mRNA_F-serratus_M_contig1386.2786.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1386.2786.1
Unique NamemRNA_F-serratus_M_contig1386.2786.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1386.2786.1 vs. uniprot
Match: D7FGZ9_ECTSI (DNA repair protein RAD52 homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGZ9_ECTSI)

HSP 1 Score: 274 bits (700), Expect = 5.790e-78
Identity = 139/186 (74.73%), Postives = 156/186 (83.87%), Query Frame = 3 
Query:   42 YTSERQGASGQGAQWIFGSSKFSDEDHARIQEALNTALSWDQINSRQGCGGKKVHYLAGHTVVENANKIFGFNGWDSSILHLSVDYVEKTSDGK-WTAAATAIVRVALKNGVGHEDVGNAHLKDRDKGEVLERAKKAAVTDATKRALRLFGHHLGGNMSNKEGLKDVERNHKQDQRALKARQGHES 596
            Y +ERQGASGQGAQWIFG+ KFSDEDHARIQ+ALNTALSWDQINSR G GGKKV YLAGHTV+ENANK+FGF GWDSSILHLS+DY  K+ DG+ W A ATAIVR+ + NG GHEDVGN+H+KD+DKGEVL R KKAAVTDA KRALRLFG  LG  M +KEGLK+ E  HKQ+QR LKA Q  E+
Sbjct:    6 YNAERQGASGQGAQWIFGTDKFSDEDHARIQQALNTALSWDQINSRPGGGGKKVPYLAGHTVIENANKVFGFAGWDSSILHLSLDY--KSEDGRFWMAGATAIVRITVANGCGHEDVGNSHMKDKDKGEVLSRVKKAAVTDAKKRALRLFGTQLGSQMMDKEGLKETEITHKQNQRELKANQQREA 189
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BLAST of mRNA_F-serratus_M_contig1386.2786.1 vs. uniprot
Match: A0A6H5K4D8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4D8_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 4.500e-42
Identity = 75/87 (86.21%), Postives = 80/87 (91.95%), Query Frame = 3 
Query:   42 YTSERQGASGQGAQWIFGSSKFSDEDHARIQEALNTALSWDQINSRQGCGGKKVHYLAGHTVVENANKIFGFNGWDSSILHLSVDYV 302
            Y +ERQG SGQGAQWIFG+ KFSDEDHARIQEALNTALSWDQINSR G GGKKV YLAGHTV+ENANK+FGF GWDSSILHLS+DYV
Sbjct:    6 YNAERQGTSGQGAQWIFGTDKFSDEDHARIQEALNTALSWDQINSRPGGGGKKVPYLAGHTVIENANKVFGFAGWDSSILHLSLDYV 92
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BLAST of mRNA_F-serratus_M_contig1386.2786.1 vs. uniprot
Match: UPI000644DBF2 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI000644DBF2)

HSP 1 Score: 134 bits (336), Expect = 4.670e-32
Identity = 65/149 (43.62%), Postives = 97/149 (65.10%), Query Frame = 3 
Query:   87 IFGSSKFSDEDHARIQEALNTALSWDQINSRQGCGGKKVHYLAGHTVVENANKIFGFNGWDSSILHLSVDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKDRDKGEVLERAKKAAVTDATKRALRLFGHHLGGNMSNKEGLK 533
            +FG+  ++ E+  R+   L+T L  D  + R G GG ++ YL     +E AN++FGFNGW S I+ L++D+ E    GKW A A+AI+R+ LK+G  H+DVG    +D +KG  +E AKK AV+DA KR+LR+FG+ LG  + +K+ LK
Sbjct:    8 LFGNESYTQEEIERLAIELSTPLPRDDQSERPGPGGTRLTYLESWKAIEIANRVFGFNGWSSRIVELTLDFCEVAPSGKWRAGASAIIRIMLKDGTFHDDVGFGMREDSNKGTSIEHAKKEAVSDARKRSLRVFGNALGNKLYDKDPLK 156
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BLAST of mRNA_F-serratus_M_contig1386.2786.1 vs. uniprot
Match: A0A024THR9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024THR9_9STRA)

