mRNA_F-serratus_M_contig1398.2855.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1398.2855.1
Unique NamemRNA_F-serratus_M_contig1398.2855.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1398.2855.1 vs. uniprot
Match: A0A6H5JDC5_9PHAE (CS domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JDC5_9PHAE)

HSP 1 Score: 393 bits (1010), Expect = 4.920e-124
Identity = 294/738 (39.84%), Postives = 366/738 (49.59%), Query Frame = 1 
Query:   94 SLLATVESLKNRGNVEFHKGKMLANHTAGKNFISDACILYAEALQTLAKVDACI----------------------ARLPRDDD-------VATVSQPKISKEYQENNAE---------ERAGLSNRADTLRPSLYLNLAACNLLLHEWAAAVACCTQVLERC-GDGI--IEA-VASAAESSRDG------------------------CGS--------------------------NGQQRAGGKGH--------------------------HDESNISNGNNTSMWCREMAAKALYRRSSARDGEGDLGLAREDLSTALKLKPGDANIRRELKKVEKHLAEKEAKAKLKRETEEGRRRNRLRQEERHASPLSQTKITTTAFPVGDGSKPSMRSSALAPV-----------SAGKEGPEEPCEHEQDLASRAC---QAVPQADSNDEQGSLQDPATPPGEGEGEAQVEPFPTKNGGECRNGLYAWNQSVRE----------VQVSVKVPDWVRASDVRVDIGRSRLTVAARRAGAGES-----------DTTRKRTQAEPLSST----------------GREWEEVVILAGPLSRPVQVDESVWTLETPGSVLLYLQKELPTDGEPGFEWWATVMEGDEEIDVVKCDAGSDASQYPEHARQRGAKALWDYQQMTPEERREEELNEQRMREAKRQMAEEVEERERNLANALKDPNKAEMYRKLREVMPDTPISMK 1800
            +LLA  ES K+RGNV+FHKGK+LA HTAGKNF+ DAC+LYAE L+ L + DA +                      A    + D        + V  P+   +  +  A          E   LS RADT+RPSLYLNLAACNLLL EW  A+ACCT VL+ C GD +  IEA +    + +RDG                         GS                            QQ+ G  G                            +ES   +       CRE+AAK LYRR++A  G GD+  AREDL  AL+LKP DA I RELKK +K LAE EA+  L+R+TEE                              DG     +  A +P              G +G  E  E++Q    R     +       ++E   L            E   +PF T NGGECRNGLYAWNQS+ E          VQVSVK+P W RASDVRVD+ RSRL+V+     A +             T    T A P +S+                G       +LAG LSRPVQVDE +WT+E PG VLLYLQKELP DGEPGFEWWA VMEGD EIDV+ CDAGSDAS+YPEHAR+RGAKALW++Q  +P+ER    L E+RMR+A RQM EE E+R+R+L  A+KDP KAE+YR+L+++MPDT IS+K
Sbjct:   27 ALLAEAESCKDRGNVDFHKGKVLAKHTAGKNFLRDACVLYAEGLRVLGEADARLLAQRAQQXXXXXXXXXXXXXXXASAADNSDGSRSLTPSSPVPPPREKSQGNDGQASVLPPTLQDRETISLSKRADTVRPSLYLNLAACNLLLQEWTPAIACCTHVLDECCGDALREIEAEIGGTGKEARDGVPGVAQGDRRTASAAANDSTDTTRAGSATGTSTGDATDAALAPTGTGAPPDKRQQQQKEGQSGEIYGEHQGTTAPSRGADREAEPRADPPQEESGGRDREAEKTRCREVAAKCLYRRAAALAGGGDVAAAREDLVRALRLKPRDAAISRELKKADKQLAENEARESLRRKTEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGGAPTQQLARSPAPGADHAVIGGGKGGHQGGVEAPENQQQRGPRVSKEEEGKGSCSGDEESNELSQ----------EQPEQPFSTHNGGECRNGLYAWNQSIDEARAHHSNSCRVQVSVKIPPWARASDVRVDLHRSRLSVSVVIPHADKDRPRGTRPQFSHGTETSATTAGPTASSNAAKDPAPQGVDPGVVGEGETATPVLAGALSRPVQVDECLWTIERPGRVLLYLQKELPADGEPGFEWWACVMEGDPEIDVLACDAGSDASRYPEHARRRGAKALWEHQNKSPKER----LEEERMRDAYRQMEEEAEQRQRDLEKAMKDPRKAELYRQLKKIMPDTSISIK 750
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BLAST of mRNA_F-serratus_M_contig1398.2855.1 vs. uniprot
Match: A0A7S3VZL0_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3VZL0_EMIHU)

HSP 1 Score: 69.7 bits (169), Expect = 6.310e-10
Identity = 58/163 (35.58%), Postives = 79/163 (48.47%), Query Frame = 1 
Query: 1123 KNGGECRNGLYAWNQSVREVQVSVKVPDWVRASDVRVDIGRSRLTVAARRAGAGESDTTRKRTQAEPLSSTGREWEEVVILAGPLSRPVQVDESVWTLETPGSVLLYLQKELPTDGEPGFE--WWATVMEGDEEIDVVKCDAGSDASQ--YPEHARQRGAKAL 1599
            KNGG   +  Y W QS REV +++      R  D RV+I RSR++VAAR                    S G EW+   +L G L RPV  DE  W++E  GS+++ L K    DG  G E  WW  V+ G++ ++    DA + A+    PE  R    KAL
