mRNA_F-serratus_M_contig1393.2837.1 (mRNA) Fucus serratus male
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Overview
Homology
BLAST of mRNA_F-serratus_M_contig1393.2837.1 vs. uniprot
Match: D7FJS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJS0_ECTSI) HSP 1 Score: 342 bits (877), Expect = 3.280e-90 Identity = 509/1689 (30.14%), Postives = 664/1689 (39.31%), Query Frame = 2
Query: 2783 SSEKQQAQQPALPDWLTAAAGGPFPKEVFDGARDGTAENLVEGITTHRDDSEAVA--DEREGGLGWLKTVVASDKKVAAVMIHKSVDESKSTQGVATSTDWLSQAAMSAADADGGHGGETKNLVRRRNSLVT------TGGWIST-KLGLPVDEEYALDEKGGSDVRQTAIASETTKKRSLGIAVSDDKGPVAQPAGWLSTAMSSGKLGVAADDIDXXXXXGQTEEDR-----------RSLKMVTSGTQWEDGETEDSTQAPASTLPPWAAKWTPSFPSPPPEVEEEPTVESETKPKPSGLDWIKNEMPCTPAETSKGASAGGDQVIANGCGSTIGDSSGLDWLKEVSAPGGVSLHDTVASPRNSHGAVLSRSVGDGNVTSPTAGA--AVSGSGVDWLVVVAASEKTEARV-------------------------RKGHEERHPNAITAAATT--------GDWLTSGKLGVSTEKTSGDEEVAGGVCDSGYELSTGRKPKRGVKTSSSATIPTTIGPGGWLASGTVGVPVDDDSEWSAQDGDGGMRGPFTVSEETQTEENIDEVTKKSTGSKLPPWAKPWTPLPESDVTVDPVPSRDQE--SKKQDITTTATPDWILASLGQSNDDALVEITASGGLDSEEKGLD-WLVKGVDPA-GISVQDTQGLPPTAAGSNTSDWLLQVAIGGGGANGAKLKKKPNQP-----STSVAPNALSWMTNIKRRSSTDLEDVCVGASVVKEKTKVGSGGWMQSGALGAPDSVEEEQALEEARAA--VSHPRPRNKARSSDATSDRRPSLSGGAPAWNPKQLTETGADEPTESRKGTGXXXXXXXXXXXXXXXXXXXKGSSLADATPAXXXXXXXXXXXXXXXXAPAAKAGVPSTHEDTRQGGRSSEKQQAQQPA-----LPDWLTVAA--GGSSPKEAFDGAKDESAEAHVEGITMHRDESDAAADDREGGLGWLKAVITSDKKVAAAPSAVAMVYKSVDESKSTQGVATSTDWLSQAAMSIADADSGHCSETKNVMRCRNSLVTTGGWISM-KLGLPV----DEECASNGKAESDVREAETTSTKAKKIYPGIPANNDRGPAVQPAGWLSAAMTGKLGVAADSSDGDDGQAGEDGRNLKMASSSTQWEDRETEDRTRAPSST-----LPPWAARWTPPSPDPP--PEDEEKPTVES-ETKPTPSG--LDWIKNEMPCTPEETSKGASAGGDQVVAN--GCGRTIEDSSGLDWLKEVSSCGDVSMHDTIASARNSHEAALSGRGGETYAASVPPTVGATAGGSGIDWLVDAAASEKTEVRGREGHEERHSNAMTAA---ATSGGWLTSGKLVVSTEKDSGDEVGTDGVCDSGYELSISRKPKSSVKTNSSVTMPTATGPGGWLASGTLGVPVDDGSERSAQGGDGGIRDSFMVSEETQTEEDIEEVAKKGTGSKLPPWAKSWTPPPEPDVTEDPVPSLDKNSKKQDITVAVTPDWIIASLGRSDGDAPPAETPTSGGVDSEGKGLDWLAKAVDPASSSVQDTQ---GLHPAAAGSNTSDWLLQTVVG---NGGGTGGAKLKKKPNQPSTSVAPNALSWMTKMKRRSSIDLEDPCVEALVVETKAKVGPGGWMQSGALGAPDSIEEEKALEEARAASSHPRPSNQ---TSSSDATSDRRPSLSDGAPAWTPKQLAET 7543