HSP 1 Score: 135 bits (341), Expect = 2.020e-30
Identity = 71/158 (44.94%), Postives = 100/158 (63.29%), Query Frame = 3 
Query:   78 AQWIFGSSKFSDEDHARIQEALNTALSWDQINSRQGCGGKKVHYLAGHTVVENANKIFGFNGWDSSILHLSVDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKD-RDKGEVLERAKKAAVTDATKRALRLFGHHLGGNMSNKEGLKDVERN 548
            A  IFGS  F+ +D  R    L   L+ + ++ R G GG+++ YL     +E AN+ FGFNGW   I+  +V+  EKT DGKWT   +++VR+ LK+G  HEDVG    +  +D G  LE+AKKA+++DA KRALRLFG +LG +  +KE +KDV  N
Sbjct:    7 ANSIFGSVPFNPDDQQRTDAYLRQKLNANFLSRRPGPGGRRLTYLESCKAIEIANEAFGFNGWSCRIVDCNVECKEKTDDGKWTVIYSSVVRIELKDGASHEDVGFGQSEGMKDLGAALEQAKKASISDARKRALRLFGEYLGNSCYDKEHIKDVAAN 164
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BLAST of mRNA_F-serratus_M_contig1386.2786.1 vs. uniprot
Match: A0A8H3YIV5_VENIN (Uncharacterized protein n=1 Tax=Venturia inaequalis TaxID=5025 RepID=A0A8H3YIV5_VENIN)

HSP 1 Score: 134 bits (336), Expect = 2.520e-29
Identity = 67/148 (45.27%), Postives = 98/148 (66.22%), Query Frame = 3 
Query:   99 SKFSDEDHARIQEALNTALSWDQINSRQGCGGKKVHYLAGHTVVENANKIFGFNGWDSSILHLSVDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKDRD-KGEVLERAKKAAVTDATKRALRLFGHHLGGNMSNKEGLKDV 539
            S++S ++ A++Q  L+  L  + I+SRQG GG KVHYLA   V+  AN++FGFNGW S I  +++DYV+   DG+ T   + IVR+ L++G  HED+G   +K+ + KG   E+AKK A TDA KRALR FG+ LG  + +K  L+ +
Sbjct:  204 SEYSAQEIAQLQSRLDKQLGPEYISSRQGPGGGKVHYLAAEKVINLANEVFGFNGWSSEIKDVTIDYVDVEKDGRITMGCSIIVRITLRDGTHHEDIGYGEIKNANGKGAAFEKAKKEAATDAVKRALRTFGNVLGNCLYDKSYLQKI 351
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BLAST of mRNA_F-serratus_M_contig1386.2786.1 vs. uniprot
Match: A0A5J5EZ93_9PEZI (Uncharacterized protein n=1 Tax=Sphaerosporella brunnea TaxID=1250544 RepID=A0A5J5EZ93_9PEZI)

HSP 1 Score: 133 bits (334), Expect = 3.540e-29
Identity = 66/149 (44.30%), Postives = 94/149 (63.09%), Query Frame = 3 
Query:   99 SKFSDEDHARIQEALNTALSWDQINSRQGCGGKKVHYLAGHTVVENANKIFGFNGWDSSILHLSVDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKDRDKGEVLERAKKAAVTDATKRALRLFGHHLGGNMSNKEGLKDVER 545
            S ++  D A +Q  L+  L  + I+SR G GGKKVHY+     +  AN++FGFNGW SSI ++ VD++++  DGKW+   +  VRV LK+G  HEDVG   +++  K +V E+AKK   TD  KRALR FG+ LG  + +KE L  + R
Sbjct:   15 SPYTAIDIATLQAKLDQQLGPEFISSRPGAGGKKVHYIQADKCINLANQVFGFNGWSSSITNMEVDFLDQGKDGKWSVGISVTVRVTLKDGTYHEDVGYGQMENGKKAQVFEKAKKEGTTDGLKRALRSFGNVLGNCLYDKEYLAKISR 163
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BLAST of mRNA_F-serratus_M_contig1386.2786.1 vs. uniprot
Match: A0A8H3V3B0_VENIN (Uncharacterized protein n=2 Tax=Venturia inaequalis TaxID=5025 RepID=A0A8H3V3B0_VENIN)