Sbjct:   12 KNGGSGAH--YRWGQSAREVTIAINAGSR-RGRDFRVEINRSRVSVAAR--------------------SCGDEWQH--LLRGELQRPVLTDECEWSVED-GSLIIALAK----DGRLGAEAEWWTGVLAGEDTLEARTADAVAYAALEGLPEEERHLATKAL 144
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BLAST of mRNA_F-serratus_M_contig1398.2855.1 vs. uniprot
Match: A0A7S3RJ00_EMIHU (Hypothetical protein (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RJ00_EMIHU)

HSP 1 Score: 68.9 bits (167), Expect = 9.000e-10
Identity = 62/177 (35.03%), Postives = 85/177 (48.02%), Query Frame = 1 
Query: 1123 KNGGECRNGLYAWNQSVREVQVSVKVPDWVRASDVRVDIGRSRLTVAARRAGAGESDTTRKRTQAEPLSSTGREWEEVVILAGPLSRPVQVDESVWTLETPGSVLLYLQKELPTDGEPGFE--WWATVMEGDEEIDVVKCDAGSDASQ--YPEHARQRGAKALWDYQ--QMTPEERR 1635
            KNGG   +  Y W QS REV +++      R  D RV+I RSR++VAAR                    S G EW+   +L G L RPV  DE  W++E  GS+++ L K    DG  G E  WW  V+ G++ ++    DA + A+    PE  R    KA  + Q    TP +RR
Sbjct:   12 KNGGSGAH--YRWGQSAREVTIAINAGSR-RGRDFRVEINRSRVSVAAR--------------------SCGDEWQH--LLRGELQRPVLTDECEWSVED-GSLIIALAK----DGRLGAEAEWWTGVLAGEDTLEARTADAVAYAALEGLPEEERHLATKAAAERQPRDSTPPQRR 158
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BLAST of mRNA_F-serratus_M_contig1398.2855.1 vs. uniprot
Match: R1DA98_EMIHU (CS domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DA98_EMIHU)

HSP 1 Score: 67.4 bits (163), Expect = 1.120e-9
Identity = 51/142 (35.92%), Postives = 70/142 (49.30%), Query Frame = 1 
Query: 1123 KNGGECRNGLYAWNQSVREVQVSVKVPDWVRASDVRVDIGRSRLTVAARRAGAGESDTTRKRTQAEPLSSTGREWEEVVILAGPLSRPVQVDESVWTLETPGSVLLYLQKELPTDGEPGFE--WWATVMEGDEEIDVVKCDA 1542
            KNGG   +  Y W QS REV +++      R  D RV+I RSR++VAAR                    S G EW+   +L G L RPV  DE  W++E  GS+++ L K    DG  G E  WW  V+ G++ ++    DA
Sbjct:    7 KNGGSGAH--YRWGQSAREVTIAINAGSR-RGRDFRVEINRSRVSVAAR--------------------SCGDEWQH--LLRGELQRPVLTDECEWSVED-GSLIIALAK----DGRLGAEAEWWTGVLAGEDTLEARTADA 118
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BLAST of mRNA_F-serratus_M_contig1398.2855.1 vs. uniprot
Match: R1D443_EMIHU (CS domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D443_EMIHU)

HSP 1 Score: 67.4 bits (163), Expect = 2.200e-9
Identity = 51/142 (35.92%), Postives = 70/142 (49.30%), Query Frame = 1 
Query: 1123 KNGGECRNGLYAWNQSVREVQVSVKVPDWVRASDVRVDIGRSRLTVAARRAGAGESDTTRKRTQAEPLSSTGREWEEVVILAGPLSRPVQVDESVWTLETPGSVLLYLQKELPTDGEPGFE--WWATVMEGDEEIDVVKCDA 1542
            KNGG   +  Y W QS REV +++      R  D RV+I RSR++VAAR                    S G EW+   +L G L RPV  DE  W++E  GS+++ L K    DG  G E  WW  V+ G++ ++    DA
Sbjct:   18 KNGGSGAH--YRWGQSAREVTIAINAGSR-RGRDFRVEINRSRVSVAAR--------------------SCGDEWQH--LLRGELQRPVLTDECEWSVED-GSLIIALAK----DGRLGAEAEWWTGVLAGEDTLEARTADA 129
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BLAST of mRNA_F-serratus_M_contig1398.2855.1 vs. uniprot
Match: R1FSV2_EMIHU (CS domain-containing protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FSV2_EMIHU)

HSP 1 Score: 67.8 bits (164), Expect = 2.340e-9
Identity = 52/146 (35.62%), Postives = 72/146 (49.32%), Query Frame = 1 
Query: 1123 KNGGECRNGLYAWNQSVREVQVSVKVPDWVRASDVRVDIGRSRLTVAARRAGAGESDTTRKRTQAEPLSSTGREWEEVVILAGPLSRPVQVDESVWTLETPGSVLLYLQKELPTDGEPGFE--WWATVMEGDEEIDVVKCDAGSDA 1554
