mRNA_F-serratus_M_contig139.2827.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig139.2827.1
Unique NamemRNA_F-serratus_M_contig139.2827.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig139.2827.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig139contigF-serratus_M_contig139:731898..732515 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size618
Cds size318
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig139.2827.1prot_F-serratus_M_contig139.2827.1Fucus serratus malepolypeptideF-serratus_M_contig139 732175..732492 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929365.7166748-UTR-F-serratus_M_contig139:731897..7321741622929365.7166748-UTR-F-serratus_M_contig139:731897..732174Fucus serratus maleUTRF-serratus_M_contig139 731898..732174 +
1690962818.1854477-UTR-F-serratus_M_contig139:731897..7321741690962818.1854477-UTR-F-serratus_M_contig139:731897..732174Fucus serratus maleUTRF-serratus_M_contig139 731898..732174 +
1622929365.736923-UTR-F-serratus_M_contig139:732492..7325151622929365.736923-UTR-F-serratus_M_contig139:732492..732515Fucus serratus maleUTRF-serratus_M_contig139 732493..732515 +
1690962818.201633-UTR-F-serratus_M_contig139:732492..7325151690962818.201633-UTR-F-serratus_M_contig139:732492..732515Fucus serratus maleUTRF-serratus_M_contig139 732493..732515 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929365.7270114-CDS-F-serratus_M_contig139:732174..7324921622929365.7270114-CDS-F-serratus_M_contig139:732174..732492Fucus serratus maleCDSF-serratus_M_contig139 732175..732492 +
1690962818.1937456-CDS-F-serratus_M_contig139:732174..7324921690962818.1937456-CDS-F-serratus_M_contig139:732174..732492Fucus serratus maleCDSF-serratus_M_contig139 732175..732492 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig139.2827.1

>prot_F-serratus_M_contig139.2827.1 ID=prot_F-serratus_M_contig139.2827.1|Name=mRNA_F-serratus_M_contig139.2827.1|organism=Fucus serratus male|type=polypeptide|length=106bp
MVGLHSTESDSYTYILESGQEPDELVQLPLKWFEARPLNTNYCTHSSRRH
GFTIHREQLKRYQTQLPNYLITVPHFEHTYRAEKDPRKLCGMAYDVWCIM
KQNVV*
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mRNA from alignment at F-serratus_M_contig139:731898..732515+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig139.2827.1 ID=mRNA_F-serratus_M_contig139.2827.1|Name=mRNA_F-serratus_M_contig139.2827.1|organism=Fucus serratus male|type=mRNA|length=618bp|location=Sequence derived from alignment at F-serratus_M_contig139:731898..732515+ (Fucus serratus male)
TTCGGAACCCTTTTTCGAGATATAGGGCGCATGATGCATGACGTGTTTTG
AAGGCGAGGGAAAGTGCTGTTTTAAATTTGACGTGATTGTGGTACTCAAT
TTGTTTTCTGAGAGGACTCGGTTCTGAGTGTATCATAGACAACCTCCGAT
CTGATCGGGCTGACGCGGGACGGGAAAGTCGAAACTACCTCGCAATTCCG
AATTTTCAGGCGCGAACGGGGACAGGAAATAAATCGTTTTCCCTATTCAG
CTGACCGAACAGGGTTGGCAACCTTACATGGTTGGTCTACACTCGACGGA
AAGCGATAGTTATACATACATACTTGAGTCAGGACAGGAACCGGATGAAC
TAGTACAATTGCCACTGAAGTGGTTTGAGGCTAGGCCGTTGAATACCAAC
TACTGTACCCATTCATCGAGGAGACACGGCTTTACAATACATAGAGAGCA
ACTCAAACGGTATCAAACACAATTACCCAATTACCTAATTACTGTACCAC
ACTTCGAGCACACGTACAGGGCAGAAAAAGACCCACGTAAGCTGTGTGGT
ATGGCGTATGACGTATGGTGTATAATGAAGCAAAATGTAGTCTAGCCGCT
TTCATCTCATCACGTCAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig139:731898..732515+

>mRNA_F-serratus_M_contig139.2827.1 ID=mRNA_F-serratus_M_contig139.2827.1|Name=mRNA_F-serratus_M_contig139.2827.1|organism=Fucus serratus male|type=CDS|length=636bp|location=Sequence derived from alignment at F-serratus_M_contig139:731898..732515+ (Fucus serratus male)
ATGGTTGGTCTACACTCGACGGAAAGCGATAGTTATACATACATACTTGA
GTCAGGACAGGAACCGGATGAACTAGTACAATTGCCACTGAAGTGGTTTG
AGGCTAGGCCGTTGAATACCAACTACTGTACCCATTCATCGAGGAGACAC
GGCTTTACAATACATAGAGAGCAACTCAAACGGTATCAAACACAATTACC
CAATTACCTAATTACTGTACCACACTTCGAGCACACGTACAGGGCAGAAA
AAGACCCACGTAAGCTGTGTGGTATGGCGTATGACGTATGGTGTATAATG
AAGCAAAATGTAGTCTAGATGGTTGGTCTACACTCGACGGAAAGCGATAG
TTATACATACATACTTGAGTCAGGACAGGAACCGGATGAACTAGTACAAT
TGCCACTGAAGTGGTTTGAGGCTAGGCCGTTGAATACCAACTACTGTACC
CATTCATCGAGGAGACACGGCTTTACAATACATAGAGAGCAACTCAAACG
GTATCAAACACAATTACCCAATTACCTAATTACTGTACCACACTTCGAGC
ACACGTACAGGGCAGAAAAAGACCCACGTAAGCTGTGTGGTATGGCGTAT
GACGTATGGTGTATAATGAAGCAAAATGTAGTCTAG
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