mRNA_F-serratus_M_contig139.2809.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig139.2809.1
Unique NamemRNA_F-serratus_M_contig139.2809.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig139.2809.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig139contigF-serratus_M_contig139:452035..452563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size281
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929365.5920734-CDS-F-serratus_M_contig139:452034..4521871622929365.5920734-CDS-F-serratus_M_contig139:452034..452187Fucus serratus maleCDSF-serratus_M_contig139 452035..452187 +
1690962818.1296673-CDS-F-serratus_M_contig139:452034..4521871690962818.1296673-CDS-F-serratus_M_contig139:452034..452187Fucus serratus maleCDSF-serratus_M_contig139 452035..452187 +
1622929365.613098-CDS-F-serratus_M_contig139:452435..4525611622929365.613098-CDS-F-serratus_M_contig139:452435..452561Fucus serratus maleCDSF-serratus_M_contig139 452436..452561 +
1690962818.1454847-CDS-F-serratus_M_contig139:452435..4525611690962818.1454847-CDS-F-serratus_M_contig139:452435..452561Fucus serratus maleCDSF-serratus_M_contig139 452436..452561 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig139.2809.1prot_F-serratus_M_contig139.2809.1Fucus serratus malepolypeptideF-serratus_M_contig139 452035..452561 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig139.2809.1

>prot_F-serratus_M_contig139.2809.1 ID=prot_F-serratus_M_contig139.2809.1|Name=mRNA_F-serratus_M_contig139.2809.1|organism=Fucus serratus male|type=polypeptide|length=93bp
AKKAAAVETAKKAAAVETANKAAAVETAKKTPKPVAALLGGARLSAKERR
KISRQERERQKAKGKDSRTQAPVAIEKELYSKDYGGRTGTGAD
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mRNA from alignment at F-serratus_M_contig139:452035..452563+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig139.2809.1 ID=mRNA_F-serratus_M_contig139.2809.1|Name=mRNA_F-serratus_M_contig139.2809.1|organism=Fucus serratus male|type=mRNA|length=529bp|location=Sequence derived from alignment at F-serratus_M_contig139:452035..452563+ (Fucus serratus male)
GCTAAAAAAGCGGCGGCGGTGGAGACGGCTAAAAAAGCGGCGGCGGTGGA
GACGGCTAATAAAGCGGCGGCGGTGGAGACGGCTAAAAAAACGCCGAAGC
CGGTTGCGGCTCTTTTGGGGGGTGCACGGCTGTCCGCAAAGGAGAGACGA
AAGGTGAGTAAAAATCATACATCTTCCTGCGACCCTGGATGTGCGCAGCT
TTGACCTTTTTGATCCCACAATGAAATATGTCTTGGACGTGCGAACATAG
GCGGCATTTGATCCTAGCATAACTATACTACCTTAGCCCCGGTCGAACAG
ACCTTTTCGCAAGCGCTTGACCACGGACATACCTTCCCCTGTCAAAAACG
CCTTCCACCCCCGGTTAAATCGTGTAACTCTCGTTTGCGGTACCTGTAAA
GATCTCCCGACAAGAGCGCGAGCGCCAAAAAGCGAAAGGCAAAGACAGCC
GCACGCAAGCGCCTGTTGCAATTGAAAAAGAGCTCTACAGCAAAGATTAT
GGTGGGAGGACAGGCACGGGTGCTGATGC
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Coding sequence (CDS) from alignment at F-serratus_M_contig139:452035..452563+

>mRNA_F-serratus_M_contig139.2809.1 ID=mRNA_F-serratus_M_contig139.2809.1|Name=mRNA_F-serratus_M_contig139.2809.1|organism=Fucus serratus male|type=CDS|length=558bp|location=Sequence derived from alignment at F-serratus_M_contig139:452035..452563+ (Fucus serratus male)
GCTAAAAAAGCGGCGGCGGTGGAGACGGCTAAAAAAGCGGCGGCGGTGGA
GACGGCTAATAAAGCGGCGGCGGTGGAGACGGCTAAAAAAACGCCGAAGC
CGGTTGCGGCTCTTTTGGGGGGTGCACGGCTGTCCGCAAAGGAGAGACGA
AAGGCTAAAAAAGCGGCGGCGGTGGAGACGGCTAAAAAAGCGGCGGCGGT
GGAGACGGCTAATAAAGCGGCGGCGGTGGAGACGGCTAAAAAAACGCCGA
AGCCGGTTGCGGCTCTTTTGGGGGGTGCACGGCTGTCCGCAAAGGAGAGA
CGAAAGATCTCCCGACAAGAGCGCGAGCGCCAAAAAGCGAAAGGCAAAGA
CAGCCGCACGCAAGCGCCTGTTGCAATTGAAAAAGAGCTCTACAGCAAAG
ATTATGGTGGGAGGACAGGCACGGGTGCTGATATCTCCCGACAAGAGCGC
GAGCGCCAAAAAGCGAAAGGCAAAGACAGCCGCACGCAAGCGCCTGTTGC
AATTGAAAAAGAGCTCTACAGCAAAGATTATGGTGGGAGGACAGGCACGG
GTGCTGAT
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