mRNA_F-serratus_M_contig1391.2830.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1391.2830.1
Unique NamemRNA_F-serratus_M_contig1391.2830.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1391.2830.1 vs. uniprot
Match: A0A6H5K8T1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8T1_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 2.550e-31
Identity = 59/91 (64.84%), Postives = 77/91 (84.62%), Query Frame = 3
Query:    3 KIEFYDCAGQVDYAGMHQTFLTRRALYLLVWDVKLFCGLDDRSLEKAVYTNIMRWLYTLHLRAPGSTVILVANKCDTTPLSNFEDTTKKLK 275
            K+EF+DCAGQVDYAGMHQTFLTRRALYLLV D+  + G+DD  L+KA++ +IMRWLY L+LRAPGSTV+LVANKCD + +  F +T ++++
Sbjct:  121 KVEFFDCAGQVDYAGMHQTFLTRRALYLLVVDITKYHGVDD--LDKAIHDDIMRWLYYLYLRAPGSTVVLVANKCDGS-IDKFAETAERIQ 208          
BLAST of mRNA_F-serratus_M_contig1391.2830.1 vs. uniprot
Match: A0A6H5JW02_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW02_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 9.010e-31
Identity = 56/75 (74.67%), Postives = 62/75 (82.67%), Query Frame = 3
Query:    6 IEFYDCAGQVDYAGMHQTFLTRRALYLLVWDVKLFCGLDDRSLEKAVYTNIMRWLYTLHLRAPGSTVILVANKCD 230
            +EFYDCAGQVDY GMHQ FLTRRALYLLVWDV    G  D  L++ ++ +IMRWLY LHLRAPGSTVILVANKCD
Sbjct:  275 VEFYDCAGQVDYYGMHQNFLTRRALYLLVWDVLRCHGKTDDDLDEVIFQDIMRWLYVLHLRAPGSTVILVANKCD 349          
BLAST of mRNA_F-serratus_M_contig1391.2830.1 vs. uniprot
Match: D7FVX5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVX5_ECTSI)

HSP 1 Score: 120 bits (301), Expect = 1.090e-29
Identity = 54/75 (72.00%), Postives = 60/75 (80.00%), Query Frame = 3
Query:    6 IEFYDCAGQVDYAGMHQTFLTRRALYLLVWDVKLFCGLDDRSLEKAVYTNIMRWLYTLHLRAPGSTVILVANKCD 230
            +EFYDCAGQVDY GMHQTFLTRRALYLLVWDV    G +   L+K V  +IM+WLY LHLR PGS V+LVANKCD
Sbjct:  437 VEFYDCAGQVDYYGMHQTFLTRRALYLLVWDVSRCHGKESNDLDKVVSEDIMKWLYALHLRVPGSAVLLVANKCD 511          
BLAST of mRNA_F-serratus_M_contig1391.2830.1 vs. uniprot
Match: A0A267E8A3_9PLAT (Uncharacterized protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267E8A3_9PLAT)

HSP 1 Score: 60.5 bits (145), Expect = 1.350e-8
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 3
Query:   15 YDCAGQVDYAGMHQTFLTRRALYLLVWDVKLFCGLDDRSLEKAVYTNIMRWLYTLHLRAPGSTVILVANKCD 230
            +D  GQ +Y   HQ FL++RA+YL+VWD++      DR +E     ++ +WL  +H RAP S+VI+V    D
Sbjct:   74 WDFGGQKEYYATHQYFLSKRAIYLVVWDLRT----GDRGME-----SVHQWLVNIHSRAPRSSVIIVGTHLD 136          
BLAST of mRNA_F-serratus_M_contig1391.2830.1 vs. uniprot
Match: A0A1I8JJ84_9PLAT (Non-specific serine/threonine protein kinase n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8JJ84_9PLAT)

