mRNA_F-serratus_M_contig139.2808.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig139.2808.1
Unique NamemRNA_F-serratus_M_contig139.2808.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: D7FNQ5_ECTSI (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ5_ECTSI)

HSP 1 Score: 353 bits (906), Expect = 2.150e-117
Identity = 183/230 (79.57%), Postives = 200/230 (86.96%), Query Frame = 1
Query:  142 SRRRTRTYSSTSRLH-NYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQVGS 828
            SR   R YSST R+  NYLPMVLE+TPRGERAYDIYSRLLRERIIC+HGP+TEQM+SLVTAQLLFLESE+P KPINMYINSPGG+VTAGLA+YDTMQYV PEICTICMGQAASMGSLLLTAG+P MRFILPNAK               VMLHQPSGGA+GMAADIAI+AEEIIKTR+RLN+IYA+H+GREV EI KVMDRDFYMTAQEAI+FGVVDKI+ KRPKE  GS
Sbjct:   25 SRIAFRAYSSTRRVEMNYLPMVLESTPRGERAYDIYSRLLRERIICMHGPVTEQMTSLVTAQLLFLESENPDKPINMYINSPGGVVTAGLAIYDTMQYVRPEICTICMGQAASMGSLLLTAGSPEMRFILPNAK---------------VMLHQPSGGANGMAADIAIMAEEIIKTRARLNDIYAEHTGREVGEIEKVMDRDFYMTAQEAIEFGVVDKILKKRPKEGEGS 239          
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A0A835Z6X3_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6X3_9STRA)

HSP 1 Score: 286 bits (733), Expect = 1.760e-91
Identity = 149/223 (66.82%), Postives = 178/223 (79.82%), Query Frame = 1
Query:  145 RRRTRTYSSTSRLHNYLPMVLETTP-RGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRP 810
            R+  R+ SST+     +PMV+E+TP +GER +DIYSRLLRERI+ L GP++E+M+S+VTAQLLFLESEDP KPI+MYINSPGG+VTAGLA+YDTMQYVGP+ICT+CMGQAASM SLLLTAG P MR+ILPNA+               VMLHQPSGGA GMAADIAIVAEEI++TRS LN +Y+ H+G+ V EI KVMDRD +  AQ+AI FGVVD I  KRP
Sbjct:   15 RQLHRSISSTAVSRALVPMVVESTPGKGERGFDIYSRLLRERIVFLQGPVSEEMASVVTAQLLFLESEDPEKPISMYINSPGGLVTAGLAIYDTMQYVGPKICTVCMGQAASMASLLLTAGEPGMRYILPNAR---------------VMLHQPSGGAHGMAADIAIVAEEILRTRSVLNNLYSHHTGQPVSEIEKVMDRDTHYDAQQAIAFGVVDAIHEKRP 222          
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A0A7S2SUT0_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUT0_9STRA)

HSP 1 Score: 271 bits (693), Expect = 1.760e-85
Identity = 136/230 (59.13%), Postives = 170/230 (73.91%), Query Frame = 1
Query:  163 YSSTSRLHNYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQV----GSEDEP 840
            + S +RL   +P+VLE + RGER+YDIYSRLLRERIICLHG +TE+M+S+VTAQLLFLE+EDP +P +MYINSPGG+V+AGLA+YDTMQY+ P + T+CMGQAASMGSLLL  G    RF LPNAK               +MLHQPSGG  GMA+DIAI AEEI+KTRS LN++Y  H  +E+ ++  VMDRD + +AQEA+DFGV+D ++ KR  E V    G E  P
Sbjct:   15 FRSIARLRGIVPIVLEQSSRGERSYDIYSRLLRERIICLHGAVTEEMASVVTAQLLFLEAEDPDRPCSMYINSPGGLVSAGLAIYDTMQYIRPPVHTVCMGQAASMGSLLLAGGEAGKRFALPNAK---------------IMLHQPSGGTQGMASDIAIAAEEILKTRSSLNKLYVHHCQQELAQVEAVMDRDTWFSAQEALDFGVIDDMLRKREDEPVEEDHGGEGSP 229          