            KNGG   +  Y W QS REV +++      R  D RV+I RSR++VAAR                    S G EW+   +L G L RPV  DE  W++E  GS+++ L K    DG  G E  WW  V+ G++ ++    DA  +A
Sbjct:   18 KNGGSGAH--YRWGQSAREVTIAINAGSR-RGRDFRVEINRSRVSVAAR--------------------SCGDEWQH--LLRGELQRPVLTDECEWSVED-GSLIIALAK----DGRLGAEAEWWTGVLAGEDTLEARTADAVREA 133
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BLAST of mRNA_F-serratus_M_contig1398.2855.1 vs. uniprot
Match: R4XDE4_TAPDE (Nuclear movement protein n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XDE4_TAPDE)

HSP 1 Score: 65.1 bits (157), Expect = 1.530e-8
Identity = 38/133 (28.57%), Postives = 65/133 (48.87%), Query Frame = 1 
Query: 1135 ECRNGLYAWNQSVREVQVSVKVPDWVRASDVRVDIGRSRLTVAARRAGAGESDTTRKRTQAEPLSSTGREWEEVVILAGPLSRPVQVDESVWTLETPGSVLLYLQKELPTDGEPGFEWWATVMEGDEEIDVVK 1533
            E     Y+W+Q+++EV+V++ VP+  R  D+ + IG+++L+V  +                      G+E    V  AG L++ V VDES WT++    + ++L+K          EWW  ++EG   ID  K
Sbjct:   16 ELEQCTYSWSQTLKEVEVTIPVPEGTRGKDLSITIGKNKLSVGLK----------------------GKE----VYFAGTLTKEVHVDESTWTIDDQRELNIHLEKVSQ-------EWWKAIIEGHPAIDTTK 115
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BLAST of mRNA_F-serratus_M_contig1398.2855.1 vs. uniprot
Match: A0A1Y2FNN0_PROLT (Nuclear movement protein nudC n=1 Tax=Protomyces lactucae-debilis TaxID=2754530 RepID=A0A1Y2FNN0_PROLT)

HSP 1 Score: 57.8 bits (138), Expect = 4.800e-6
Identity = 35/127 (27.56%), Postives = 63/127 (49.61%), Query Frame = 1 
Query: 1153 YAWNQSVREVQVSVKVPDWVRASDVRVDIGRSRLTVAARRAGAGESDTTRKRTQAEPLSSTGREWEEVVILAGPLSRPVQVDESVWTLETPGSVLLYLQKELPTDGEPGFEWWATVMEGDEEIDVVK 1533
            Y+W+Q+++EV ++V VP   R  D+ + I  S+L+V  +    G+                       V+ +G L++ V+VD+S WT+++   V ++L+K        G  WW  V++G  +ID  K
Sbjct:   19 YSWSQTLKEVSITVPVPQGTRGKDLDIQILPSKLSVKLK----GQ-----------------------VLFSGSLAKDVKVDDSTWTIDSQREVQIHLEKLN------GTSWWECVIQGHAKIDTTK 112
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BLAST of mRNA_F-serratus_M_contig1398.2855.1 vs. uniprot
Match: A0A1J5WL80_9MICR (Nuclear movement protein nudC n=1 Tax=Amphiamblys sp. WSBS2006 TaxID=1866961 RepID=A0A1J5WL80_9MICR)

HSP 1 Score: 57.0 bits (136), Expect = 7.180e-6
Identity = 44/156 (28.21%), Postives = 70/156 (44.87%), Query Frame = 1 
Query: 1153 YAWNQSVREVQVSVKVPDWVRASDVRVDIGRSRLTVAARRAGAGESDTTRKRTQAEPLSSTGREWEEVVILAGPLSRPVQVDESVWTLETPGSVLLYLQKELPTDGEPGFEWWATVMEGDEEIDVVKC--DAGSDASQYPEHARQRGAKALWDYQQ 1614
            Y W Q+ ++++V+ ++ +   +  V V I R+ +    +    GE                        ++ G L +PV+ +ES W++E    V++YLQK        G EWW  V+EG  +ID  KC  DA S      E  RQ   K L+D +Q
Sbjct:    7 YTWTQTTKDLEVAFELENREDSKKVSVSISRTEIHAGVK----GED----------------------AVIKGKLWKPVETEESTWSVEDGRKVVIYLQKSS------GPEWWPCVVEGGRKIDTTKCVPDASSLCDLTGE-TRQIAEKMLFDQRQ 129
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BLAST of mRNA_F-serratus_M_contig1398.2855.1 vs. uniprot
Match: A0A7R9Y333_9VIRI (Hypothetical protein (Fragment) n=2 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y333_9VIRI)

HSP 1 Score: 58.2 bits (139), Expect = 2.360e-5
Identity = 47/136 (34.56%), Postives = 65/136 (47.79%), Query Frame = 1 
Query: 1126 NGGECRNGLYAWNQSVREVQVSVKVPDWVRASDVRVDIGRSRLTVAARRAGAGESDTTRKRTQAEPLSSTGREWEEVVILAGPLSRPVQVDESVWTLETPGSVLLYLQKELPTDGEPGFEWWATVMEGDEEIDVVK 1533
            NGGE     Y W Q++ EV+V V VP    A  + V I ++ L+VA +    G+          EP            I++G LS+PV VDES+W+LE    V++   K           WW+ V+EGD EID  K