HSP 1 Score: 60.5 bits (145), Expect = 1.360e-8
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 3
Query:   15 YDCAGQVDYAGMHQTFLTRRALYLLVWDVKLFCGLDDRSLEKAVYTNIMRWLYTLHLRAPGSTVILVANKCD 230
            +D  GQ +Y   HQ FL++RA+YL+VWD++      DR +E     ++ +WL  +H RAP S+VI+V    D
Sbjct: 1086 WDFGGQKEYYATHQYFLSKRAIYLVVWDLRT----GDRGME-----SVHQWLVNIHSRAPRSSVIIVGTHLD 1148          
BLAST of mRNA_F-serratus_M_contig1391.2830.1 vs. uniprot
Match: A0A267FM03_9PLAT (Non-specific serine/threonine protein kinase (Fragment) n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267FM03_9PLAT)

HSP 1 Score: 60.5 bits (145), Expect = 1.360e-8
Identity = 29/72 (40.28%), Postives = 44/72 (61.11%), Query Frame = 3
Query:   15 YDCAGQVDYAGMHQTFLTRRALYLLVWDVKLFCGLDDRSLEKAVYTNIMRWLYTLHLRAPGSTVILVANKCD 230
            +D  GQ +Y   HQ FL++RA+YL+VWD++      DR +E     ++ +WL  +H RAP S+VI+V    D
Sbjct: 1159 WDFGGQKEYYATHQYFLSKRAIYLVVWDLRT----GDRGME-----SVHQWLVNIHSRAPRSSVIIVGTHLD 1221          
BLAST of mRNA_F-serratus_M_contig1391.2830.1 vs. uniprot
Match: A0A2R5GNV1_9STRA (Leucine-rich repeat serine/threonine-protein kinase 2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GNV1_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 2.530e-8
Identity = 27/75 (36.00%), Postives = 43/75 (57.33%), Query Frame = 3
Query:    6 IEFYDCAGQVDYAGMHQTFLTRRALYLLVWDVKLFCGLDDRSLEKAVYTNIMRWLYTLHLRAPGSTVILVANKCD 230
            ++ +D AGQ  Y   HQ FL+RR LYLLVWDV        +  +  +   +  W+Y++  R PG+ ++++A K D
Sbjct:  907 LDMWDFAGQSVYYRTHQIFLSRRTLYLLVWDV-------SKHQQAQIDMEVCFWVYSVQARIPGAVILIIAAKTD 974          
BLAST of mRNA_F-serratus_M_contig1391.2830.1 vs. uniprot
Match: L1I8G5_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1I8G5_GUITC)

HSP 1 Score: 59.3 bits (142), Expect = 3.420e-8
Identity = 34/86 (39.53%), Postives = 46/86 (53.49%), Query Frame = 3
Query:   18 DCAGQVDYAGMHQTFLTRRALYLLVWDVKLFCGLDDRSLEKAVYTNIMRWLYTLHLRAPGSTVILVANKCDTTPLSNFEDTTKKLK 275
            D  GQ  YA  +Q F+ RRALYLLVW+V+   G  D+   + +   I  WL     R PGS+V+LVA   D    S   D  +++K
Sbjct:  275 DFGGQQIYAKTNQYFIVRRALYLLVWNVR---GKRDKQSMEELKMMIATWLRATQARVPGSSVLLVATHIDLVGESEVTDQCEEVK 357          
BLAST of mRNA_F-serratus_M_contig1391.2830.1 vs. uniprot
Match: U2NM77_9CLOT (Roc domain-containing protein n=2 Tax=Clostridium intestinale TaxID=36845 RepID=U2NM77_9CLOT)

HSP 1 Score: 58.5 bits (140), Expect = 6.300e-8
Identity = 32/77 (41.56%), Postives = 42/77 (54.55%), Query Frame = 3
Query:    3 KIEFYDCAGQVDYAGMHQTFLTRRALYLLVWDVKLFCGLDDRSLEKAVYTNIMRWLYTLHLRAPGSTVILVANKCDT 233
            ++  +D  GQ  Y   HQ FLT+R+LYLL+WD +     +D       Y  I  WL T+   A  S +ILV NKCDT
Sbjct:  307 RLNVWDFGGQEIYHATHQFFLTKRSLYLLIWDGQA----EDE------YGRIEYWLKTIESFANDSPIILVVNKCDT 373          
BLAST of mRNA_F-serratus_M_contig1391.2830.1 vs. uniprot
Match: A0A7M6DPN8_9CNID (Non-specific serine/threonine protein kinase n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPN8_9CNID)