S E+ + + P +PDWL AAAG P +E + + A DE GG L+ D DWL+ A S G+TK R S+VT TGGW+S+ KLG+ +++ + +D GP GW MSSG LG A+D G E DR ++ VT G E G A LPPWA P P P PEV +P TP + ++ GS I DWL V+ T +S + GA++ + PTAG + G G+ WL A S A G +R P+A AA G WL+S KLGVSTE+ S D++ AG + +K RG + +S + GG P V+ ETQTE++I+ VT++ KLPPWAKP+ P P+ DV D E +K++ +ATPDWILASLG + D SGG+ + G + WL + + G D P +N DWL Q A + P Q +V + LSWM +KR+SS DL+D V +V + K K GGW+Q G LGAPD++ EE LE+ARAA ++ P +++RS RRPSLSGG P W P + E GA S +T XXXXXXXXXXXXXXX P A A T E ++G + K++ + PA + DWL AA G +S +E+ + +E RD+ D A GL WL S K PSA A S S++G A DWL+ A SG + V R GGW+S KLGLP D++ A V +A+ KA+ G ++G G++ R + TQ +D + E TR + LPPWA + PP P P P+ + T+E E +P SG W+ +E A + A+ G G+ + GL WL E +S DT A+ S SVP DWL DA + RG H + + A A+ A GGW++SGKL VST D DE G D G S KP+ K S ++ A GP GWL+SG LGVP D S+ DGG M + ETQTEE+IEE K G KLP ++ D TPDWI+ASLG A A P GG S G DWL VQ+ Q G GSN DWL Q ++P + + LSWMT MKRRSS+DL D VE + + KAK PGGW+Q GALGAPD++EE ALEEARAASS R S T + AT RRPSL G P W PK LA T
Sbjct: 442 SGEEVEKEGPEMPDWLAAAAGVPSGQEAPK-------------VPSEEPGPVAAGPGDEDGGGNDGLEAGGGLD-------------------------DWLNVAKSS---------GQTK-----RKSVVTVAAPAATGGWMSSGKLGISTEDDXXXXXXXXXXXXXXXXXXXXXXXXXAAQSPADTSGP----GGW----MSSGALGAPAEDESGDEDSGGGETDRGVGVTIETQTEEDIEAVTKGGATEKGN--------APKLPPWAK---PYVPPPKPEV-----------------------VPDTPPKADSAPQGAPEKQ-----GSEI-----PDWLAAVAG--------TSSSREDPSGAMIEEA-------GPTAGQEDSAGGGGLSWLTQAARSSTFGAAAPIDXXXXXXXXXXXXXXXXXXXAAKSTGQTKRKPHATATAAAKAAAVPAAPGGWLSSVKLGVSTEEDS-DQDDAGKTAGRSTKSKKKKKQARGSVSVASXXX---------XXXXXXXXXXPEXXXXXXXXXGGGDSQPVLVTMETQTEDDIEGVTERGNVPKLPPWAKPYVPPPKDDVAPDSTADSTAEIPPEKEETDASATPDWILASLGDQDADGF-----SGGVPASGGGSNNWLSQAAEQEPGAGASDM----PNTGDTNAPDWLQQAAAPNAKPKHRQAASMPQQRPGIARKAAVPASPLSWMKQVKRQSSMDLDDQTVETTVAQAKAKAAPGGWLQIGVLGAPDALAEENELEQARAASPLTSTGPESRSRSEG----RRPSLSGGPPPWAPAK--EEGA----------------------------VGDSGSTTTSTHDVXXXXXXXXXXXXXXXXPTAVAAEAETTEQ-KEGSEEAAKEKGE-PATSGVRVSDWLAAAATTGTASGEESTNALGEE------------RDQQDGEASGGSDGLSWLTQAADSHK-----PSAAASGIPSTAGVDSSEGDA-GADWLAVAK------SSGQAKRSPAVKRPSVGAAAPGGWMSSGKLGLPAGDGSDDDQAGKTSGSGGVAKAKXX-XKARGSVSGTXXXXXXXXXXXXXXXXXXXXX-----------XEEGSGGDNDRRGAAVTIETQTDD-DIEAATRGAAERGSTRKLPPWAKPYVPPDPIPEVVPDTAAELTIEKQELEPAGSGGVPSWLAAVAGAPADEKHSDALGQERALEADEGGVGQASGGNDGLGWLTEAAS------KDTAAATPAS--------------TSVP------------DWLGDATS------RGMTKHNKSSTAAKRASIKSAAPGGWMSSGKLGVSTGDDGSDEDQA-GKTDRG-----SAKPRKKKKQPSRGSVSAAGGPAGWLSSGALGVPAQDESDEDGGDSDGGR--PLMATTETQTEENIEEATKTANGPKLPXXXXXXXXXXXXXXXXXXXXXXXXXEQEHD--TPATPDWILASLGPDAEGA--AAAPAPGG--SPG---DWL----------VQENQAGGGPTGTGGGSNGPDWLQQATAAPTAKPANRSRGAATQRPGGGRKAATQSPLSWMTSMKRRSSMDLNDQGVEEAIAQAKAKTIPGGWLQMGALGAPDAVEEANALEEARAASSLTRTSTNGKGTPGAAATDVRRPSLEQGLPPWAPK-LATT 1853
