mRNA_F-serratus_M_contig1393.2838.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1393.2838.1
Unique NamemRNA_F-serratus_M_contig1393.2838.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1393.2838.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1393contigF-serratus_M_contig1393:157804..161796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1223
Cds size1059
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1393.2838.1prot_F-serratus_M_contig1393.2838.1Fucus serratus malepolypeptideF-serratus_M_contig1393 157804..161634 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929372.840724-CDS-F-serratus_M_contig1393:157803..1585541622929372.840724-CDS-F-serratus_M_contig1393:157803..158554Fucus serratus maleCDSF-serratus_M_contig1393 157804..158554 -
1690962821.7280023-CDS-F-serratus_M_contig1393:157803..1585541690962821.7280023-CDS-F-serratus_M_contig1393:157803..158554Fucus serratus maleCDSF-serratus_M_contig1393 157804..158554 -
1622929372.860152-CDS-F-serratus_M_contig1393:160835..1609661622929372.860152-CDS-F-serratus_M_contig1393:160835..160966Fucus serratus maleCDSF-serratus_M_contig1393 160836..160966 -
1690962821.7368248-CDS-F-serratus_M_contig1393:160835..1609661690962821.7368248-CDS-F-serratus_M_contig1393:160835..160966Fucus serratus maleCDSF-serratus_M_contig1393 160836..160966 -
1622929372.8786407-CDS-F-serratus_M_contig1393:161457..1616341622929372.8786407-CDS-F-serratus_M_contig1393:161457..161634Fucus serratus maleCDSF-serratus_M_contig1393 161458..161634 -
1690962821.748708-CDS-F-serratus_M_contig1393:161457..1616341690962821.748708-CDS-F-serratus_M_contig1393:161457..161634Fucus serratus maleCDSF-serratus_M_contig1393 161458..161634 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929372.8948395-UTR-F-serratus_M_contig1393:161634..1617961622929372.8948395-UTR-F-serratus_M_contig1393:161634..161796Fucus serratus maleUTRF-serratus_M_contig1393 161635..161796 -
1690962821.7569888-UTR-F-serratus_M_contig1393:161634..1617961690962821.7569888-UTR-F-serratus_M_contig1393:161634..161796Fucus serratus maleUTRF-serratus_M_contig1393 161635..161796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1393.2838.1

>prot_F-serratus_M_contig1393.2838.1 ID=prot_F-serratus_M_contig1393.2838.1|Name=mRNA_F-serratus_M_contig1393.2838.1|organism=Fucus serratus male|type=polypeptide|length=353bp
MVTTVEFKESSTSPRRWLGFMKCGSVHGLPFLSSPMPPVPQDLPRDQGKG
NHGVNCREEAVTSTRSDIHAASSRPRSAVGVRDSRPSRTPLQRPSSAYPR