Sbjct:  215 NGGEADG--YTWTQTLSEVEVRVLVPQGTPARALDVRISKNALSVALK----GQ----------EP------------IVSGDLSKPVVVDESMWSLEDKTWVVVTFTKV------DQMCWWSCVLEGDVEIDTQK 316
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1398.2855.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 11
Match NameE-valueIdentityDescription
A0A6H5JDC5_9PHAE4.920e-12439.84CS domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S3VZL0_EMIHU6.310e-1035.58Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
A0A7S3RJ00_EMIHU9.000e-1035.03Hypothetical protein (Fragment) n=1 Tax=Emiliania ... [more]
R1DA98_EMIHU1.120e-935.92CS domain-containing protein n=1 Tax=Emiliania hux... [more]
R1D443_EMIHU2.200e-935.92CS domain-containing protein n=1 Tax=Emiliania hux... [more]
R1FSV2_EMIHU2.340e-935.62CS domain-containing protein n=1 Tax=Emiliania hux... [more]
R4XDE4_TAPDE1.530e-828.57Nuclear movement protein n=1 Tax=Taphrina deforman... [more]
A0A1Y2FNN0_PROLT4.800e-627.56Nuclear movement protein nudC n=1 Tax=Protomyces l... [more]
A0A1J5WL80_9MICR7.180e-628.21Nuclear movement protein nudC n=1 Tax=Amphiamblys ... [more]
A0A7R9Y333_9VIRI2.360e-534.56Hypothetical protein (Fragment) n=2 Tax=Prasinoder... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1398contigF-serratus_M_contig1398:19269..22667 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue3.5e-12
Seed eggNOG ortholog325452.fgenesh_scip_prom.46568.10660
Preferred nameVDAC2
KEGG rclassRC00588
KEGG koko:K02552,ko:K05862,ko:K13947,ko:K15040,ko:K15041
KEGG TC1.B.8.1,2.A.69.1
KEGG ReactionR01717
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,ko04020,ko04022,ko04216,ko04217,ko04218,ko04621,ko04979,ko05012,ko05016,ko05161,ko05164,ko05166,ko05203,map00130,map01053,map01100,map01110,map01130,map04020,map04022,map04216,map04217,map04218,map04621,map04979,map05012,map05016,map05161,map05164,map05166,map05203
KEGG ModuleM00116
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000070,GO:0000278,GO:0000280,GO:0000819,GO:0001662,GO:0001669,GO:0002209,GO:0003006,GO:0003008,GO:0003674,GO:0005215,GO:0005216,GO:0005244,GO:0005253,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005618,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005757,GO:0005759,GO:0005773,GO:0005774,GO:0005783,GO:0005791,GO:0005794,GO:0005829,GO:0005856,GO:0005886,GO:0006091,GO:0006457,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006820,GO:0006839,GO:0006851,GO:0006863,GO:0006914,GO:0006915,GO:0006928,GO:0006950,GO:0006952,GO:0006996,GO:0007005,GO:0007017,GO:0007018,GO:0007049,GO:0007059,GO:0007097,GO:0007154,GO:0007165,GO:0007267,GO:0007268,GO:0007270,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007291,GO:0007338,GO:0007339,GO:0007349,GO:0007602,GO:0007610,GO:0007611,GO:0007612,GO:0008021,GO:0008037,GO:0008150,GO:0008152,GO:0008219,GO:0008308,GO:0008324,GO:0008509,GO:0009056,GO:0009060,GO:0009266,GO:0009295,GO:0009314,GO:0009409,GO:0009416,GO:0009507,GO:0009526,GO:0009527,GO:0009536,GO:0009566,GO:0009581,GO:0009582,GO:0009583,GO:0009605,GO:0009607,GO:0009617,GO:0009628,GO:0009653,GO:0009719,GO:0009725,GO:0009735,GO:0009888,GO:0009892,GO:0009894,GO:0009941,GO:0009966,GO:0009968,GO:0009987,GO:0009988,GO:0010029,GO:0010033,GO:0010506,GO:0010646,GO:0010648,GO:0010821,GO:0010941,GO:0010970,GO:0012501,GO:0012505,GO:0015075,GO:0015085,GO:0015103