HSP 1 Score: 58.5 bits (140), Expect = 6.460e-8
Identity = 30/75 (40.00%), Postives = 40/75 (53.33%), Query Frame = 3
Query:   15 YDCAGQVDYAGMHQTFLTRRALYLLVWDVKLFCGLDDRSLEKAVYTNIMRWLYTLHLRAPGSTVILVANKCDTTP 239
            +D AGQ DY   HQ FL+RR+LYLL+W        D + L   V   +  WL  L  R PG+T+I++    D  P
Sbjct:  556 WDFAGQDDYYATHQCFLSRRSLYLLIW--------DSQELSNGV-NGLKLWLDNLTTRVPGATIIVIGTMLDKVP 621          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1391.2830.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8T1_9PHAE2.550e-3164.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW02_9PHAE9.010e-3174.67Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FVX5_ECTSI1.090e-2972.00LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A267E8A3_9PLAT1.350e-840.28Uncharacterized protein n=1 Tax=Macrostomum lignan... [more]
A0A1I8JJ84_9PLAT1.360e-840.28Non-specific serine/threonine protein kinase n=1 T... [more]
A0A267FM03_9PLAT1.360e-840.28Non-specific serine/threonine protein kinase (Frag... [more]
A0A2R5GNV1_9STRA2.530e-836.00Leucine-rich repeat serine/threonine-protein kinas... [more]
L1I8G5_GUITC3.420e-839.53Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
U2NM77_9CLOT6.300e-841.56Roc domain-containing protein n=2 Tax=Clostridium ... [more]
A0A7M6DPN8_9CNID6.460e-840.00Non-specific serine/threonine protein kinase n=1 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1391contigF-serratus_M_contig1391:144112..144601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.5
Seed ortholog evalue3.8e-16
Seed eggNOG ortholog2880.D7FVX5
Preferred nameSLITRK2
Hectar predicted targeting categoryother localisation
GOsGO:0000902,GO:0000904,GO:0005575,GO:0005623,GO:0005886,GO:0007275,GO:0007399,GO:0007409,GO:0008150,GO:0009653,GO:0009987,GO:0016020,GO:0016021,GO:0016043,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031224,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0044087,GO:0044089,GO:0044425,GO:0044464,GO:0048468,GO:0048518,GO:0048522,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0051963,GO:0051965,GO:0061564,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0120036,GO:0120039,GO:2000026
EggNOG free text desc.positive regulation of synapse assembly
EggNOG OGs2CMPC@1,2QR6C@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size284
Cds size237
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1391.2830.1prot_F-serratus_M_contig1391.2830.1Fucus serratus malepolypeptideF-serratus_M_contig1391 144159..144601 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929371.807598-UTR-F-serratus_M_contig1391:144111..1441581622929371.807598-UTR-F-serratus_M_contig1391:144111..144158Fucus serratus maleUTRF-serratus_M_contig1391 144112..144158 +
1690962821.140416-UTR-F-serratus_M_contig1391:144111..1441581690962821.140416-UTR-F-serratus_M_contig1391:144111..144158Fucus serratus maleUTRF-serratus_M_contig1391 144112..144158 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929371.823285-CDS-F-serratus_M_contig1391:144158..1442511622929371.823285-CDS-F-serratus_M_contig1391:144158..144251Fucus serratus maleCDSF-serratus_M_contig1391 144159..144251 +
1690962821.1555846-CDS-F-serratus_M_contig1391:144158..1442511690962821.1555846-CDS-F-serratus_M_contig1391:144158..144251Fucus serratus maleCDSF-serratus_M_contig1391 144159..144251 +
1622929371.8505607-CDS-F-serratus_M_contig1391:144457..1446011622929371.8505607-CDS-F-serratus_M_contig1391:144457..144601Fucus serratus maleCDSF-serratus_M_contig1391 144458..144601 +
1690962821.1640148-CDS-F-serratus_M_contig1391:144457..1446011690962821.1640148-CDS-F-serratus_M_contig1391:144457..144601Fucus serratus maleCDSF-serratus_M_contig1391 144458..144601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1391.2830.1

