mRNA_F-serratus_M_contig1398.2858.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1398.2858.1
Unique NamemRNA_F-serratus_M_contig1398.2858.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1398.2858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1398contigF-serratus_M_contig1398:45378..46702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size298
Cds size171
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1398.2858.1prot_F-serratus_M_contig1398.2858.1Fucus serratus malepolypeptideF-serratus_M_contig1398 45378..46576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929376.6066933-CDS-F-serratus_M_contig1398:45377..455461622929376.6066933-CDS-F-serratus_M_contig1398:45377..45546Fucus serratus maleCDSF-serratus_M_contig1398 45378..45546 -
1690962823.7771118-CDS-F-serratus_M_contig1398:45377..455461690962823.7771118-CDS-F-serratus_M_contig1398:45377..45546Fucus serratus maleCDSF-serratus_M_contig1398 45378..45546 -
1622929376.622982-CDS-F-serratus_M_contig1398:46574..465761622929376.622982-CDS-F-serratus_M_contig1398:46574..46576Fucus serratus maleCDSF-serratus_M_contig1398 46575..46576 -
1690962823.7871063-CDS-F-serratus_M_contig1398:46574..465761690962823.7871063-CDS-F-serratus_M_contig1398:46574..46576Fucus serratus maleCDSF-serratus_M_contig1398 46575..46576 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929376.634949-UTR-F-serratus_M_contig1398:46576..467021622929376.634949-UTR-F-serratus_M_contig1398:46576..46702Fucus serratus maleUTRF-serratus_M_contig1398 46577..46702 -
1690962823.7994683-UTR-F-serratus_M_contig1398:46576..467021690962823.7994683-UTR-F-serratus_M_contig1398:46576..46702Fucus serratus maleUTRF-serratus_M_contig1398 46577..46702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1398.2858.1

>prot_F-serratus_M_contig1398.2858.1 ID=prot_F-serratus_M_contig1398.2858.1|Name=mRNA_F-serratus_M_contig1398.2858.1|organism=Fucus serratus male|type=polypeptide|length=57bp
MRWRLKGSQQFGARSDACLTSWYRRENPSGTGRGTRIGLGTGTHEDRDAG
GNRHKNG
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mRNA from alignment at F-serratus_M_contig1398:45378..46702-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1398.2858.1 ID=mRNA_F-serratus_M_contig1398.2858.1|Name=mRNA_F-serratus_M_contig1398.2858.1|organism=Fucus serratus male|type=mRNA|length=1325bp|location=Sequence derived from alignment at F-serratus_M_contig1398:45378..46702- (Fucus serratus male)
CACATGGCGATAAGTGTATAGTGTACAAGTATGACGTTGGATCTCTCCCC
GATATTACATGGTTGACCCTGTACGACTAACATTGGGCAGCCCAACTAAG
AACACCACCCCGTATGGCGATTGAAAATGTAAGTGTACAGTATAACGGTG
GGTTTCTCCCCGACACGATACTGTCGACCCAATAATACTGCCACTTTTAA
CTAACTATTATTTTTGTCTCTCACTTATAGCCGATGGACCTCTTCAATAC
CATCCTGCCTTTGGTCACTAAGGTTCTTCCCATCTCTCCCCGGTTCACGC
CTTACGATTTTTTGTCGCAATGCAAGTTCAGCGATCTTACAGGTCGTCAA
CCGATGGCTGAACTTTACTTACTACTCATGTTCCCACGCTTTCCGCTACG
GAAGAAACAACATAAATCCTACTTTGGTAAGAATCGAACTCACGACTTCC
GCACTAGCAGGTGCCCAGCCTTGTCGCCCGAGTGGTCTATATAGTAGGCA
ATCTGCACACCTGCTAGTACGGAGGTCGTGAGATCGATTCTTGGCTAAAT
CAGGATTTTAATTCTTTCTTTCGTAACGGAAAGCGCGAGAACGTGAGTAG
GAAAAATGTAACCATTGGTTCACGAGTTGTAAGAGTGCTGAACTTGCATC
GCGATAAAAAATCGTAAGGCGTGAACCGGGGAGAGGTGGGAAGGTCCTTA
GTGACCACAGGCAGGATGGAATGAGGCCCATCGGCTATAAGTGAGATGAA
AGAAGAAGAAAAGAAAAGGTGTGCAGGTTACTTACTAGACCATTCGGGCG
ACGACCTCAATGGGGAACCGATTAAATGCCATGAAGAGGTTGTATCTTTG
CAGCCTGTGATCCCGCCTAACGTTTTGACATTTTTTCCCCCGCGACTGGG
AGATGCTCAAAAGGTCTAGCTACCTGTAGATGCCTTCAGATTTTTCTTGA
AACGCCACGCGACTTTTGTCCGAAACACTGAATGAATGTTCCAACCTGAA
TATTTCAATGCGGTGACTGTTTCCTCCGTCCGGGTTGTATGGATTCTCGA
ATGGTTTAGATGCGTTCACCTCTTTTTATAAATACACACACACGCGAAGC
AAAGTGTAGGAGATCAGGCACTGTCATTCCGCACACGGCATCATCTTTGC
TGACAGGAGGTGGCGCCTGAAAGGTAGCCAGCAGTTTGGGGCAAGATCCG
ATGCCTGTCTGACTTCGTGGTACAGAAGGGAGAATCCCTCGGGGACGGGA
AGAGGGACGAGGATAGGACTGGGAACGGGAACGCACGAGGACAGAGATGC
GGGCGGAAACAGGCACAAGAATGGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1398:45378..46702-

>mRNA_F-serratus_M_contig1398.2858.1 ID=mRNA_F-serratus_M_contig1398.2858.1|Name=mRNA_F-serratus_M_contig1398.2858.1|organism=Fucus serratus male|type=CDS|length=342bp|location=Sequence derived from alignment at F-serratus_M_contig1398:45378..46702- (Fucus serratus male)
ATATGAGGTGGCGCCTGAAAGGTAGCCAGCAGTTTGGGGCAAGATCCGAT
GCCTGTCTGACTTCGTGGTACAGAAGGGAGAATCCCTCGGGGACGGGAAG
AGGGACGAGGATAGGACTGGGAACGGGAACGCACGAGGACAGAGATGCGG
GCGGAAACAGGCACAAGAATGGAGAGGTGGCGCCTGAAAGGTAGCCAGCA
GTTTGGGGCAAGATCCGATGCCTGTCTGACTTCGTGGTACAGAAGGGAGA
ATCCCTCGGGGACGGGAAGAGGGACGAGGATAGGACTGGGAACGGGAACG
CACGAGGACAGAGATGCGGGCGGAAACAGGCACAAGAATGGA
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