mRNA_F-serratus_M_contig1394.2842.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1394.2842.1 vs. uniprot
Match: D8LCE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCE7_ECTSI) HSP 1 Score: 341 bits (875), Expect = 7.620e-107 Identity = 198/444 (44.59%), Postives = 269/444 (60.59%), Query Frame = 3
Query: 114 TSPMRHVASMGLLFLFCAGVLASAA-GIKHRPQSHHEQRNMDGDPKLVVLGDSLSDQGRRFEAPASFKFEGIGVYPFEEIYKANDTEEMVEAFSRGSTTGSVTNGKAWTGWLGVDEDLNFATASASFSDTFRSVETCTGYTGEGEEFPTGTLEEQIDRYVHEVVNKTFATLGHVHIIVLGANDVLNLMGAYIRYIIGQTLEDSGAFGGEAYEDP-VPYEKVFELVDSVPQLTTGP-LITEVVTALTNGVARLLEAGVTGEIFVGNVLSTRGLPYFNESGLTDIMEPIIVTVNDEIFAVVKENA-QLSLLDFYTLFGSIVDDPETWTELGFVAPEDEESGETLPLGTQCFETDFTVDSIAEIMGTQAFRSTECQEECALCADETTPCQACYVGNPSGTVCDSPDTRIIWDVVHPTTATYRFLSDAIEECVGEKPNYNRPLVDKLC 1433
TS M ++ LL L G A G RP + + R +PK+VV GDS SD GRR+ APAS+ FEGIGVYP+ ++Y+A D+E AF G+ GS+TNGK W WL V ++LNFATA+AS ++TFR+ E C GYTGEGE+ PTGTL+EQI RY ++ T + HII +G D+ + A RY IG GE Y DP VP++ +F++ D +T +I E+ + +G+ARL++AGVTG I +GN+ + GL + + L +I+ I +T+ E AV E Q+ +LD YTLF +IVD PE + LGFVAPE L C + DF VD + E+ GTQA R CQEECALCAD T+PC C+ GNPSG VC PD+R+ W + +TA + L +AI +C + PNY+RP+V +LC
Sbjct: 6 TSSMGIAPAVALLALALQGAAAQEEDGRSTRPLPYKKWRT---NPKMVVFGDSQSDTGRRYNAPASYVFEGIGVYPWPKLYEAPDSESKFRAFLPGA--GSMTNGKMWPEWLNVPQELNFATATASATETFRTRENCEGYTGEGEDLPTGTLDEQITRYFNDA--DLHETADYTHIIYIGNEDLNSHSAATARYSIG----------GEGYVDPYVPFDMLFDVADDGTVTSTHVHIIAELAESWRSGIARLIDAGVTGTILLGNIGNPEGLSSYIGTPLGEIVRSIALTIRAEAQAVADEFPDQVRILDNYTLFSAIVDTPEIFENLGFVAPEGSF------LSDPCLDLDFAVDYLGEVAGTQALRPVGCQEECALCADNTSPCGTCFEGNPSGQVCSDPDSRLFWGSRYFSTAFHHILGEAIRQCSKDSPNYDRPVVLELC 426
BLAST of mRNA_F-serratus_M_contig1394.2842.1 vs. uniprot
Match: D7FJN5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJN5_ECTSI) HSP 1 Score: 342 bits (877), Expect = 1.430e-106 Identity = 193/445 (43.37%), Postives = 265/445 (59.55%), Query Frame = 3
Query: 144 GLLFLFCAGVLASAAGIKHRPQSHHEQRNMDGDPKLVVLGDSLSDQGRRFEAPASF--KFEGIGVYPFEEIYKANDTEEMVEAFSRGSTTGSVTNGKAWTGWLGVDEDLNFATASASFSDTFRSVETCTGYTGEGEEFPTGTLEEQIDRYVHEVVNKTFATLGHVHIIVLGANDVLNLMGAYIRYIIGQTLEDSGAFGGEAYEDPVPYEKVFEL----------VDSVPQLTTGPLITEVVTALTNGVARLLEAGVTGEIFVGNVLSTRGLPYFNESGLTDIMEPII--VTVNDEIFAVVKENAQLSLLDFYTLFGSIVDDPETWTELGFVAPEDEESGETLPLGTQCFETDFTVDSIAEIMGTQAFRSTECQEECALCADETTPCQACYVGNPSGTVCDSPDTRIIWDVVHPTTATYRFLSDAIEECVGEKPNYNRPLVDKLCP 1436
GL+ L A A A+G+ RP + R + PK+VV GDS SD GRR+ AP SF K +GIG +P++ +Y D++E A+ GSV+NGKAW WL + ++ NFAT+SAS +D FRS E CTGYTGEGE+FPT TLEEQIDRY +E+VN+T TL + H+I +G N++ ++ A RY + GGE YEDPV +EKVFE+ +P T P+I EV+ A G+ RL+ AGVTG I + NV S +GL + +++ + + V ++ V K + Q+ +LD YTLF ++VDD +T+LGF GE L C + +F VD AEIMGTQA R+ +CQEEC LCAD TTPC C V P+ T CD P ++ +D VH TT + +AI +C + PN++RP V +CP