HSP 1 Score: 134 bits (336), Expect = 5.520e-29
Identity = 67/148 (45.27%), Postives = 98/148 (66.22%), Query Frame = 3 
Query:   99 SKFSDEDHARIQEALNTALSWDQINSRQGCGGKKVHYLAGHTVVENANKIFGFNGWDSSILHLSVDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKDRD-KGEVLERAKKAAVTDATKRALRLFGHHLGGNMSNKEGLKDV 539
            S++S ++ A++Q  L+  L  + I+SRQG GG KVHYLA   V+  AN++FGFNGW S I  +++DYV+   DG+ T   + IVR+ L++G  HED+G   +K+ + KG   E+AKK A TDA KRALR FG+ LG  + +K  L+ +
Sbjct:   26 SEYSAQEIAQLQSRLDKQLGPEYISSRQGPGGGKVHYLAAEKVINLANEVFGFNGWSSEIKDVTIDYVDVEKDGRITMGCSIIVRITLRDGTHHEDIGYGEIKNANGKGAAFEKAKKEAATDAVKRALRTFGNVLGNCLYDKSYLQKI 173
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BLAST of mRNA_F-serratus_M_contig1386.2786.1 vs. uniprot
Match: A0A151Z3N0_9MYCE (DNA repair and recombination protein n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z3N0_9MYCE)

HSP 1 Score: 127 bits (319), Expect = 9.530e-29
Identity = 70/162 (43.21%), Postives = 96/162 (59.26%), Query Frame = 3 
Query:   57 QGASGQGAQ-WIFGSSKFSDEDHARIQEALNTALSWDQINSRQGCGGKKVHYLAGHTVVENANKIFGFNGWDSSILHLSVDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKDRDKGEVLERAKKAAVTDATKRALRLFGHHLGGNMSNKEGLKDV 539
            QG  GQ  Q ++FG + F++E+  RI   L   ++ D +  R G GG ++ YL  + V+  AN IFGFNGW S+I  L  D+VE T  GK+    TAIVR+ LK+G   ED+G     +  KG  +  AKK AV+DA KRA RLFG+ LG  + +KE  K +
Sbjct:   13 QGGVGQSVQEFLFGKTPFTEEEFNRISNELKKHVADDDVAVRPGPGGTQLAYLETYKVINFANAIFGFNGWSSTITELQADFVENTGSGKFRVGVTAIVRITLKDGTMREDIGYGSHDNPSKGMAICNAKKEAVSDAHKRAFRLFGNGLGNFLYDKEIQKSI 174
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BLAST of mRNA_F-serratus_M_contig1386.2786.1 vs. uniprot
Match: A0A6A6PBY2_9PEZI (Uncharacterized protein (Fragment) n=1 Tax=Lineolata rhizophorae TaxID=578093 RepID=A0A6A6PBY2_9PEZI)

HSP 1 Score: 124 bits (312), Expect = 1.530e-28
Identity = 66/148 (44.59%), Postives = 92/148 (62.16%), Query Frame = 3 
Query:   99 SKFSDEDHARIQEALNTALSWDQINSRQGCGGKKVHYLAGHTVVENANKIFGFNGWDSSILHLSVDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKD-RDKGEVLERAKKAAVTDATKRALRLFGHHLGGNMSNKEGLKDV 539
            S+++ ++ A +Q  L+  L  + INSR G GG KVHYL     +  AN++ GFNGW SSI  + VD+V+    GK +   + IVRV LK+G  HED+G  H+++ R K    E+AKK A TDA KRALR FG+ LG  + +K+ L  V
Sbjct:   47 SEYTPQEIATLQSRLHKQLGPEYINSRPGQGGGKVHYLKAEKAINLANEVLGFNGWSSSIQQVQVDFVDVHDGGKVSMGMSIIVRVTLKDGTFHEDIGYGHIENCRGKAAAFEKAKKEAATDALKRALRTFGNVLGNCLYDKDYLNRV 194
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BLAST of mRNA_F-serratus_M_contig1386.2786.1 vs. uniprot
Match: A0A517LLL4_9PEZI (Uncharacterized protein n=1 Tax=Venturia effusa TaxID=50376 RepID=A0A517LLL4_9PEZI)

