mRNA_F-serratus_M_contig1398.2861.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1398.2861.1
Unique NamemRNA_F-serratus_M_contig1398.2861.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1398.2861.1 vs. uniprot
Match: A0A6H5JHK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHK9_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.030e-14
Identity = 38/87 (43.68%), Postives = 49/87 (56.32%), Query Frame = 1
Query:   22 FAGCVARMEDTRLPKYVMFGEMVGGAGCVGGQEKEWMGCFPDDLRAFGINADQ----WTTAAQDEGKWRRTAEQGAEHFMAKWIAAE 270
            FAG V RMED+RLPK ++ GEM  G G  GGQE +W+    +DL AF +  ++    W  +A+D   W    E GA  FM KW   E
Sbjct:  114 FAGFVMRMEDSRLPKRMLLGEMARGVGYRGGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDSEVWYNKVEDGAAWFMRKWHRQE 200          
BLAST of mRNA_F-serratus_M_contig1398.2861.1 vs. uniprot
Match: A0A6H5JMA1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMA1_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 2.580e-14
Identity = 37/83 (44.58%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   34 VARMEDTRLPKYVMFGEMVGGAGCVGGQEKEWMGCFPDDLRAFGINADQ----WTTAAQDEGKWRRTAEQGAEHFMAKWIAAE 270
            + RMED RLPK ++ GEM GGAG  GGQE +W+    +DL AFG+  ++    W  +A+D+  W    E GA  FM KW   E
Sbjct:  141 IMRMEDNRLPKRMLLGEMAGGAGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFMRKWHRQE 223          
BLAST of mRNA_F-serratus_M_contig1398.2861.1 vs. uniprot
Match: A0A6H5L6M5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6M5_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 9.700e-13
Identity = 35/83 (42.17%), Postives = 47/83 (56.63%), Query Frame = 1
Query:    1 LRRRWILFAGCVARMEDTRLPKYVMFGEMVGGAGCVGGQEKEWMGCFPDDLRAFGINAD----QWTTAAQDEGKWRRTAEQGA 237
            +R+R + FAG V RMED RLPK ++ GEM GG    GGQE  W+    +DL AF +  +    +W  +A+D   W    E GA
Sbjct:  112 VRKRRLCFAGFVMRMEDNRLPKRMLLGEMAGGGEYRGGQESHWVSRVGEDLVAFNMGDEKEGGEWKESAKDSEVWNNKVEDGA 194          
BLAST of mRNA_F-serratus_M_contig1398.2861.1 vs. uniprot
Match: UPI00165228C0 (uncharacterized protein LOC118478942 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00165228C0)

HSP 1 Score: 67.4 bits (163), Expect = 2.680e-12
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 1
Query:   43 MEDTRLPKYVMFGEMVGGAGCVGGQEKEWMGCFPDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFMAKWIAAEKVKAGLR 291
            M D+RLPK +M+GE++ G   VGGQ+K +  C    L+  GI  D W   AQD   WR    +GA+   AK IA  K K  +R
Sbjct:    1 MADSRLPKQLMYGELLHGKRSVGGQKKRFKDCLKISLKELGILNDSWEMLAQDRPSWRCKLTKGAKAAEAKRIAEAKQKHNVR 83          
BLAST of mRNA_F-serratus_M_contig1398.2861.1 vs. uniprot
Match: UPI00035A230D (uncharacterized protein LOC101847595 n=1 Tax=Aplysia californica TaxID=6500 RepID=UPI00035A230D)

HSP 1 Score: 68.6 bits (166), Expect = 2.080e-11
Identity = 41/96 (42.71%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    4 RRRWILFAGCVARMEDTRLPKYVMFGEMVGGAGCVGGQEKEWMGCFPDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFMAKWIAAEKVKAGLR 291
            R RW   AG V RM D+RLPK +M+GE++ G   V GQ+K +  C    L+  GI  D   T AQD   WR    +GA+   AK IA  K K  +R
Sbjct:  520 RARW---AGHVIRMADSRLPKQLMYGELLHGKRSVRGQKKRFKDCLKVSLKELGILNDLCETLAQDRPTWRCKLTKGAKAAEAKRIAEAKQKRNVR 612          
BLAST of mRNA_F-serratus_M_contig1398.2861.1 vs. uniprot
Match: A0A6P4ZXC7_BRABE (protocadherin Fat 4-like n=1 Tax=Branchiostoma belcheri TaxID=7741 RepID=A0A6P4ZXC7_BRABE)