,GO:0015267,GO:0015288,GO:0015318,GO:0015698,GO:0015851,GO:0015853,GO:0015931,GO:0015980,GO:0016006,GO:0016020,GO:0016021,GO:0016043,GO:0016236,GO:0019222,GO:0019725,GO:0019867,GO:0019899,GO:0019900,GO:0019901,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022803,GO:0022829,GO:0022832,GO:0022836,GO:0022838,GO:0022839,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023057,GO:0030001,GO:0030133,GO:0030141,GO:0030154,GO:0030312,GO:0030382,GO:0030473,GO:0030705,GO:0030855,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031306,GO:0031307,GO:0031323,GO:0031324,GO:0031329,GO:0031333,GO:0031410,GO:0031505,GO:0031966,GO:0031967,GO:0031968,GO:0031974,GO:0031975,GO:0031981,GO:0031982,GO:0032271,GO:0032272,GO:0032501,GO:0032502,GO:0032504,GO:0032592,GO:0032991,GO:0033043,GO:0033555,GO:0034220,GO:0035036,GO:0042170,GO:0042221,GO:0042592,GO:0042596,GO:0042645,GO:0042742,GO:0042802,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043207,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043254,GO:0044087,GO:0044237,GO:0044248,GO:0044325,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044429,GO:0044434,GO:0044435,GO:0044437,GO:0044444,GO:0044446,GO:0044455,GO:0044456,GO:0044464,GO:0044703,GO:0044877,GO:0045121,GO:0045202,GO:0045229,GO:0045333,GO:0045454,GO:0046873,GO:0046907,GO:0046930,GO:0048232,GO:0048285,GO:0048468,GO:0048515,GO:0048519,GO:0048523,GO:0048580,GO:0048583,GO:0048585,GO:0048609,GO:0048646,GO:0048856,GO:0048869,GO:0050657,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051027,GO:0051082,GO:0051128,GO:0051129,GO:0051179,GO:0051234,GO:0051239,GO:0051276,GO:0051606,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0055114,GO:0060429,GO:0060548,GO:0061919,GO:0065007,GO:0065008,GO:0070013,GO:0070382,GO:0070588,GO:0070838,GO:0071554,GO:0071555,GO:0071702,GO:0071705,GO:0071840,GO:0071852,GO:0071944,GO:0072384,GO:0072511,GO:0097223,GO:0097458,GO:0097708,GO:0098542,GO:0098573,GO:0098588,GO:0098589,GO:0098655,GO:0098656,GO:0098660,GO:0098662,GO:0098793,GO:0098796,GO:0098798,GO:0098805,GO:0098813,GO:0098857,GO:0098916,GO:0099111,GO:0099503,GO:0099536,GO:0099537,GO:0140014,GO:1900140,GO:1902531,GO:1902532,GO:1903047,GO:1903146,GO:1990542,GO:2000026,GO:2000377,GO:2000378,GO:2001233,GO:2001234,GO:2001242,GO:2001243
EggNOG free text desc.Eukaryotic porin
EggNOG OGs3Q849@4776,KOG2265@1,KOG2265@2759,KOG3126@1,KOG3126@2759
EC5.4.4.2
COG Functional cat.P
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03029
Exons4
Model size1895
Cds size1647
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1398.2855.1prot_F-serratus_M_contig1398.2855.1Fucus serratus malepolypeptideF-serratus_M_contig1398 19425..22575 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929376.71614-UTR-F-serratus_M_contig1398:19268..194241622929376.71614-UTR-F-serratus_M_contig1398:19268..19424Fucus serratus maleUTRF-serratus_M_contig1398 19269..19424 +
1690962823.8205402-UTR-F-serratus_M_contig1398:19268..194241690962823.8205402-UTR-F-serratus_M_contig1398:19268..19424Fucus serratus maleUTRF-serratus_M_contig1398 19269..19424 +
1622929376.7940803-UTR-F-serratus_M_contig1398:22575..226671622929376.7940803-UTR-F-serratus_M_contig1398:22575..22667Fucus serratus maleUTRF-serratus_M_contig1398 22576..22667 +