LERGCRAPLLSNNGQLQFDPHRGSPRGIPLFPPESKLAGRPRSLLFGPPH
CPSCGFHPRGSLPRGPLGPRGLPPRAFMAPHKSFASTGMSPVPGMGLIAR
VPRPPPGPAMGLISRGPCFLPRYDFGMPPRGSKLPPRPVAGRTSRWSRSP
PPGLTREPRGPIHLGPGRRPRPGGQFVMDPRRSMVGRGRGPPPWSIRMVG
PRGGLQRPHPEEPSPKPDTPTAAPPWMSNLRVDDDFAQPEPEPVSMSKLH
ENS
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mRNA from alignment at F-serratus_M_contig1393:157804..161796-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1393.2838.1 ID=mRNA_F-serratus_M_contig1393.2838.1|Name=mRNA_F-serratus_M_contig1393.2838.1|organism=Fucus serratus male|type=mRNA|length=3993bp|location=Sequence derived from alignment at F-serratus_M_contig1393:157804..161796- (Fucus serratus male)
GTTTTGCAGCGGAGGGAAAGCGAGCCTTATTAGGTGGCGAACCGTCTTTT
TGTAGGTGCAACAAGAAATAAACATCTCGCGATGGATACTCTTCTTTTTT
CTCGTTGACGGTTGTAGCGTTTCGAGAAGATCTTCCAAGCGATCGCGTCG
TACTGCACCACAATGGTTACGACTGTCGAATTCAAGGAGTCGTCGACTTC
GCCAAGGAGATGGCTGGGCTTCATGAAGTGTGGGTCGGTCCACGGGTTGC
CTTTTTTGTCCAGTCCGATGCCACCAGTTCCGCAGGATTTGCCAAGAGAT
CAAGGGAAAGGAAACCACGGCGTGAATTGTCGCGAGGAGGTAAATTATCG
ATGTGCTTCTCGGGAGCAGGGTGGGTGAAATATAATCCTGGAAGGTAACC
GCCAGGTCCAGCACTGCATCGGACGGGGGGCTCAATATAGTATCAAACTT
CCAGCGATTCCTATTTTTAGCGAGCTCTTATACAAGCATCGCTTCGACGA
ACTTTGTGGCGAGTAAATGCGTGGGGTAAAAAAACAACATAAAAGTACAT
TTTCAGGGACACCAATGTCACGATTCGGTGTACTCGTACTACCCCTCTCT
GTATTCAGCGTACAACACATCGTAGTTCCCCAAACTTTTTTTTTCTTTTC
CAACCTCAACAATGTAAGAACGCAATGGAACATGTATAATAGTGGAGATC
TGCGAGGAGGTATTCATACGTAGTCTGATCATACCCGTGTAAAGCTAGAG
CGAGAGCCTTGCTCAGAGGAAGGTTATGAAGTGAATATACTATTCGTCCA
GAAAATAATGCACCGTGACGCGAACTACAGGCGGTTACAAGCACTCGTAG
TGATATACACGCGGCGAGTTCACGCCCAAGATCGGCGGTTGGTGTTAGGG
ATTCTCGACCTTCCAGAACTCCGCTACAGCGTCCGAGCTCGGCTTACCCA
AGACTGGAAAGGTACTACATTGTATAGCAGTATGGATAGTGTAGCAGTGT
GTGGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATTAAATTGCACATAAC
CACGCAATCCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCATTGAT
CCTCCCGAGGGGGGATCAATGATACTTATTACGAAAACCGTGTATGTGTA
TTTTCTTCCCATTTATTCTGGATGTCAAGTTCGTTGGAGGTACCAGCCGG
GGTCACACAGGAGGAAGGCCAAACATGATTTCTCATCCACCTTCCTTCTG
CGGTGCATGCCTGTATTTTAAATCTCGCGAGAAGGATTCAGTCGTTCCTT
TCCCTCGTCGACCGCGGAGTCGAATTTTGCACGGGTGTGTTCTGTAGGGT
ACTCACAGACCTGTACCGGGGGTAATTACCCTCTGTAATTACCCTACAGA
ATAGTTCTGTGGGTTCTGTAGCACCCTCGTACAATACAGAATAGTTCTGT
GAGGTTCTGTGGCACCCTCGCACAATACAGAATAGTTCTGTGAGTTCTGT
GACACCCCCGGTACCCTACAGAATAGTTCTGTGAGTTCTGTGACACCGCC
GGTACCCTACAGAATAGTTCTGTAGCACCCTCGCACAATACAGAATAGTT
CTGTGAGGTTCTGTAGCACTCTCGTACAATACAGAATAGTTCTGTGAGGT
TCTGTGGCACCCTCGCACAATACAGAATAGTTCTGTGAGGTTCTGTAGCA