HSP 1 Score: 66.6 bits (161), Expect = 1.050e-10
Identity = 32/79 (40.51%), Postives = 46/79 (58.23%), Query Frame = 1
Query:    1 LRRRWILFAGCVARMEDTRLPKYVMFGEMVGGAGCVGGQEKEWMGCFPDDLRAFGINADQWTTAAQDEGKWRRTAEQGA 237
            LRR  + +AG + RM DTRLPK +++ E+V G   VGGQ+K +       L++F I+   W +AAQ+   WR     GA
Sbjct:  291 LRRAQVRWAGHLVRMPDTRLPKRLLYSELVEGKRSVGGQKKRFKDTLKTTLKSFKIDTSTWESAAQNRAAWRSHISSGA 369          
BLAST of mRNA_F-serratus_M_contig1398.2861.1 vs. uniprot
Match: A0A7M3PRY6_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PRY6_SPIER)

HSP 1 Score: 65.9 bits (159), Expect = 1.820e-10
Identity = 35/97 (36.08%), Postives = 51/97 (52.58%), Query Frame = 1
Query:    1 LRRRWILFAGCVARMEDTRLPKYVMFGEMVGGAGCVGGQEKEWMGCFPDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFMAKWIAAEKVKAGLR 291
            LR+  +  +G + RM+D RLPK +++G++  G+ C GGQ + +       L+   IN  +W   A D   WRRT +  A    A  IAA KVK   R
Sbjct:  145 LRQMQLRRSGHLVRMDDERLPKRLIYGDVATGSRCQGGQIRRYKNTLKSSLKRLQINPTKWEELALDRPTWRRTVKTSAAIHEANRIAAAKVKREAR 241          
BLAST of mRNA_F-serratus_M_contig1398.2861.1 vs. uniprot
Match: A0A7M3PXV5_SPIER (Hypothetical protein n=1 Tax=Spirometra erinaceieuropaei TaxID=99802 RepID=A0A7M3PXV5_SPIER)

HSP 1 Score: 65.9 bits (159), Expect = 1.870e-10
Identity = 35/97 (36.08%), Postives = 52/97 (53.61%), Query Frame = 1
Query:    1 LRRRWILFAGCVARMEDTRLPKYVMFGEMVGGAGCVGGQEKEWMGCFPDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFMAKWIAAEKVKAGLR 291
            LR+  + ++G + RM+D RLPK +++G++  G+   GGQ + +       L+   IN   W   A D   WRRT + GA  + A  IAA KVK   R
Sbjct:  414 LRQIQLRWSGHLVRMDDERLPKRLLYGDVATGSRRQGGQIRRYKDTLKSSLKCLQINPTNWEELALDRPTWRRTLKTGAAIYEANRIAAAKVKCEAR 510          
BLAST of mRNA_F-serratus_M_contig1398.2861.1 vs. uniprot
Match: A0A654HMC6_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HMC6_9CEST)

HSP 1 Score: 65.5 bits (158), Expect = 2.250e-10
Identity = 33/90 (36.67%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   22 FAGCVARMEDTRLPKYVMFGEMVGGAGCVGGQEKEWMGCFPDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFMAKWIAAEKVKAGLR 291
            ++G + RM+D RLPK +++G++V G+   GGQ + +       L+   +N   W   A D   WRRT + GA  + A  IAA KVK   R
Sbjct:    5 WSGHLVRMDDERLPKRLLYGDVVTGSRRQGGQIRRYKDTLKSSLKRLQLNPTNWEELALDRPTWRRTVKTGAAIYEANHIAAAKVKREAR 94          
BLAST of mRNA_F-serratus_M_contig1398.2861.1 vs. uniprot
Match: A0A654HW91_9CEST (Uncharacterized protein n=1 Tax=Sparganum proliferum TaxID=64606 RepID=A0A654HW91_9CEST)