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: F0YHM6_AURAN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHM6_AURAN)

HSP 1 Score: 266 bits (680), Expect = 4.860e-84
Identity = 129/208 (62.02%), Postives = 165/208 (79.33%), Query Frame = 1
Query:  193 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKE 816
            +PMV+E + RGERA+DIYSRLL+ERII L+GP+ ++++S+VTAQLLFLESEDP  PI+MYINSPGG+VTAGLA+YDTMQY+ P + T+CMGQAASMGSLLL AG   MR  LPNA+               +MLHQPSGGA G A+DIAIVA+EI+KTR++LN+IY  H+ + + ++ KVMDRD Y TAQEA+DFGVVD+++  R K+
Sbjct:    2 VPMVIERSSRGERAFDIYSRLLKERIIILNGPVHDELASVVTAQLLFLESEDPTSPISMYINSPGGVVTAGLAIYDTMQYIQPAVATLCMGQAASMGSLLLAAGADGMRRALPNAQ---------------IMLHQPSGGAQGQASDIAIVAKEILKTRAKLNDIYVHHTKKPLADVEKVMDRDSYFTAQEAMDFGVVDEVVHPRTKD 194          
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A0A6U3X7K7_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3X7K7_9STRA)

HSP 1 Score: 264 bits (675), Expect = 4.870e-83
Identity = 130/205 (63.41%), Postives = 160/205 (78.05%), Query Frame = 1
Query:  193 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 807
            +P+VLE T RGERAYDIYSRLLRERIICLHGP+TE M+SLVTAQLLFLESE P +P++MYINSPGG+V+AGLA+YDTMQY+ PE+ T+CMGQAASMGSLLL  G P  R+ LPNAK               +MLHQPSGGA GMA+DIAI AEEI+KTR+ LN +Y +H+G+ +  + K MDRD +    +A +FGV+D+I+T R
Sbjct:   21 VPIVLEQTSRGERAYDIYSRLLRERIICLHGPVTEDMASLVTAQLLFLESELPDQPLSMYINSPGGLVSAGLAIYDTMQYIKPEVRTMCMGQAASMGSLLLAGGAPGHRYALPNAK---------------IMLHQPSGGAQGMASDIAIQAEEILKTRATLNNLYVRHTGQPLDRVEKAMDRDTWFDVTQAKEFGVIDQILTNR 210          
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: B8BVD6_THAPS (ATP-dependent Clp protease proteolytic subunit (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BVD6_THAPS)

HSP 1 Score: 263 bits (673), Expect = 4.940e-83
Identity = 127/205 (61.95%), Postives = 162/205 (79.02%), Query Frame = 1
Query:  193 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 807
            +P+VLE+   GERA+DIYSRLLRERIIC+HG +T+ M+SLVTAQLLFLE+E P KP+ MYINSPGG+VTAG+A+YDTMQY+ PE+ TICMGQAASMGSLLL  G+   RF LPNA+               +MLHQPSGGA GMA+DI I A EI++TR+ LN++Y  H+GRE+ EI +VMDRD +M  ++A+DFGV+D+++TKR
Sbjct:    2 VPVVLESGTTGERAFDIYSRLLRERIICVHGEVTDSMASLVTAQLLFLEAEAPEKPVYMYINSPGGLVTAGMAMYDTMQYIHPEVHTICMGQAASMGSLLLAGGSAGCRFALPNAR---------------IMLHQPSGGAQGMASDIDIQAREILRTRANLNQLYVHHTGRELEEIERVMDRDTFMDVRQAVDFGVIDEVLTKR 191          
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A0A7S3KZ88_9STRA (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KZ88_9STRA)

HSP 1 Score: 264 bits (675), Expect = 1.730e-82
Identity = 129/210 (61.43%), Postives = 165/210 (78.57%), Query Frame = 1
Query:  193 LPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRPKEQV 822