Sbjct: 9 GLVLLGAAS--ARASGVATRPNKFKKWR-FENPPKMVVFGDSNSDTGRRYNAPNSFQLKEDGIGAFPWKRLYDGPDSDEKTSAYM--PFEGSVSNGKAWPTWLRIPDEHNFATSSASATDAFRSRERCTGYTGEGEDFPTATLEEQIDRYFYEIVNETDETLDYTHVIFIGTNELNRVVEAITRY----------STGGEGYEDPVAFEKVFEVDATTGFPVFDASGLPVPTFAPMIEEVLGAWDEGIGRLIGAGVTGRILLANVGSPKGLTGIAGTETAILLDSVAQALRVGAQLL-VAKYSHQVRMLDLYTLFAALVDDESIFTDLGFTP------GEGSLLADSCIQVNFFVDDAAEIMGTQALRNPDCQEECTLCADSTTPCATCLVDQPAITKCDDPSNKVFYDGVHFTTDFHLIFGEAIRQCSKDSPNFDRPFVGVMCP 431
BLAST of mRNA_F-serratus_M_contig1394.2842.1 vs. uniprot
Match: D7FJN0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJN0_ECTSI) HSP 1 Score: 336 bits (861), Expect = 1.420e-104 Identity = 185/439 (42.14%), Postives = 260/439 (59.23%), Query Frame = 3
Query: 171 VLASAAGIKHRPQSHHEQRNMDGDPKLVVLGDSLSDQGRRFEAPASFKFE--GIGVYPFEEIYKANDTEEMVEAFSRGSTTGSVTNGKAWTGWLGVDEDLNFATASASFSDTFRSVETCTGYTGEGEEFPTGTLEEQIDRYVHEVVNKTFAT----LGHVHIIVLGANDVLNLMGAYIRYIIGQTLEDSGAFGGEAYEDPVPYEKVFEL----------VDSVPQLTTGPLITEVVTALTNGVARLLEAGVTGEIFVGNVLSTRGLPYFNESGLTDIMEPIIVTVNDEI-FAVVKENAQLSLLDFYTLFGSIVDDPETWTELGFVAPEDEESGETLPLGTQCFETDFTVDSIAEIMGTQAFRSTECQEECALCADETTPCQACYVGNPSGTVCDSPDTRIIWDVVHPTTATYRFLSDAIEECVGEKPNYNRPLVDKLCP 1436
VL+SAA + + ++ + PK+VV GDS +D GRRF APASF+FE GIG +P++ +Y D++E A+ GSV+NGKAW WL + ++ NFAT+S S +D FRS E CTGYTGEGE+FPT TLEEQIDRY +E+V+ T L + H+I +G N++ ++ A RY IG GE YEDPV ++KVFE+ +P T P+I EV+ A G+ RL++AGVTG I + NV S +GL + +++ + + + V K Q+ +LD YTLF ++VDD +T+LGF GE L C + +F VD AEIMGTQA R+ +CQEEC LCAD TTPC C+V P+ T CD P +++ +D +H TT + +AI +C + PN++RP V +CP
Sbjct: 19 VLSSAASAEVTRPNEFKKWRFENPPKMVVFGDSNADTGRRFNAPASFQFEDEGIGPFPWKRLYDGPDSDEKTAAYM--PFEGSVSNGKAWPTWLRIPDEHNFATSSGSATDAFRSRERCTGYTGEGEDFPTATLEEQIDRYFYEIVDDASTTKDETLDYTHVIFIGTNELNRVVEAITRYSIG----------GEGYEDPVAFDKVFEVNATTGFPVLDESGLPVPTFAPMIEEVLGAWDEGIGRLIDAGVTGRILLANVGSPKGLAGIAGTETATVLDQVALFLRSGAELLVAKYAGQVRMLDMYTLFAALVDDESLFTDLGFTP------GEGSLLADSCIQFNFFVDDAAEIMGTQALRNPDCQEECMLCADSTTPCATCFVDQPAITKCDDPSSKVFYDGIHFTTDFHLIFGEAIRQCSKDSPNFDRPFVGVMCP 439
BLAST of mRNA_F-serratus_M_contig1394.2842.1 vs. uniprot
Match: D7FYC5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYC5_ECTSI) HSP 1 Score: 333 bits (854), Expect = 1.360e-103 Identity = 188/429 (43.82%), Postives = 256/429 (59.67%), Query Frame = 3
Query: 201 RPQSHHEQRNMDGDPKLVVLGDSLSDQGRRFEAPASFKFE--GIGVYPFEEIYKANDTEEMVEAFSRGSTTGSVTNGKAWTGWLGVDEDLNFATASASFSDTFRSVETCTGYTGEGEEFPTGTLEEQIDRYVHEVVNKTFAT----LGHVHIIVLGANDVLNLMGAYIRYIIGQTLEDSGAFGGEAYEDPVPYEKVFEL----------VDSVPQLTTGPLITEVVTALTNGVARLLEAGVTGEIFVGNVLSTRGLPYFNESGLTDIMEPIIVTVNDEIFAVVKENA-QLSLLDFYTLFGSIVDDPETWTELGFVAPEDEESGETLPLGTQCFETDFTVDSIAEIMGTQAFRSTECQEECALCADETTPCQACYVGNPSGTVCDSPDTRIIWDVVHPTTATYRFLSDAIEECVGEKPNYNRPLVDKLCP 1436