CCCTCGCACAATACAGAATAGTTCTGTGAGGTTCTGTAGCACCCTCGCAC
AATACAGAATAGTTCTGTGACGGTCAGTCACAATACAGAATAGTTCTGTG
AGGTTCTGTAAAATGCCCCCGCGTGACGTCAGGTCCGCGAACAAAGCGGG
AAGTTGTACACAGACAGACCCAGACAGCAGCCACACACACAATACACAAC
ACACACCAGACCCACAGAAGATCGTTTGTGCGAACCTCGAGAGGGAACAT
GAGCGCTGTTGTTGCGGACCTCGACAACTCCTCCACGCCGCAAGACACAA
ACACAAACACGAATGCCGGGGCGGGTGAAGGTGGCGGGGTTGAGACAAAC
GAAGGCACACCCGAGAGCAATGAGCAGCATGGCTCGAATGTGGTAGACGT
TGCCGGAACCAGCGCTGGAGGCGTGCCCGTACTCAGCCCGAAACCAGTCT
ACGGCAAGGGCGGAGTGGTAGCGGAGGTGGCTAATTTCAGTGCTGGGTAC
GATTTCTATTTTGTTCAATGCTATAGCGCCCTTGCCTCTCTTCCTGTACC
TTCGTCGTAAACACGCACGTCGTCAAACTCGTCATGTTCTGTAGGGTAAT
TCACGGGTACCGCGTAAGTACCGGGGGCTCTTCTGTAGACACAGAGTTCT
GTAACACCCCCTGTACCCTACAGAATATCTCTGTGCCGCCCCCTGTATCC
TACAGAATAGTTCTGTAACACCCTCGCACAATACAGAATAGTTCTGTAGC
ACCCTCGCATAATACAGAATAGTTCTGTGGGTTCTGTAGCACCCTCGTAC
AATACAGAATAGTTCTGTGGGTTCTGTAGCACCCTCGTACAACACAGAAT
AGTTCTGTGAGGTTCTGTAGCACCCTCGCACAATACAGAATAGTTCTGTG
AGTTCTGTGACACCCTCGGTACCCTACAGAATAGTTCTGTGAGTTCTGTG
ACACCGCCGGTACCCTACAGAATAGTTCTGTAACACTCTCGCACAATACA
GAATAGTTCTGTGAGGTTCTGTAGCACTCTCGCACAATACAGAATAGTTC
TGTGAGGTTCTGTAACACCCTCGCGCAATACAGAATAGTTCTGTGAGTTC
TGTGACACCCCCGGTACCCTACAGAGAGTACCTGTACCCTACAGAACACA
CCCGTGGAATTTTGTGTACTAACGGTTAATCGTTCTCCACTTGTTGGGCA
TTTCTGTTACTCTTTTTCATATATTTTGTTAGCGAGGAAAAATCCCAGTT
ACCGGGATTCGATATCACCTCCCAAAGCGTCAGAAGGTTACGAGGTTACC
AATTGAGCTACCGGGGCGACCGGCTTATACAGTAGTTATTCGAGGGTAAA
CTGTAGAAGTCTCCTGATTGTGTGAAAAAGCGTCGAAGGTCTCAAGCGAA
AGTGACTGGAATAATTCTGCGCCTGGCTTTCATCGTTTCGAACGATCCCG
AGACGTGGAGACTAACATGTTAGAAGCGTTATTGTAGCAGACGCTACTAA
CCAGTGCCGGTTAACCCTTATATTGACACTTGCGATAAACAGAGGGTGTC
GAGCACCTTTGCTGTCAAATAACGGACAGCTGCAATTTGATCCTCACAGA
GGATCGCCCAGGGGAATTCCGTTGTTTCCGCCCGAGTCAAAGCTTGCGGG
GAGACCAAGATCACTATTATTTGGGCCTCCCCACTGCCCCTCATGTGGAT
TTCACCCACGGGGTAGCCTACCACGAGGGCCGCTAGGCCCCAGAGGTTTA
CCTCCCCGAGCTTTCATGGCTCCACACAAATCATTTGCGAGTACAGGGAT
GTCACCTGTGCCTGGCATGGGTCTAATAGCAAGAGTGCCACGTCCTCCAC
CTGGACCTGCCATGGGATTGATTTCGAGAGGACCGTGTTTTCTGCCAAGA
TATGACTTTGGGATGCCACCAAGAGGGTCAAAGCTGCCACCTAGACCTGT
CGCTGGGAGGACGTCAAGATGGTCGAGGTCGCCGCCACCCGGCTTAACTA
GAGAACCACGCGGACCAATTCATCTTGGACCAGGTAGAAGACCACGACCT
GGTGGGCAGTTTGTCATGGATCCGAGGAGATCGATGGTGGGCAGGGGTAG
AGGACCTCCACCATGGTCAATAAGAATGGTCGGGCCGCGAGGTGGACTGC
AGCGACCGCATCCCGAAGAGCCGAGTCCTAAACCCGATACGCCTACAGCA
GCCCCTCCTTGGATGAGTAACCTTCGAGTTGATGACGACTTTGCGCAGCC
GGAGCCGGAGCCGGTGTCGATGTCTAAGTTACATGAAAATAGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1393:157804..161796-