1690962823.8811533-UTR-F-serratus_M_contig1398:22575..226671690962823.8811533-UTR-F-serratus_M_contig1398:22575..22667Fucus serratus maleUTRF-serratus_M_contig1398 22576..22667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929376.7305582-CDS-F-serratus_M_contig1398:19424..200681622929376.7305582-CDS-F-serratus_M_contig1398:19424..20068Fucus serratus maleCDSF-serratus_M_contig1398 19425..20068 +
1690962823.832812-CDS-F-serratus_M_contig1398:19424..200681690962823.832812-CDS-F-serratus_M_contig1398:19424..20068Fucus serratus maleCDSF-serratus_M_contig1398 19425..20068 +
1622929376.7473884-CDS-F-serratus_M_contig1398:20961..213401622929376.7473884-CDS-F-serratus_M_contig1398:20961..21340Fucus serratus maleCDSF-serratus_M_contig1398 20962..21340 +
1690962823.8414156-CDS-F-serratus_M_contig1398:20961..213401690962823.8414156-CDS-F-serratus_M_contig1398:20961..21340Fucus serratus maleCDSF-serratus_M_contig1398 20962..21340 +
1622929376.7669163-CDS-F-serratus_M_contig1398:21650..221241622929376.7669163-CDS-F-serratus_M_contig1398:21650..22124Fucus serratus maleCDSF-serratus_M_contig1398 21651..22124 +
1690962823.8510442-CDS-F-serratus_M_contig1398:21650..221241690962823.8510442-CDS-F-serratus_M_contig1398:21650..22124Fucus serratus maleCDSF-serratus_M_contig1398 21651..22124 +
1622929376.7825902-CDS-F-serratus_M_contig1398:22425..225751622929376.7825902-CDS-F-serratus_M_contig1398:22425..22575Fucus serratus maleCDSF-serratus_M_contig1398 22426..22575 +
1690962823.8617249-CDS-F-serratus_M_contig1398:22425..225751690962823.8617249-CDS-F-serratus_M_contig1398:22425..22575Fucus serratus maleCDSF-serratus_M_contig1398 22426..22575 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1398.2855.1

>prot_F-serratus_M_contig1398.2855.1 ID=prot_F-serratus_M_contig1398.2855.1|Name=mRNA_F-serratus_M_contig1398.2855.1|organism=Fucus serratus male|type=polypeptide|length=549bp
MLANHTAGKNFISDACILYAEALQTLAKVDACIARLPRDDDVATVSQPKI
SKEYQENNAEERAGLSNRADTLRPSLYLNLAACNLLLHEWAAAVACCTQV
LERCGDGIIEAVASAAESSRDGCGSNGQQRAGGKGHHDESNISNGNNTSM
WCREMAAKALYRRSSARDGEGDLGLAREDLSTALKLKPGDANIRRELKKV
EKHLAEKEAKAKLKRETEEGRRRNRLRQEERHASPLSQTKITTTAFPVGD
GSKPSMRSSALAPVSAGKEGPEEPCEHEQDLASRACQAVPQADSNDEQGS
LQDPATPPGEGEGEAQVEPFPTKNGGECRNGLYAWNQSVREVQVSVKVPD
WVRASDVRVDIGRSRLTVAARRAGAGESDTTRKRTQAEPLSSTGREWEEV
VILAGPLSRPVQVDESVWTLETPGSVLLYLQKELPTDGEPGFEWWATVME
GDEEIDVVKCDAGSDASQYPEHARQRGAKALWDYQQMTPEERREEELNEQ
RMREAKRQMAEEVEERERNLANALKDPNKAEMYRKLREVMPDTPISMK*
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mRNA from alignment at F-serratus_M_contig1398:19269..22667+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1398.2855.1 ID=mRNA_F-serratus_M_contig1398.2855.1|Name=mRNA_F-serratus_M_contig1398.2855.1|organism=Fucus serratus male|type=mRNA|length=3399bp|location=Sequence derived from alignment at F-serratus_M_contig1398:19269..22667+ (Fucus serratus male)
TCAGGAATCTTGGAGAGGAAATCAAATACATCTGTTGTCGCCAACAATGA
GTACGGGTTAGTAGAGGATGACCGAAACGAGGAGAGAGCAGCGTCCCTCC
TCGCCACGGTGGAGAGTTTGAAGAATCGGGGAAACGTCGAGTTCCACAAG
GGGAAGATGCTGGCGAACCACACCGCGGGCAAGAACTTCATTTCCGACGC
CTGCATCCTCTACGCGGAAGCGCTACAGACCCTTGCAAAGGTGGACGCTT
GTATCGCGCGACTGCCCAGGGACGATGATGTTGCTACCGTATCTCAGCCA
AAGATCTCGAAAGAATACCAGGAAAACAACGCCGAAGAGAGAGCCGGTCT
CTCCAACCGGGCGGACACGCTCCGCCCGTCGCTATATCTCAACCTCGCCG
CGTGCAATCTCCTTTTGCACGAGTGGGCAGCCGCGGTCGCGTGCTGCACG
CAAGTTCTTGAACGTTGTGGGGACGGAATAATCGAAGCGGTCGCTTCTGC
GGCTGAATCATCCAGAGACGGATGCGGCAGCAACGGGCAGCAGAGGGCGG