RP + R + P++VVLGDS SD GRRF PASF+FE GIG +P++ +Y D++E A+ GSVTNGK W WL + ++ NFAT+SA+ +D FRS E CTGYTGEGE+FPT TLEEQIDRY +E+V+ T T L + H+I +G N+++ A RY IG GE Y+DPV ++KVFE+ + +P T P+I EV+ A G+ARL+ AGVTG I + NV S +GL + +++ I + + +V + A Q+ +LD YTLF ++VDD + +LGF GE L C + +F VD AEIMGTQA R+ +CQEECALCAD TTPC C V P+ T CD P T+I +D +H TT + L +AI +C + PN++R V LCP
Sbjct: 24 RPNEFKKWR-FENPPQMVVLGDSNSDTGRRFNTPASFQFEDEGIGPFPWKRVYDGPDSDEKTAAYM--PFEGSVTNGKVWPTWLRIPDEHNFATSSATATDAFRSRERCTGYTGEGEDFPTATLEEQIDRYFYEIVDDTSTTTNDTLDYTHVIFIGINELIMAAAAVTRYSIG----------GEGYQDPVAFDKVFEVNATTGLPVLDENGLPVPTFTPMIEEVLGAWDEGIARLIGAGVTGRILLANVGSLKGLDGIAGTETATVLDQITLVLRSGAELLVDKYAGQVRMLDMYTLFAALVDDESIFLDLGFTP------GEGSLLAETCIQFNFVVDDAAEIMGTQALRNPDCQEECALCADSTTPCATCLVDQPAVTKCDDPSTKIFYDSIHFTTDFHLVLGEAIRQCSKDSPNFDRAFVGVLCP 433
BLAST of mRNA_F-serratus_M_contig1394.2842.1 vs. uniprot
Match: A0A6H5KTW7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW7_9PHAE) HSP 1 Score: 93.6 bits (231), Expect = 1.630e-17 Identity = 75/241 (31.12%), Postives = 109/241 (45.23%), Query Frame = 3
Query: 249 LVVLGDSLSDQGRRFEAPASFKF--EGIGVYPFEEIYKA--NDTEEMVEAFSRGST-TGSVTNGKAWTGWLGVDEDLNFATASASFSDTFRSVETCTGYTGEGEEFPTGTLEEQIDRYVHEVVNKTFATLG--HVHIIVLGANDVLNLMGAYIRYIIGQTLEDSGAFGGEAYEDPVPYEKVFEL----------VDSVPQLTTGPLITEVVTALTNGVARLLEAGVTGEIFVGNVLSTRGL 920
+VV GDS SD G RF P+SF+F +GIG +P++ +Y D + VE S S +NG AW WL + + A +T V C K TL + H+ +GAN++ ++ A RY + GG++Y+DPV +EKVFE+ S+P T P+I EV+ A + RL+ AG+TG I + NV S +GL
Sbjct: 1 MVVFGDSNSDTGSRFNTPSSFQFKDDGIGAFPWKRLYDGPDRDVSDCVEKTSAYMPFDNSASNGIAWPTWLRIPD-----VGGAPLVETLFFVACC----------------------------KLLFTLAVDYTHVAFIGANEMNRVIEAITRY----------STGGQSYQDPVAFEKVFEVDATTGFPVLHESSLPVPTFAPIIEEVLGAWDEVIGRLIGAGITGRIHLANVGSPKGL 198 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1394.2842.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1394.2842.1 >prot_F-serratus_M_contig1394.2842.1 ID=prot_F-serratus_M_contig1394.2842.1|Name=mRNA_F-serratus_M_contig1394.2842.1|organism=Fucus serratus male|type=polypeptide|length=444bp MRHVASMGLLFLFCAGVLASAAGIKHRPQSHHEQRNMDGDPKLVVLGDSLback to top mRNA from alignment at F-serratus_M_contig1394:142391..171402- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1394.2842.1 ID=mRNA_F-serratus_M_contig1394.2842.1|Name=mRNA_F-serratus_M_contig1394.2842.1|organism=Fucus serratus male|type=mRNA|length=29012bp|location=Sequence derived from alignment at F-serratus_M_contig1394:142391..171402- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1394:142391..171402- >mRNA_F-serratus_M_contig1394.2842.1 ID=mRNA_F-serratus_M_contig1394.2842.1|Name=mRNA_F-serratus_M_contig1394.2842.1|organism=Fucus serratus male|type=CDS|length=2664bp|location=Sequence derived from alignment at F-serratus_M_contig1394:142391..171402- (Fucus serratus male)back to top |