HSP 1 Score: 132 bits (332), Expect = 1.850e-28
Identity = 66/148 (44.59%), Postives = 98/148 (66.22%), Query Frame = 3 
Query:   99 SKFSDEDHARIQEALNTALSWDQINSRQGCGGKKVHYLAGHTVVENANKIFGFNGWDSSILHLSVDYVEKTSDGKWTAAATAIVRVALKNGVGHEDVGNAHLKDRD-KGEVLERAKKAAVTDATKRALRLFGHHLGGNMSNKEGLKDV 539
            S+++ ++ A++Q  L+  L  + I+SRQG GG KVHYLA   V+  AN++FGFNGW S I  +++DYV+   DG+ T   + IVR+ L++G  HED+G   +K+ + KG   E+AKK A TDA KRALR FG+ LG  + +K  L+ +
Sbjct:   26 SEYTAQEIAQLQSRLDKQLGPEYISSRQGPGGGKVHYLAAEKVINLANEVFGFNGWSSEIKDVTIDYVDIEKDGRITMGCSIIVRITLRDGTHHEDIGYGEIKNANGKGAAFEKAKKEAATDAVKRALRTFGNVLGNCLYDKSYLQKI 173
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1386.2786.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FGZ9_ECTSI5.790e-7874.73DNA repair protein RAD52 homolog n=1 Tax=Ectocarpu... [more]
A0A6H5K4D8_9PHAE4.500e-4286.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000644DBF24.670e-3243.62hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
A0A024THR9_9STRA2.020e-3044.94Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A8H3YIV5_VENIN2.520e-2945.27Uncharacterized protein n=1 Tax=Venturia inaequali... [more]
A0A5J5EZ93_9PEZI3.540e-2944.30Uncharacterized protein n=1 Tax=Sphaerosporella br... [more]
A0A8H3V3B0_VENIN5.520e-2945.27Uncharacterized protein n=2 Tax=Venturia inaequali... [more]
A0A151Z3N0_9MYCE9.530e-2943.21DNA repair and recombination protein n=1 Tax=Tiegh... [more]
A0A6A6PBY2_9PEZI1.530e-2844.59Uncharacterized protein (Fragment) n=1 Tax=Lineola... [more]
A0A517LLL4_9PEZI1.850e-2844.59Uncharacterized protein n=1 Tax=Venturia effusa Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1386contigF-serratus_M_contig1386:193705..198434 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score278.1
Seed ortholog evalue9.4e-72
Seed eggNOG ortholog2880.D7FGZ9
Preferred nameRAD52
KEGG koko:K01288,ko:K10873
KEGG Pathwayko03440,map03440
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000018,GO:0000150,GO:0000228,GO:0000278,GO:0000280,GO:0000709,GO:0000722,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000727,GO:0000729,GO:0000730,GO:0000733,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003697,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006275,GO:0006277,GO:0006281,GO:0006282,GO:0006301,GO:0006302,GO:0006310,GO:0006312,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007049,GO:0007127,GO:0007131,GO:0007530,GO:0007531,GO:0007533,GO:0008150,GO:0008152,GO:0008156,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010520,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010639,GO:0010792,GO:0010946,GO:0010947,GO:0010948,GO:0016043,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0022402,GO:0022413,GO:0022414,GO:0022607,GO:0030154,GO:0031297,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031974,GO:0031981,GO:0032200,GO:0032392,GO:0032502,GO:0032505,GO:0032991,GO:0032993,GO:0033043,GO:0033260,GO:0033554,GO:0034599,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035825,GO:0035861,GO:0040020,GO:0042221,GO:0042592,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043392,GO:0043933,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044464,GO:0044786,GO:0045002,GO:0045003,GO:0045005,GO:0045027,GO:0045128,GO:0045165,GO:0045786,GO:0045835,GO:0045910,GO:0045934,GO:0046483,GO:0048285,GO:0048519,GO:0048523,GO:0048583,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051259,GO:0051260,GO:0051276,GO:0051321,GO:0051445,GO:0051447,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0060249,GO:0060255,GO:0060631,GO:0061982,GO:0065003,GO:0065004,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070887,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071897,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0090329,GO:0090734,GO:0090735,GO:0097159,GO:0097617,GO:0110026,GO:0110027,GO:0110029,GO:0140013,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902298,GO:1902969,GO:1903046,GO:1903047,GO:1990426,GO:1990505,GO:1990814,GO:2000104,GO:2000112,GO:2000113,GO:2000241,GO:2000242,GO:2000819,GO:2001020