GGGGAAAGGGACACCACGACGAATCCAACATCTCTAATGGGAATAACACC
AGCATGTGGTGCAGAGAAATGGCCGCGAAAGCCTTATACCGCAGATCCTC
TGCGCGTGACGGAGAAGGAGACCTTGGGTTGGCACGGGAGGACCTGTCCA
CCGCGCTGAAGCTGAAGCCTGGAGATGCGAACATCCGTCGAGAGCTCAAG
AAGGTCGAGAAACATCTTGCTGAAAAGGAAGCGAAGGCAAAATTGAAACG
GTGGGTGCATTTGTACTGGGTATGGAACGAATTCCACTGCGTTGAAAGTT
GTATAGATCGATCGGTGTGGAAGCAACGATATTATACACAGTATTATACT
GTTGACCCGATGCTACTGGGGACTACTGGCCCTGTGCCAGCGGACGTTCG
GCAGTGAACGCCATTGGTACGCAATTGCTTGACCCGATATACTCGGGTCT
GACCCGATGGCGTATAGCGGCATAAATAAATATTAGCACCATATTCAGAC
AGGATGTGGAGAATGACCGGCTGACGCGGGACGGGAAGGTCGAACCCGTC
TCGCGAGACCAAATTCTCAGGTGCGAACGATGACAGGGAAATATTCATTT
TTCCTCTTCAGCTGACCACGAGCAGGATTTCCAACCTTACCCGGTTGCTA
TAAACTCTCTATGTATGCTGACCATACATACTGCCATTGGGGAACCCAAC
TATATCCCATCAAGAGTTTTTGTCCTTACAGCCTACGTATGTTCCCATGG
ACAAATCCCCCCGCTGATTGGGTGGATACTCTGAAGGTTTATATTTTTTT
CCAACTTGGACCTGTCTCCCTAAGCTGTTGATGTTGAAGCCGAGCCCAAC
ATCGAGAGAGAGTAGTACAAAAAGCGGAATTCCTTTCGACCTGCGTGTGG
AGGTCCCTACGCTGCTGCAACGTAGGCTTATGACCTGACGCGACCCAGGA
AAGTTTTCGCCAGCCCAAGCGCTACCACGTTCTATCTTGGGTTTCCTGCT
GCTATCTTGGCAAATGCATTATAACAGCTCTTTTGTATTAATAAAGTGAC
TTCGAGAGTACAGGCGTTATCTCGCCCACCCACCTGCACCCATCGAACCA
CTGCATACCGTACGCGTAATGCCATCCGCGCGTCGACCAACAGCGAAACA
GAGGAGGGGAGACGAAGAAATCGGCTCAGGCAGGAAGAGAGGCACGCCTC
GCCGCTCTCTCAGACTAAAATCACGACAACCGCGTTTCCTGTCGGCGACG
GCTCAAAACCCTCGATGAGATCCTCAGCGCTCGCCCCGGTGAGCGCTGGT
AAGGAAGGCCCGGAAGAACCCTGCGAGCACGAACAAGACTTGGCATCACG
AGCTTGCCAAGCCGTCCCCCAGGCGGATTCGAACGACGAACAGGGAAGCC
TTCAAGATCCGGCAACGCCGCCAGGGGAGGGAGAGGGTGAAGCACAAGTC
GAGCCTTTCCCAACGAAGAACGGCGGGGAGTGTCGGAACGGCCTTTACGC
CTGGAACCAGTCCGTTCGCGAGGTAAGGAAACCTGCAGCGCGATTGACGA
GCGAGCGCGCTACAGCTACGGTGTTAAACTCTGCTCCAACCCGCCTACTG
AATGCCACCCAGCCATAGACCCTTCAGACTCCGATGCTGACATCGCGGGC
TCCCTAGAGTTGTGATACTGCAATATTGCACCAGGGGCAGCTTGTCGTCC
AAGATATCAATGACGAAACGCGAGAGATTCCGAGACTGCCTCGATATGTA
GCCCGTATATCTTCCTGTCCTTCCTCCACCCTTTTCACAGCAGTCTCCGC
ACTAAATTGTACGCCACGACATTGCACCGCAGGTCCAAGTGTCCGTCAAG
GTGCCCGATTGGGTCCGCGCCAGTGACGTGCGCGTAGACATTGGACGATC
GCGTCTCACAGTGGCGGCGCGTCGAGCGGGCGCCGGAGAGAGCGACACGA
CACGAAAGCGAACGCAGGCCGAGCCTTTGTCGAGTACAGGGAGAGAGTGG
GAGGAGGTCGTTATCCTTGCGGGTCCTCTCAGCCGACCCGTTCAAGTAGA
CGAGAGCGTGTGGACTCTGGAGACGCCCGGCAGTGTCCTCCTTTACCTCC
AGAAAGAGCTTCCTACCGACGGAGAGCCTGGGTTCGAGTGGTGGGCGACC
GTCATGGAGGGCGATGAAGAGATCGACGTGGTCAAGTGCGACGCGGGCTC
GGATGCATCCCAATATCCCGAGCACGCGCGACAACGCGGGGCGAAGGCGC
TGTGGGACTACCAGCAGATGACCCCGGAGGAGCGCCGGGAGGAGGAGCTG
AACGAGGTGCGTCGTTTCAGGCGGTGATTCCACTTGAAATATGATTCCGA
CGCAGCGTGCACTCGATTCGATAATTATTGCGGAATATTCGACAAAGAAA
ACAATTTTCAGCACAGGCTGGAAGGGCGAATAGTTGGTCGGGGACGCTTC
CAAGCCCTGCTGGCAACAGTTATTGTTATTTTAGCGTCTTTTCTGGGTTG
CAGACCTTTTTGAAAATATTGAATGTGCTGCTGTCGACAACGGCTTAATG
GACGACTCTGCCACGATGTCGCTGACGTTTGTTTTTTTCGGTTTCCGTGC
AACTTAGCAACGGATGCGCGAGGCCAAACGCCAGATGGCGGAGGAGGTTG
AGGAACGAGAACGAAATCTGGCAAACGCCCTCAAGGATCCAAACAAGGCA
GAAATGTATCGCAAGCTGCGAGAGGTTATGCCTGACACGCCCATCTCCAT
GAAATAGTATAGTTTGAACGGCTGGAGTCAGGCCGTCTGGGTCCCATTTT
AATCGGAGCGAGATAATTTCGTTGACGCAACGCACGAGGCTCACAGTAT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1398:19269..22667+

>mRNA_F-serratus_M_contig1398.2855.1 ID=mRNA_F-serratus_M_contig1398.2855.1|Name=mRNA_F-serratus_M_contig1398.2855.1|organism=Fucus serratus male|type=CDS|length=3294bp|location=Sequence derived from alignment at F-serratus_M_contig1398:19269..22667+ (Fucus serratus male)
ATGCTGGCGAACCACACCGCGGGCAAGAACTTCATTTCCGACGCCTGCAT