BLAST of mRNA_F-serratus_M_contig1393.2837.1 vs. uniprot
Match: A0A6H5KKG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKG6_9PHAE) HSP 1 Score: 195 bits (495), Expect = 8.060e-47 Identity = 149/376 (39.63%), Postives = 182/376 (48.40%), Query Frame = 2
Query: 8927 GRGGETYVASVPPTVGATAGGSGIDWLVDAAASEKTEVRGGEGHKKRHSNAMTA----AAPSGGWLTSGKLVVSTERDSGDEVDTGGVCDSGYELSIGRKPKSDLKASSSVTMPTATGPGGWLASGTLGVPVDNESERSAQDGDGGIRGSFGVSEETQTEENIEEAAKKGTGSKLPPWAKPWTPPPEPDVTGDPVPPRDKDSKKQDITVAVTPDWILASLGRSNGDAPPAETSTSGAVDSEGKGLDWLVKAVDPASSSVQDTQGLHPAAAGSNTS--DWLLQTVVGNGGGTGG---AKLKKKPNQPSTSVAPNALSWMTKMKRRSSIDLEDPCVEALVVETKAKVGPGGWMQSGALGAPDSIEEEKALEEARAASS 10027
G G T A+ A S DWL A + RG H KR + A A AAP GGW++SGKL ++T DS DE D G D G +K K + S +P A GP GWL+SG LGVP ES+ + D DGG + ETQTE+NIE A K G KLPPWAKPWTP P TPDWILASL P + A G DW V+ ++ G PA G ++ DWL Q + G ++P + A + LSWM+ MKRRSS+DL D VE + + KAK PGGW+Q GALGAPD++EE ALEEARAASS
Sbjct: 499 GLGWLTEAANKNTAAATPASSSAPDWLAGAKS------RGTTKHNKRSTAAKRASIGSAAP-GGWMSSGKLGLATGDDSSDE-DQAGKTDRGSAKPRMKKKKQQRRGS----VPAAGGPAGWLSSGALGVPAQYESDENGGDSDGGRP--LMATTETQTEDNIEAATKTANGPKLPPWAKPWTPXPPXXXXXXXX--XXXXXXXXXXXXPGTPDWILASLD-------PDTEGAAAAPAPGGSPGDWHVQ---------ENQAGGGPAGTGGGSTGPDWLQQATAASTGKPANRWRGAATQRPGGGRKAAAQSPLSWMSSMKRRSSMDLNDQGVEEAIAQAKAKTIPGGWLQIGALGAPDAVEEANALEEARAASS 842
BLAST of mRNA_F-serratus_M_contig1393.2837.1 vs. uniprot
Match: A0A6H5KVL2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVL2_9PHAE) HSP 1 Score: 167 bits (424), Expect = 1.120e-37 Identity = 199/663 (30.02%), Postives = 274/663 (41.33%), Query Frame = 2
Query: 509 DWLSQAALSSTDVYRGRGRTTKEAEERRSSSIAPGGWMYT-KLGVSVDEEEEDEQRGTEVRETEMTSKKGGKK---TIPEKAVNDAKGQPAQ---PSGWLSEVISSGKLGV-ATDGSDDADGRSEKNEDGLKMVSSSTQWE------AEEGK-DRLRAPVSTLPPWAVRWTPPSPDPLHEVVQKPTVETEAKPEASGLDWIKNEMSCTLANTSTGASTSG----GEVIATGLATTNRDSS----GLDWLKEVTAPDGFSVHGTIASPQIPHGTVIARNFREANKASAPPTAGPAAAETGIDWLVDAAADEKREAKVCEGRVERRPNVMT--------VVATSGGWLTSGKLGGLTEKNSSDEEGAGGVCDSGHEPSADKKPKLGVKTSISATIPTATGLGDWLASGTLGIPADDESEKSAQDEDGGMRGSFMVSKKTQTEEDIEEVAKKSTGSKFPPWAKPWTPPPE----PDATGDPAPPRDDVIQKQDTTAAATPDWILASLGPSDNDAPAG--TAAGGGLDSEENSLGWLTQAVTQASTSVGDIQGLPPTAEACNTPDWLLQAVVGXXXXXXPKLKKKPNQPS-----TGVAPSALSWMTKRKRRSSMDLEDPFVEASMLEANTKAVPGGWMQSGALGAPDLIDEEQALEEAQSASSHPR 2371
