M_contig1399:80578..806071622929377.8336694-UTR-F-serratus_M_contig1399:80578..80607Fucus serratus maleUTRF-serratus_M_contig1399 80579..80607 +
1690962824.3231032-UTR-F-serratus_M_contig1399:80578..806071690962824.3231032-UTR-F-serratus_M_contig1399:80578..80607Fucus serratus maleUTRF-serratus_M_contig1399 80579..80607 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929377.8459325-CDS-F-serratus_M_contig1399:80607..809071622929377.8459325-CDS-F-serratus_M_contig1399:80607..80907Fucus serratus maleCDSF-serratus_M_contig1399 80608..80907 +
1690962824.3398001-CDS-F-serratus_M_contig1399:80607..809071690962824.3398001-CDS-F-serratus_M_contig1399:80607..80907Fucus serratus maleCDSF-serratus_M_contig1399 80608..80907 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1399.2863.1prot_F-serratus_M_contig1399.2863.1Fucus serratus malepolypeptideF-serratus_M_contig1399 80608..80907 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1399.2863.1

>prot_F-serratus_M_contig1399.2863.1 ID=prot_F-serratus_M_contig1399.2863.1|Name=mRNA_F-serratus_M_contig1399.2863.1|organism=Fucus serratus male|type=polypeptide|length=100bp
MPLLGLCDRGSSAGWVWRAWRGAIHFSTRARRVRVCKCLPRRHGIRLTPH
TKPLFTSLLDQQSSSLSETRYTIVNRQRVVYFLRQSGVSICHSQVVVFK*
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mRNA from alignment at F-serratus_M_contig1399:80579..80907+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1399.2863.1 ID=mRNA_F-serratus_M_contig1399.2863.1|Name=mRNA_F-serratus_M_contig1399.2863.1|organism=Fucus serratus male|type=mRNA|length=329bp|location=Sequence derived from alignment at F-serratus_M_contig1399:80579..80907+ (Fucus serratus male)
CACATCAACACTCTGATTTAATCTACCCCATGCCCTTGCTAGGTCTCTGT
GATCGAGGGTCGTCGGCGGGGTGGGTATGGCGAGCATGGCGGGGAGCGAT
ACATTTTTCTACTCGGGCAAGGCGTGTGCGTGTGTGCAAATGTTTACCCA
GGCGCCATGGTATACGCCTAACGCCACATACGAAACCGTTATTTACATCG
TTACTCGACCAACAATCTTCCAGCCTTTCAGAGACACGGTACACCATTGT
GAACCGTCAACGAGTCGTATATTTCTTAAGGCAGTCCGGAGTCTCGATCT
GCCATTCCCAGGTTGTGGTGTTCAAGTAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1399:80579..80907+

>mRNA_F-serratus_M_contig1399.2863.1 ID=mRNA_F-serratus_M_contig1399.2863.1|Name=mRNA_F-serratus_M_contig1399.2863.1|organism=Fucus serratus male|type=CDS|length=600bp|location=Sequence derived from alignment at F-serratus_M_contig1399:80579..80907+ (Fucus serratus male)
ATGCCCTTGCTAGGTCTCTGTGATCGAGGGTCGTCGGCGGGGTGGGTATG
GCGAGCATGGCGGGGAGCGATACATTTTTCTACTCGGGCAAGGCGTGTGC
GTGTGTGCAAATGTTTACCCAGGCGCCATGGTATACGCCTAACGCCACAT
ACGAAACCGTTATTTACATCGTTACTCGACCAACAATCTTCCAGCCTTTC
AGAGACACGGTACACCATTGTGAACCGTCAACGAGTCGTATATTTCTTAA
GGCAGTCCGGAGTCTCGATCTGCCATTCCCAGGTTGTGGTGTTCAAGTAG
ATGCCCTTGCTAGGTCTCTGTGATCGAGGGTCGTCGGCGGGGTGGGTATG
GCGAGCATGGCGGGGAGCGATACATTTTTCTACTCGGGCAAGGCGTGTGC
GTGTGTGCAAATGTTTACCCAGGCGCCATGGTATACGCCTAACGCCACAT
ACGAAACCGTTATTTACATCGTTACTCGACCAACAATCTTCCAGCCTTTC
AGAGACACGGTACACCATTGTGAACCGTCAACGAGTCGTATATTTCTTAA
GGCAGTCCGGAGTCTCGATCTGCCATTCCCAGGTTGTGGTGTTCAAGTAG
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