>mRNA_F-serratus_M_contig1393.2838.1 ID=mRNA_F-serratus_M_contig1393.2838.1|Name=mRNA_F-serratus_M_contig1393.2838.1|organism=Fucus serratus male|type=CDS|length=2118bp|location=Sequence derived from alignment at F-serratus_M_contig1393:157804..161796- (Fucus serratus male)
ATGGTTACGACTGTCGAATTCAAGGAGTCGTCGACTTCGCCAAGGAGATG
GCTGGGCTTCATGAAGTGTGGGTCGGTCCACGGGTTGCCTTTTTTGTCCA
GTCCGATGCCACCAGTTCCGCAGGATTTGCCAAGAGATCAAGGGAAAGGA
AACCACGGCGTGAATTGTCGCGAGGAGATGGTTACGACTGTCGAATTCAA
GGAGTCGTCGACTTCGCCAAGGAGATGGCTGGGCTTCATGAAGTGTGGGT
CGGTCCACGGGTTGCCTTTTTTGTCCAGTCCGATGCCACCAGTTCCGCAG
GATTTGCCAAGAGATCAAGGGAAAGGAAACCACGGCGTGAATTGTCGCGA
GGAGGCGGTTACAAGCACTCGTAGTGATATACACGCGGCGAGTTCACGCC
CAAGATCGGCGGTTGGTGTTAGGGATTCTCGACCTTCCAGAACTCCGCTA
CAGCGTCCGAGCTCGGCTTACCCAAGACTGGAAAGGCGGTTACAAGCACT
CGTAGTGATATACACGCGGCGAGTTCACGCCCAAGATCGGCGGTTGGTGT
TAGGGATTCTCGACCTTCCAGAACTCCGCTACAGCGTCCGAGCTCGGCTT
ACCCAAGACTGGAAAGAGGGTGTCGAGCACCTTTGCTGTCAAATAACGGA
CAGCTGCAATTTGATCCTCACAGAGGATCGCCCAGGGGAATTCCGTTGTT
TCCGCCCGAGTCAAAGCTTGCGGGGAGACCAAGATCACTATTATTTGGGC
CTCCCCACTGCCCCTCATGTGGATTTCACCCACGGGGTAGCCTACCACGA
GGGCCGCTAGGCCCCAGAGGTTTACCTCCCCGAGCTTTCATGGCTCCACA
CAAATCATTTGCGAGTACAGGGATGTCACCTGTGCCTGGCATGGGTCTAA
TAGCAAGAGTGCCACGTCCTCCACCTGGACCTGCCATGGGATTGATTTCG
AGAGGACCGTGTTTTCTGCCAAGATATGACTTTGGGATGCCACCAAGAGG
GTCAAAGCTGCCACCTAGACCTGTCGCTGGGAGGACGTCAAGATGGTCGA
GGTCGCCGCCACCCGGCTTAACTAGAGAACCACGCGGACCAATTCATCTT
GGACCAGGTAGAAGACCACGACCTGGTGGGCAGTTTGTCATGGATCCGAG
GAGATCGATGGTGGGCAGGGGTAGAGGACCTCCACCATGGTCAATAAGAA
TGGTCGGGCCGCGAGGTGGACTGCAGCGACCGCATCCCGAAGAGCCGAGT
CCTAAACCCGATACGCCTACAGCAGCCCCTCCTTGGATGAGTAACCTTCG
AGTTGATGACGACTTTGCGCAGCCGGAGCCGGAGCCGGTGTCGATGTCTA
AGTTACATGAAAATAGCAGGGTGTCGAGCACCTTTGCTGTCAAATAACGG
ACAGCTGCAATTTGATCCTCACAGAGGATCGCCCAGGGGAATTCCGTTGT
TTCCGCCCGAGTCAAAGCTTGCGGGGAGACCAAGATCACTATTATTTGGG
CCTCCCCACTGCCCCTCATGTGGATTTCACCCACGGGGTAGCCTACCACG
AGGGCCGCTAGGCCCCAGAGGTTTACCTCCCCGAGCTTTCATGGCTCCAC
ACAAATCATTTGCGAGTACAGGGATGTCACCTGTGCCTGGCATGGGTCTA
ATAGCAAGAGTGCCACGTCCTCCACCTGGACCTGCCATGGGATTGATTTC
GAGAGGACCGTGTTTTCTGCCAAGATATGACTTTGGGATGCCACCAAGAG
GGTCAAAGCTGCCACCTAGACCTGTCGCTGGGAGGACGTCAAGATGGTCG
AGGTCGCCGCCACCCGGCTTAACTAGAGAACCACGCGGACCAATTCATCT
TGGACCAGGTAGAAGACCACGACCTGGTGGGCAGTTTGTCATGGATCCGA
GGAGATCGATGGTGGGCAGGGGTAGAGGACCTCCACCATGGTCAATAAGA
ATGGTCGGGCCGCGAGGTGGACTGCAGCGACCGCATCCCGAAGAGCCGAG
TCCTAAACCCGATACGCCTACAGCAGCCCCTCCTTGGATGAGTAACCTTC
GAGTTGATGACGACTTTGCGCAGCCGGAGCCGGAGCCGGTGTCGATGTCT
AAGTTACATGAAAATAGC
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