            +P+VLE+   GER++DIYSRLLRERIIC+HG +T+ M+SLVTAQLLFLESE+P +P+ MYINSPGG+VTAG+A+YDTMQY+ PE+ TICMGQAASMGS+LL  G P  RF LPN++               +MLHQPSGGA GMAADI I A EI++TR+ LN I A+H+ + + EI +VMDRDF+M AQ+A DFGV+D I+TKR K+++
Sbjct:   46 VPIVLESGAMGERSFDIYSRLLRERIICVHGEVTDVMASLVTAQLLFLESENPDRPVYMYINSPGGLVTAGMAMYDTMQYIRPEVQTICMGQAASMGSVLLAGGEPGYRFALPNSR---------------IMLHQPSGGAQGMAADIDIQAREILRTRANLNRIMAEHTKQSIEEIERVMDRDFFMDAQQAKDFGVIDHILTKRTKDEI 240          
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A0A6S9KWE2_HETAK (ATP-dependent Clp protease proteolytic subunit n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KWE2_HETAK)

HSP 1 Score: 263 bits (672), Expect = 4.140e-82
Identity = 135/245 (55.10%), Postives = 181/245 (73.88%), Query Frame = 1
Query:   82 EAGIKFSSGTMAAVVGDPC--SSRRRTRTYSST-SRLHNYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 807
            +A +K  S  +  +    C  SS+ + R ++S+     N +PMVLE++ RGERAYDIYSRLLRERII +HGPITEQ++S+VTAQLLFLE+EDP K + MYINSPGG+VTAG+A+YDTMQ++  ++ TICMGQAASMGSLLL  G P  R  LPNA+               +MLHQPSGGA GMA+DIAI AEEI++ RS LN++Y  H+G+ + +I +VM+RD +  AQ+A++FGV+DK+++KR
Sbjct:    2 QAIMKSFSSLLTRLAAPRCVPSSQNQMRFFTSSWEPTANLVPMVLESSNRGERAYDIYSRLLRERIIYVHGPITEQLASVVTAQLLFLEAEDPDKKLYMYINSPGGVVTAGMAIYDTMQFIQSDVATICMGQAASMGSLLLAGGAPGQRSALPNAR---------------IMLHQPSGGAQGMASDIAIQAEEILRIRSSLNQLYQHHTGQALADIERVMERDTFFDAQQALNFGVIDKVLSKR 231          
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A0A2D4BRY0_PYTIN (ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRY0_PYTIN)

HSP 1 Score: 258 bits (660), Expect = 1.030e-80
Identity = 127/222 (57.21%), Postives = 165/222 (74.32%), Query Frame = 1
Query:  142 SRRRTRTYSSTSRLHNYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKR 807
            SRRR  T+     L++ +PMVLE +PRGER YDIYSRLL+ERI+ +HGP+ + M+SLVTAQLLFLE+E P K + MYINSPGG+VT+GLA+YDTMQY+ P + T+CMGQAASMG+LLL AG P  R+ LPN++               +M+HQPSGGA GMA+DIAI AEEIIK R+RLN ++  H+G+ +  I K MDRD +M   EA++FG++D I+ KR
Sbjct:    3 SRRRLHTF-----LNSVVPMVLEQSPRGERVYDIYSRLLKERIVFVHGPVNDSMASLVTAQLLFLEAEHPEKDVYMYINSPGGVVTSGLAIYDTMQYIHPRVNTLCMGQAASMGALLLAAGAPGCRYALPNSR---------------IMVHQPSGGAQGMASDIAIQAEEIIKLRARLNGLFVHHTGKPLKTIEKAMDRDLFMDPPEALEFGIIDSIMNKR 204          
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Match: A8TKZ4_9PROT (ATP-dependent Clp protease proteolytic subunit n=3 Tax=Alphaproteobacteria TaxID=28211 RepID=A8TKZ4_9PROT)

HSP 1 Score: 257 bits (656), Expect = 3.700e-80
Identity = 131/210 (62.38%), Postives = 160/210 (76.19%), Query Frame = 1
Query:  181 LHNYLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLESEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSLLLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIAIVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVDKIITKRP 810