DWL +V + G+T +++ ++ A GGWM + KLG+S ++ + + G K GG T P+ A PA P GW+ SG L A D S D D S + + G+ V+ TQ E A+ G ++ AP LPPWA KP AN++ + G +I T ++ S GL WL + G S G A P V+ N DWL A + G+ +R+P+ V A GGWL+SGKLG TE+ + D++ AG P KK +G +P A GG +V+ +TQTE+DIE V ++ K PPWAKP+ PPP+ P++T D + +K++T A+A PDWILA+LG D D G A+GGG S WL+ A Q + +P T + N PDWL QA + P Q S V S LSWM + KRRSSMDL+DP VE ++ +A KA PGGW+Q GALGAPD + EE LE+A++AS R
Sbjct: 521 DWL--------NVAKHSGQTKRKSVVTVAAPAATGGWMTSGKLGISTQDDSDQDDAG----------KTGGSVSAVTKPKXXXXXAAQSPADTSGPGGWMG----SGALWAPAEDESGDEDSGSSETDRGV-GVTIETQTEEDIEAVAKSGATEKGNAPK--LPPWA------------------------KPYVXXXXXXXXXXXXXXANSAPQGAPEKQEPFGAMIEEAQPTAGQEDSAGGGGLSWLTQAA---GSSTSGAAAPIDKPSAAVVXXXXXXVN-----------------DWLAVAKSS---------GQTKRKPHATATAAAKAAAVPAAPGGWLSSGKLGVSTEEEN-DQDDAGKTAGRSTTPKKKKKQAIGA-------VPVAXXXXXXXXXXXXXXXXXXXXXXXXG---GGDGQPILVTMETQTEDDIEGVTERGNVPKLPPWAKPYVPPPKDDVVPESTADSXXXK--TPEKEETDASAAPDWILAALGDQDADGFRGGVPASGGG------SKNWLSHAAEQEPGA--GASDMPNTGDT-NAPDWLQQAAAPSAKPKDRQAASIPQQRSGIARKAAVPASPLSWMKQVKRRSSMDLDDPTVETTVAQAKAKAAPGGWLQIGALGAPDALAEENELEQARAASPRTR 1083 The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1393.2837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-serratus_M_contig1393.2837.1 >prot_F-serratus_M_contig1393.2837.1 ID=prot_F-serratus_M_contig1393.2837.1|Name=mRNA_F-serratus_M_contig1393.2837.1|organism=Fucus serratus male|type=polypeptide|length=3342bp MPPWAKPYKAKTEASAPSGVSEVIDIQQTPSLERKISSSPPREDGLPDWLback to top mRNA from alignment at F-serratus_M_contig1393:134836..157744- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-serratus_M_contig1393.2837.1 ID=mRNA_F-serratus_M_contig1393.2837.1|Name=mRNA_F-serratus_M_contig1393.2837.1|organism=Fucus serratus male|type=mRNA|length=22909bp|location=Sequence derived from alignment at F-serratus_M_contig1393:134836..157744- (Fucus serratus male)back to top Coding sequence (CDS) from alignment at F-serratus_M_contig1393:134836..157744- >mRNA_F-serratus_M_contig1393.2837.1 ID=mRNA_F-serratus_M_contig1393.2837.1|Name=mRNA_F-serratus_M_contig1393.2837.1|organism=Fucus serratus male|type=CDS|length=20052bp|location=Sequence derived from alignment at F-serratus_M_contig1393:134836..157744- (Fucus serratus male)back to top |