HSP 1 Score: 64.3 bits (155), Expect = 6.640e-10
Identity = 34/97 (35.05%), Postives = 51/97 (52.58%), Query Frame = 1
Query:    1 LRRRWILFAGCVARMEDTRLPKYVMFGEMVGGAGCVGGQEKEWMGCFPDDLRAFGINADQWTTAAQDEGKWRRTAEQGAEHFMAKWIAAEKVKAGLR 291
            LR+  + ++G + RM+D RLPK +++G++  G+   G Q + +       L+   IN   W   A D   WRRT + GA  + A  IAA KVK   R
Sbjct:  745 LRQMQLRWSGHLVRMDDERLPKRLIYGDVATGSRRQGSQIRRYKDTLKSSLKRLQINPTNWEEIAHDRPTWRRTVKTGAAIYEANRIAAAKVKREAR 841          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1398.2861.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHK9_9PHAE1.030e-1443.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMA1_9PHAE2.580e-1444.58Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L6M5_9PHAE9.700e-1342.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00165228C02.680e-1242.17uncharacterized protein LOC118478942 n=1 Tax=Aplys... [more]
UPI00035A230D2.080e-1142.71uncharacterized protein LOC101847595 n=1 Tax=Aplys... [more]
A0A6P4ZXC7_BRABE1.050e-1040.51protocadherin Fat 4-like n=1 Tax=Branchiostoma bel... [more]
A0A7M3PRY6_SPIER1.820e-1036.08Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A7M3PXV5_SPIER1.870e-1036.08Hypothetical protein n=1 Tax=Spirometra erinaceieu... [more]
A0A654HMC6_9CEST2.250e-1036.67Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]
A0A654HW91_9CEST6.640e-1035.05Uncharacterized protein n=1 Tax=Sparganum prolifer... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1398contigF-serratus_M_contig1398:136950..137240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score78.6
Seed ortholog evalue1.8e-12
Seed eggNOG ortholog6500.XP_005092354.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelBilateria
Best eggNOG OGNA|NA|NA
Exons1
Model size291
Cds size291
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929377.7278278-CDS-F-serratus_M_contig1398:136949..1372401622929377.7278278-CDS-F-serratus_M_contig1398:136949..137240Fucus serratus maleCDSF-serratus_M_contig1398 136950..137240 -
1690962824.2802494-CDS-F-serratus_M_contig1398:136949..1372401690962824.2802494-CDS-F-serratus_M_contig1398:136949..137240Fucus serratus maleCDSF-serratus_M_contig1398 136950..137240 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1398.2861.1prot_F-serratus_M_contig1398.2861.1Fucus serratus malepolypeptideF-serratus_M_contig1398 136950..137240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1398.2861.1

>prot_F-serratus_M_contig1398.2861.1 ID=prot_F-serratus_M_contig1398.2861.1|Name=mRNA_F-serratus_M_contig1398.2861.1|organism=Fucus serratus male|type=polypeptide|length=97bp
LRRRWILFAGCVARMEDTRLPKYVMFGEMVGGAGCVGGQEKEWMGCFPDD
LRAFGINADQWTTAAQDEGKWRRTAEQGAEHFMAKWIAAEKVKAGLR
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mRNA from alignment at F-serratus_M_contig1398:136950..137240-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1398.2861.1 ID=mRNA_F-serratus_M_contig1398.2861.1|Name=mRNA_F-serratus_M_contig1398.2861.1|organism=Fucus serratus male|type=mRNA|length=291bp|location=Sequence derived from alignment at F-serratus_M_contig1398:136950..137240- (Fucus serratus male)
TTACGCAGGAGGTGGATCTTGTTTGCGGGATGTGTGGCGCGCATGGAGGA TACGAGACTGCCGAAGTACGTGATGTTCGGCGAAATGGTGGGGGGCGCGG GCTGTGTGGGGGGCCAGGAAAAAGAGTGGATGGGATGTTTCCCGGACGAT CTCAGAGCTTTCGGCATCAACGCCGACCAGTGGACAACTGCAGCCCAGGA CGAGGGGAAATGGCGCAGAACGGCAGAACAAGGGGCGGAACATTTCATGG CAAAATGGATCGCTGCAGAGAAAGTCAAGGCTGGACTACGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1398:136950..137240-

>mRNA_F-serratus_M_contig1398.2861.1 ID=mRNA_F-serratus_M_contig1398.2861.1|Name=mRNA_F-serratus_M_contig1398.2861.1|organism=Fucus serratus male|type=CDS|length=582bp|location=Sequence derived from alignment at F-serratus_M_contig1398:136950..137240- (Fucus serratus male)
TTACGCAGGAGGTGGATCTTGTTTGCGGGATGTGTGGCGCGCATGGAGGA
TACGAGACTGCCGAAGTACGTGATGTTCGGCGAAATGGTGGGGGGCGCGG
GCTGTGTGGGGGGCCAGGAAAAAGAGTGGATGGGATGTTTCCCGGACGAT
CTCAGAGCTTTCGGCATCAACGCCGACCAGTGGACAACTGCAGCCCAGGA
CGAGGGGAAATGGCGCAGAACGGCAGAACAAGGGGCGGAACATTTCATGG
CAAAATGGATCGCTGCAGAGAAAGTCAAGGCTGGACTACGGTTACGCAGG
AGGTGGATCTTGTTTGCGGGATGTGTGGCGCGCATGGAGGATACGAGACT
GCCGAAGTACGTGATGTTCGGCGAAATGGTGGGGGGCGCGGGCTGTGTGG
GGGGCCAGGAAAAAGAGTGGATGGGATGTTTCCCGGACGATCTCAGAGCT
TTCGGCATCAACGCCGACCAGTGGACAACTGCAGCCCAGGACGAGGGGAA
ATGGCGCAGAACGGCAGAACAAGGGGCGGAACATTTCATGGCAAAATGGA
TCGCTGCAGAGAAAGTCAAGGCTGGACTACGG
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