            +++ +PMV+E T RGERAYDIYSRLL+ERII + GPI + ++S+V AQLLFLE+E+P K I MYINSPGGIVT+G+A+YDTM+YV PEI T+CMG AASMGSLLLTAG P  R+ LPNAK               VM+HQPSGG  G A+DI I A EIIKTR RLN+IY +HSGR + EI K MDRD +MTA EA  FG++D++I KRP
Sbjct:    9 MNSLVPMVVEQTNRGERAYDIYSRLLKERIIFVMGPINDAVASVVCAQLLFLEAENPTKDIAMYINSPGGIVTSGMAMYDTMEYVRPEISTVCMGHAASMGSLLLTAGAPGKRYCLPNAK---------------VMIHQPSGGFQGQASDIEIHAREIIKTRERLNQIYVKHSGRSIDEIEKGMDRDNFMTADEAKAFGLIDEVIHKRP 203          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig139.2808.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FNQ5_ECTSI2.150e-11779.57ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A835Z6X3_9STRA1.760e-9166.82ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A7S2SUT0_9STRA1.760e-8559.13ATP-dependent Clp protease proteolytic subunit n=1... [more]
F0YHM6_AURAN4.860e-8462.02ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A6U3X7K7_9STRA4.870e-8363.41ATP-dependent Clp protease proteolytic subunit n=1... [more]
B8BVD6_THAPS4.940e-8361.95ATP-dependent Clp protease proteolytic subunit (Fr... [more]
A0A7S3KZ88_9STRA1.730e-8261.43ATP-dependent Clp protease proteolytic subunit n=1... [more]
A0A6S9KWE2_HETAK4.140e-8255.10ATP-dependent Clp protease proteolytic subunit n=2... [more]
A0A2D4BRY0_PYTIN1.030e-8057.21ATP-dependent Clp protease proteolytic subunit n=1... [more]
A8TKZ4_9PROT3.700e-8062.38ATP-dependent Clp protease proteolytic subunit n=3... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig139contigF-serratus_M_contig139:407520..410405 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score355.1
Seed ortholog evalue2.8e-95
Seed eggNOG ortholog2880.D7FNQ5
KEGG koko:K01358
KEGG Pathwayko04112,ko04212,map04112,map04212
Hectar predicted targeting categorymitochondrion
EggNOG free text desc.serine-type endopeptidase activity
EggNOG OGsCOG0740@1,KOG0840@2759
Ec32 ortholog descriptionATP-dependent Clp protease, proteolytic subunit ClpP
Ec32 orthologEc-01_004640.1
EC3.4.21.92
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002
Exons5
Model size1437
Cds size810
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929367.9941366-UTR-F-serratus_M_contig139:407519..4081071622929367.9941366-UTR-F-serratus_M_contig139:407519..408107Fucus serratus maleUTRF-serratus_M_contig139 407520..408107 -
1690962819.3376956-UTR-F-serratus_M_contig139:407519..4081071690962819.3376956-UTR-F-serratus_M_contig139:407519..408107Fucus serratus maleUTRF-serratus_M_contig139 407520..408107 -
1622929368.3528664-UTR-F-serratus_M_contig139:410366..4104051622929368.3528664-UTR-F-serratus_M_contig139:410366..410405Fucus serratus maleUTRF-serratus_M_contig139 410367..410405 -