CCTCTACGCGGAAGCGCTACAGACCCTTGCAAAGGTGGACGCTTGTATCG
CGCGACTGCCCAGGGACGATGATGTTGCTACCGTATCTCAGCCAAAGATC
TCGAAAGAATACCAGGAAAACAACGCCGAAGAGAGAGCCGGTCTCTCCAA
CCGGGCGGACACGCTCCGCCCGTCGCTATATCTCAACCTCGCCGCGTGCA
ATCTCCTTTTGCACGAGTGGGCAGCCGCGGTCGCGTGCTGCACGCAAGTT
CTTGAACGTTGTGGGGACGGAATAATCGAAGCGGTCGCTTCTGCGGCTGA
ATCATCCAGAGACGGATGCGGCAGCAACGGGCAGCAGAGGGCGGGGGGAA
AGGGACACCACGACGAATCCAACATCTCTAATGGGAATAACACCAGCATG
TGGTGCAGAGAAATGGCCGCGAAAGCCTTATACCGCAGATCCTCTGCGCG
TGACGGAGAAGGAGACCTTGGGTTGGCACGGGAGGACCTGTCCACCGCGC
TGAAGCTGAAGCCTGGAGATGCGAACATCCGTCGAGAGCTCAAGAAGGTC
GAGAAACATCTTGCTGAAAAGGAAGCGAAGGCAAAATTGAAACGATGCTG
GCGAACCACACCGCGGGCAAGAACTTCATTTCCGACGCCTGCATCCTCTA
CGCGGAAGCGCTACAGACCCTTGCAAAGGTGGACGCTTGTATCGCGCGAC
TGCCCAGGGACGATGATGTTGCTACCGTATCTCAGCCAAAGATCTCGAAA
GAATACCAGGAAAACAACGCCGAAGAGAGAGCCGGTCTCTCCAACCGGGC
GGACACGCTCCGCCCGTCGCTATATCTCAACCTCGCCGCGTGCAATCTCC
TTTTGCACGAGTGGGCAGCCGCGGTCGCGTGCTGCACGCAAGTTCTTGAA
CGTTGTGGGGACGGAATAATCGAAGCGGTCGCTTCTGCGGCTGAATCATC
CAGAGACGGATGCGGCAGCAACGGGCAGCAGAGGGCGGGGGGAAAGGGAC
ACCACGACGAATCCAACATCTCTAATGGGAATAACACCAGCATGTGGTGC
AGAGAAATGGCCGCGAAAGCCTTATACCGCAGATCCTCTGCGCGTGACGG
AGAAGGAGACCTTGGGTTGGCACGGGAGGACCTGTCCACCGCGCTGAAGC
TGAAGCCTGGAGATGCGAACATCCGTCGAGAGCTCAAGAAGGTCGAGAAA
CATCTTGCTGAAAAGGAAGCGAAGGCAAAATTGAAACGCGAAACAGAGGA
GGGGAGACGAAGAAATCGGCTCAGGCAGGAAGAGAGGCACGCCTCGCCGC
TCTCTCAGACTAAAATCACGACAACCGCGTTTCCTGTCGGCGACGGCTCA
AAACCCTCGATGAGATCCTCAGCGCTCGCCCCGGTGAGCGCTGGTAAGGA
AGGCCCGGAAGAACCCTGCGAGCACGAACAAGACTTGGCATCACGAGCTT
GCCAAGCCGTCCCCCAGGCGGATTCGAACGACGAACAGGGAAGCCTTCAA
GATCCGGCAACGCCGCCAGGGGAGGGAGAGGGTGAAGCACAAGTCGAGCC
TTTCCCAACGAAGAACGGCGGGGAGTGTCGGAACGGCCTTTACGCCTGGA
ACCAGTCCGTTCGCGAGCGAAACAGAGGAGGGGAGACGAAGAAATCGGCT
CAGGCAGGAAGAGAGGCACGCCTCGCCGCTCTCTCAGACTAAAATCACGA
CAACCGCGTTTCCTGTCGGCGACGGCTCAAAACCCTCGATGAGATCCTCA
GCGCTCGCCCCGGTGAGCGCTGGTAAGGAAGGCCCGGAAGAACCCTGCGA
GCACGAACAAGACTTGGCATCACGAGCTTGCCAAGCCGTCCCCCAGGCGG
ATTCGAACGACGAACAGGGAAGCCTTCAAGATCCGGCAACGCCGCCAGGG
GAGGGAGAGGGTGAAGCACAAGTCGAGCCTTTCCCAACGAAGAACGGCGG
GGAGTGTCGGAACGGCCTTTACGCCTGGAACCAGTCCGTTCGCGAGGTCC
AAGTGTCCGTCAAGGTGCCCGATTGGGTCCGCGCCAGTGACGTGCGCGTA
GACATTGGACGATCGCGTCTCACAGTGGCGGCGCGTCGAGCGGGCGCCGG
AGAGAGCGACACGACACGAAAGCGAACGCAGGCCGAGCCTTTGTCGAGTA
CAGGGAGAGAGTGGGAGGAGGTCGTTATCCTTGCGGGTCCTCTCAGCCGA
CCCGTTCAAGTAGACGAGAGCGTGTGGACTCTGGAGACGCCCGGCAGTGT
CCTCCTTTACCTCCAGAAAGAGCTTCCTACCGACGGAGAGCCTGGGTTCG
AGTGGTGGGCGACCGTCATGGAGGGCGATGAAGAGATCGACGTGGTCAAG
TGCGACGCGGGCTCGGATGCATCCCAATATCCCGAGCACGCGCGACAACG
CGGGGCGAAGGCGCTGTGGGACTACCAGCAGATGACCCCGGAGGAGCGCC
GGGAGGAGGAGCTGAACGAGGTCCAAGTGTCCGTCAAGGTGCCCGATTGG
GTCCGCGCCAGTGACGTGCGCGTAGACATTGGACGATCGCGTCTCACAGT
GGCGGCGCGTCGAGCGGGCGCCGGAGAGAGCGACACGACACGAAAGCGAA
CGCAGGCCGAGCCTTTGTCGAGTACAGGGAGAGAGTGGGAGGAGGTCGTT
ATCCTTGCGGGTCCTCTCAGCCGACCCGTTCAAGTAGACGAGAGCGTGTG
GACTCTGGAGACGCCCGGCAGTGTCCTCCTTTACCTCCAGAAAGAGCTTC
CTACCGACGGAGAGCCTGGGTTCGAGTGGTGGGCGACCGTCATGGAGGGC
GATGAAGAGATCGACGTGGTCAAGTGCGACGCGGGCTCGGATGCATCCCA
ATATCCCGAGCACGCGCGACAACGCGGGGCGAAGGCGCTGTGGGACTACC
AGCAGATGACCCCGGAGGAGCGCCGGGAGGAGGAGCTGAACGAGCAACGG
ATGCGCGAGGCCAAACGCCAGATGGCGGAGGAGGTTGAGGAACGAGAACG
AAATCTGGCAAACGCCCTCAAGGATCCAAACAAGGCAGAAATGTATCGCA
AGCTGCGAGAGGTTATGCCTGACACGCCCATCTCCATGAAATAGCAACGG
ATGCGCGAGGCCAAACGCCAGATGGCGGAGGAGGTTGAGGAACGAGAACG
AAATCTGGCAAACGCCCTCAAGGATCCAAACAAGGCAGAAATGTATCGCA
AGCTGCGAGAGGTTATGCCTGACACGCCCATCTCCATGAAATAG
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