>prot_F-serratus_M_contig1391.2830.1 ID=prot_F-serratus_M_contig1391.2830.1|Name=mRNA_F-serratus_M_contig1391.2830.1|organism=Fucus serratus male|type=polypeptide|length=79bp
MHQTFLTRRALYLLVWDVKLFCGLDDRSLEKAVYTNIMRWLYTLHLRAPG
STVILVANKCDTTPLSNFEDTTKKLKNL*
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mRNA from alignment at F-serratus_M_contig1391:144112..144601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1391.2830.1 ID=mRNA_F-serratus_M_contig1391.2830.1|Name=mRNA_F-serratus_M_contig1391.2830.1|organism=Fucus serratus male|type=mRNA|length=490bp|location=Sequence derived from alignment at F-serratus_M_contig1391:144112..144601+ (Fucus serratus male)
CAAAAATAGAATTTTACGACTGCGCGGGTCAGGTGGACTACGCCGGAATG CACCAAACATTCTTGACCCGACGTGCTTTGTACCTGCTGGTGTGGGACGT CAAACTATTTTGTGGTCTTGATGATCGAAGTCTTGAGAAGGTGTGTGCTT GGCCAGCTTTGTCATGAAACGGTGATGACGTTTTTAACACAAGTGTTAGC AAAACCATTTCAAGCGTATTCCAATCATTTGCATGACTCGCAGCAGTTAC AGAACCTGTGAACGACCTAGCAACGTTCCAACACCTTCGTTCAATCCCTG AGATTGATATTGCACTTTCCCCCGCGAATAATGCTGGTGAGTGCAGGCCG TCTACACGAACATAATGAGATGGCTGTACACGCTTCACCTTCGAGCACCA GGGTCTACGGTGATTCTGGTGGCTAACAAGTGCGACACCACGCCCTTGAG TAATTTCGAAGATACTACGAAAAAGTTGAAGAACTTGTGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1391:144112..144601+

>mRNA_F-serratus_M_contig1391.2830.1 ID=mRNA_F-serratus_M_contig1391.2830.1|Name=mRNA_F-serratus_M_contig1391.2830.1|organism=Fucus serratus male|type=CDS|length=474bp|location=Sequence derived from alignment at F-serratus_M_contig1391:144112..144601+ (Fucus serratus male)
ATGCACCAAACATTCTTGACCCGACGTGCTTTGTACCTGCTGGTGTGGGA
CGTCAAACTATTTTGTGGTCTTGATGATCGAAGTCTTGAGAAGATGCACC
AAACATTCTTGACCCGACGTGCTTTGTACCTGCTGGTGTGGGACGTCAAA
CTATTTTGTGGTCTTGATGATCGAAGTCTTGAGAAGGCCGTCTACACGAA
CATAATGAGATGGCTGTACACGCTTCACCTTCGAGCACCAGGGTCTACGG
TGATTCTGGTGGCTAACAAGTGCGACACCACGCCCTTGAGTAATTTCGAA
GATACTACGAAAAAGTTGAAGAACTTGTGAGCCGTCTACACGAACATAAT
GAGATGGCTGTACACGCTTCACCTTCGAGCACCAGGGTCTACGGTGATTC
TGGTGGCTAACAAGTGCGACACCACGCCCTTGAGTAATTTCGAAGATACT
ACGAAAAAGTTGAAGAACTTGTGA
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