1690962819.3951166-UTR-F-serratus_M_contig139:410366..4104051690962819.3951166-UTR-F-serratus_M_contig139:410366..410405Fucus serratus maleUTRF-serratus_M_contig139 410367..410405 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929368.0060294-CDS-F-serratus_M_contig139:408107..4082481622929368.0060294-CDS-F-serratus_M_contig139:408107..408248Fucus serratus maleCDSF-serratus_M_contig139 408108..408248 -
1690962819.3559506-CDS-F-serratus_M_contig139:408107..4082481690962819.3559506-CDS-F-serratus_M_contig139:408107..408248Fucus serratus maleCDSF-serratus_M_contig139 408108..408248 -
1622929368.0172071-CDS-F-serratus_M_contig139:408629..4087521622929368.0172071-CDS-F-serratus_M_contig139:408629..408752Fucus serratus maleCDSF-serratus_M_contig139 408630..408752 -
1690962819.3635187-CDS-F-serratus_M_contig139:408629..4087521690962819.3635187-CDS-F-serratus_M_contig139:408629..408752Fucus serratus maleCDSF-serratus_M_contig139 408630..408752 -
1622929368.0371323-CDS-F-serratus_M_contig139:409269..4094741622929368.0371323-CDS-F-serratus_M_contig139:409269..409474Fucus serratus maleCDSF-serratus_M_contig139 409270..409474 -
1690962819.3715453-CDS-F-serratus_M_contig139:409269..4094741690962819.3715453-CDS-F-serratus_M_contig139:409269..409474Fucus serratus maleCDSF-serratus_M_contig139 409270..409474 -
1622929368.0703282-CDS-F-serratus_M_contig139:409845..4099641622929368.0703282-CDS-F-serratus_M_contig139:409845..409964Fucus serratus maleCDSF-serratus_M_contig139 409846..409964 -
1690962819.3793626-CDS-F-serratus_M_contig139:409845..4099641690962819.3793626-CDS-F-serratus_M_contig139:409845..409964Fucus serratus maleCDSF-serratus_M_contig139 409846..409964 -
1622929368.3389235-CDS-F-serratus_M_contig139:410144..4103661622929368.3389235-CDS-F-serratus_M_contig139:410144..410366Fucus serratus maleCDSF-serratus_M_contig139 410145..410366 -
1690962819.3871524-CDS-F-serratus_M_contig139:410144..4103661690962819.3871524-CDS-F-serratus_M_contig139:410144..410366Fucus serratus maleCDSF-serratus_M_contig139 410145..410366 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig139.2808.1prot_F-serratus_M_contig139.2808.1Fucus serratus malepolypeptideF-serratus_M_contig139 408108..410366 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig139.2808.1

>prot_F-serratus_M_contig139.2808.1 ID=prot_F-serratus_M_contig139.2808.1|Name=mRNA_F-serratus_M_contig139.2808.1|organism=Fucus serratus male|type=polypeptide|length=270bp
MTLRSLFQRNLVHVEAGIKFSSGTMAAVVGDPCSSRRRTRTYSSTSRLHN
YLPMVLETTPRGERAYDIYSRLLRERIICLHGPITEQMSSLVTAQLLFLE
SEDPVKPINMYINSPGGIVTAGLAVYDTMQYVGPEICTICMGQAASMGSL
LLTAGTPNMRFILPNAKARERGQRRGGERKGGVMLHQPSGGASGMAADIA
IVAEEIIKTRSRLNEIYAQHSGREVVEIAKVMDRDFYMTAQEAIDFGVVD
KIITKRPKEQVGSEDEPRA*
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mRNA from alignment at F-serratus_M_contig139:407520..410405-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig139.2808.1 ID=mRNA_F-serratus_M_contig139.2808.1|Name=mRNA_F-serratus_M_contig139.2808.1|organism=Fucus serratus male|type=mRNA|length=2886bp|location=Sequence derived from alignment at F-serratus_M_contig139:407520..410405- (Fucus serratus male)
CAACATACAGCCTTCCTCAGGAGAGACTATCTGTAAAGCATGACGCTACG GTCGTTATTTCAACGGAATCTTGTGCACGTGGAGGCTGGCATTAAATTTT CTAGTGGTACCATGGCCGCCGTAGTAGGTGATCCCTGCAGCTCCCGAAGA CGAACCAGAACGTACAGCAGCACAAGCCGGTTGCACAACTATTTGCCCAT GGTCCTGGAGACGACCCCGAGGGGAGAGCGTGCGTACGACATCTACTCCA GGCTTCTCAGGGTGATCCAATGGAAGATTCCCCTGGTTATTTCTAGGTCC GGGTATGGACTCGTACCGGCATTTCTAATTTTACCTGCGTCAAATTGACG TTGCAACATCATCGTTCACAAACATGCTTTACACTTTACAGCCGCCGCAC GACACCCGTCCTCGTTCGCTGGTTCCCCTCTCGGCGCTCAGGAAAGGATC ATATGTTTGCATGGGCCCATCACAGAGCAGATGTCGTCGCTGGTAACAGC ACAGCTCCTGTTCCTAGAATCAGAAGACCCCGTGAAACCCATCAACATGT ACATAAACAGGTGAGGAAAGTACATCCACTGTCCAAGTATAGATATATTA GGAACATGGTTATGTCTCGTATTTACAACAGAAGACGATCTCGTCACCCT CTTCATCGTGAGTTCTTTGTTCTGGACTTAATCGCTGGTACTTGCCGCAC ACACGCGTCACGGACAAGCACATACTATACCCGAAACCCAAGACAACACT CATACGGGTTGTCTGCCTCATATGACCGAGTTCGCTTGCTTCCCTACATT ATAGCCATAGTTGTACCTCAGAGTTTTGTACGAAATTTTGTTCCCCAGCT GACAACGTTGAAGTCCTTTCTCACGCCGCGCTATCGATGCCCTGCCGCTG GGTGTGTGTGGGGGGGGTAATTATGCGTCAGTCCTGGCGGCATCGTAACA GCGGGTTTGGCGGTGTACGACACGATGCAGTATGTCGGCCCAGAGATATG TACAATTTGTATGGGGCAGGCTGCGTCTATGGGATCATTGCTCCTGACCG CGGGGACACCGAACATGCGTTTCATCTTACCCAACGCGAAGGCGAGAGAG AGAGGGCAAAGGAGGGGAGGGGAGAGGAAGGGAGGCGTCTCTCGGGGAGC TTGCGAGTAGCGCGTCGTGGCCGTTGAGCGATGAAAATAATTTGGTCCCT AGGCTGTGACGGTTAGGTGCCCCGATGACTTAGCCTTTTATTATTTTTCC GTGGATTCACAACAAAGAGGTAAGGGGAATGTGACTCAAGCGCTGGCCAT TTGTTGGTTTGCATTTCGGACACGTGGTGTTCACTCGGGCGTGTCGCAGC GATAGCCTCGTAGGCGAGGTAGCCGCATGGTGCTGAACAGCCAATACGGA CAACTTTTGTCTCGCTTGTATTTATCAGAGGAATCAGGGGTTTATGAAAG TACTAAATTAACATACCGGTATGCAGTATATACAAACATCACGCTCGGTG AAAAGTCCGGCACAGGCATGAAAACGCCTCCTTGTCGTGTGAGCTCCTGG TTCCGCGAGTGCATGTGAGAAAGTAATCCATACTCCGGTATTTCACGCGT TGGAGAAAAAAAATGAACAATCAGCTCTTTTATCCGAACCGAAACTCCTT CAGGTTATGTTGCATCAGCCTTCCGGTGGGGCGAGCGGGATGGCGGCCGA CATCGCAATCGTGGCGGAGGAAATCATCAAGACTAGATCGCGCCTGAACG AGATATATGCCCAACATTCGGGGCGGGTAAGCACTCGCATACCATGACCT AGCATCATTGATCGTTCTGTAAAATTTTAAGTGCTGTAGATGGCGTTTGT TGGCATCCCGTGCGAGGGAGCACCCCATTCCTTCCGTGTTACATATTCTC AAAACTCTCAAAACACTTAAAAATATATATCTTAGAGCATCGTCAATAAC AGCCCACAATTGCGACGGTGCTTATCCCCTCTGATGTCTCAGCACTGCAT CCGTTGCACGTGCTCGGCGAAGCCGCGGTCGCGGTAGCGATATTGTTACG TCGGGACATCTCTCCCTCGTGTGGTTCGTGTGACGGTGTATTTCACGCGT GCACCGCGATCGTTTCTGTTTCGTTTATTTTGCTGTTTCTTATCCCGGTG ATCAAAGGAGGTTGTGGAAATCGCGAAGGTGATGGATCGCGACTTCTACA TGACCGCTCAGGAAGCGATCGACTTTGGCGTTGTTGATAAGATAATTACG AAGCGACCGAAAGAGCAAGTGGGTTCCGAAGACGAACCAAGGGCGTAGGA CGTCTTGGGCCAAAGGGGTACGAAGTAATCACGTGTACATTTGGTACGGG CTCAACTCATATACTCAACAGCGACCAAAACTTTGCGTTGACATTGCAAG TGGTCCCCGAGACTCTCTTACATTCTCTGCGTGCGAGGTAGCCCGGCTCC CAATGCTATCTGTCACCCAGACCGTTTCAAGGAACAAGATAGAGTCGAGC GGCGATATCTCACTGTCGGGACTTCATTAATTTTTGACGAAAGCACCGTG TTCGGGTGTGTTTTAGGTCGGGTCCACCATGGATATGTTGATACCGAAAT ACAGTAGATTGATGTGAACAGCCACGAACGAAGGGGTTGGTTGGACGAAG TGGGGCACACATTGCAGATGTTATGCTATGCTCTCTAAACTCCTAGCATG TTGCGAAGGATACATGAACTGTATTATCAATATTGTCAAATTGGCACCTA CTACTGTAGACTTATGGTTTCTAAAAATATACCAGTACGACGTAGGTCCT TTTCTCCACATCAAACGTCCTTTTCTAGTGTTAACTCTTGTGTTAACGTT CGAAAGTGAGATATGTGTCGTACCTTGTGAACACCA
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Coding sequence (CDS) from alignment at F-serratus_M_contig139:407520..410405-

>mRNA_F-serratus_M_contig139.2808.1 ID=mRNA_F-serratus_M_contig139.2808.1|Name=mRNA_F-serratus_M_contig139.2808.1|organism=Fucus serratus male|type=CDS|length=1620bp|location=Sequence derived from alignment at F-serratus_M_contig139:407520..410405- (Fucus serratus male)
ATGACGCTACGGTCGTTATTTCAACGGAATCTTGTGCACGTGGAGGCTGG
CATTAAATTTTCTAGTGGTACCATGGCCGCCGTAGTAGGTGATCCCTGCA
GCTCCCGAAGACGAACCAGAACGTACAGCAGCACAAGCCGGTTGCACAAC
TATTTGCCCATGGTCCTGGAGACGACCCCGAGGGGAGAGCGTGCGTACGA
CATCTACTCCAGGCTTCTCAGGATGACGCTACGGTCGTTATTTCAACGGA
ATCTTGTGCACGTGGAGGCTGGCATTAAATTTTCTAGTGGTACCATGGCC
GCCGTAGTAGGTGATCCCTGCAGCTCCCGAAGACGAACCAGAACGTACAG
CAGCACAAGCCGGTTGCACAACTATTTGCCCATGGTCCTGGAGACGACCC
CGAGGGGAGAGCGTGCGTACGACATCTACTCCAGGCTTCTCAGGGAAAGG
ATCATATGTTTGCATGGGCCCATCACAGAGCAGATGTCGTCGCTGGTAAC
AGCACAGCTCCTGTTCCTAGAATCAGAAGACCCCGTGAAACCCATCAACA
TGTACATAAACAGGAAAGGATCATATGTTTGCATGGGCCCATCACAGAGC
AGATGTCGTCGCTGGTAACAGCACAGCTCCTGTTCCTAGAATCAGAAGAC
CCCGTGAAACCCATCAACATGTACATAAACAGTCCTGGCGGCATCGTAAC
AGCGGGTTTGGCGGTGTACGACACGATGCAGTATGTCGGCCCAGAGATAT
GTACAATTTGTATGGGGCAGGCTGCGTCTATGGGATCATTGCTCCTGACC
GCGGGGACACCGAACATGCGTTTCATCTTACCCAACGCGAAGGCGAGAGA
GAGAGGGCAAAGGAGGGGAGGGGAGAGGAAGGGAGGCTCCTGGCGGCATC
GTAACAGCGGGTTTGGCGGTGTACGACACGATGCAGTATGTCGGCCCAGA
GATATGTACAATTTGTATGGGGCAGGCTGCGTCTATGGGATCATTGCTCC
TGACCGCGGGGACACCGAACATGCGTTTCATCTTACCCAACGCGAAGGCG
AGAGAGAGAGGGCAAAGGAGGGGAGGGGAGAGGAAGGGAGGCGTTATGTT
GCATCAGCCTTCCGGTGGGGCGAGCGGGATGGCGGCCGACATCGCAATCG
TGGCGGAGGAAATCATCAAGACTAGATCGCGCCTGAACGAGATATATGCC
CAACATTCGGGGCGGGTTATGTTGCATCAGCCTTCCGGTGGGGCGAGCGG
GATGGCGGCCGACATCGCAATCGTGGCGGAGGAAATCATCAAGACTAGAT
CGCGCCTGAACGAGATATATGCCCAACATTCGGGGCGGGAGGTTGTGGAA
ATCGCGAAGGTGATGGATCGCGACTTCTACATGACCGCTCAGGAAGCGAT
CGACTTTGGCGTTGTTGATAAGATAATTACGAAGCGACCGAAAGAGCAAG
TGGGTTCCGAAGACGAACCAAGGGCGTAGGAGGTTGTGGAAATCGCGAAG
GTGATGGATCGCGACTTCTACATGACCGCTCAGGAAGCGATCGACTTTGG
CGTTGTTGATAAGATAATTACGAAGCGACCGAAAGAGCAAGTGGGTTCCG
AAGACGAACCAAGGGCGTAG
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