EggNOG free text desc.double-strand break repair via single-strand annealing
EggNOG OGsCOG5055@1,KOG4141@2759
EC3.4.16.6
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko03400
Exons7
Model size2726
Cds size1743
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929363.2469757-UTR-F-serratus_M_contig1386:193704..1937331622929363.2469757-UTR-F-serratus_M_contig1386:193704..193733Fucus serratus maleUTRF-serratus_M_contig1386 193705..193733 +
1690962817.028543-UTR-F-serratus_M_contig1386:193704..1937331690962817.028543-UTR-F-serratus_M_contig1386:193704..193733Fucus serratus maleUTRF-serratus_M_contig1386 193705..193733 +
1622929363.3625271-UTR-F-serratus_M_contig1386:197480..1984341622929363.3625271-UTR-F-serratus_M_contig1386:197480..198434Fucus serratus maleUTRF-serratus_M_contig1386 197481..198434 +
1690962817.1254125-UTR-F-serratus_M_contig1386:197480..1984341690962817.1254125-UTR-F-serratus_M_contig1386:197480..198434Fucus serratus maleUTRF-serratus_M_contig1386 197481..198434 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929363.2603207-CDS-F-serratus_M_contig1386:193733..1938411622929363.2603207-CDS-F-serratus_M_contig1386:193733..193841Fucus serratus maleCDSF-serratus_M_contig1386 193734..193841 +
1690962817.0413811-CDS-F-serratus_M_contig1386:193733..1938411690962817.0413811-CDS-F-serratus_M_contig1386:193733..193841Fucus serratus maleCDSF-serratus_M_contig1386 193734..193841 +
1622929363.271323-CDS-F-serratus_M_contig1386:194387..1944501622929363.271323-CDS-F-serratus_M_contig1386:194387..194450Fucus serratus maleCDSF-serratus_M_contig1386 194388..194450 +
1690962817.0526328-CDS-F-serratus_M_contig1386:194387..1944501690962817.0526328-CDS-F-serratus_M_contig1386:194387..194450Fucus serratus maleCDSF-serratus_M_contig1386 194388..194450 +
1622929363.2848954-CDS-F-serratus_M_contig1386:194759..1948581622929363.2848954-CDS-F-serratus_M_contig1386:194759..194858Fucus serratus maleCDSF-serratus_M_contig1386 194760..194858 +
1690962817.0664551-CDS-F-serratus_M_contig1386:194759..1948581690962817.0664551-CDS-F-serratus_M_contig1386:194759..194858Fucus serratus maleCDSF-serratus_M_contig1386 194760..194858 +
1622929363.304067-CDS-F-serratus_M_contig1386:195328..1954751622929363.304067-CDS-F-serratus_M_contig1386:195328..195475Fucus serratus maleCDSF-serratus_M_contig1386 195329..195475 +
1690962817.0784416-CDS-F-serratus_M_contig1386:195328..1954751690962817.0784416-CDS-F-serratus_M_contig1386:195328..195475Fucus serratus maleCDSF-serratus_M_contig1386 195329..195475 +
1622929363.3185632-CDS-F-serratus_M_contig1386:195741..1958191622929363.3185632-CDS-F-serratus_M_contig1386:195741..195819Fucus serratus maleCDSF-serratus_M_contig1386 195742..195819 +
1690962817.0903614-CDS-F-serratus_M_contig1386:195741..1958191690962817.0903614-CDS-F-serratus_M_contig1386:195741..195819Fucus serratus maleCDSF-serratus_M_contig1386 195742..195819 +
1622929363.3327916-CDS-F-serratus_M_contig1386:196036..1970021622929363.3327916-CDS-F-serratus_M_contig1386:196036..197002Fucus serratus maleCDSF-serratus_M_contig1386 196037..197002 +
1690962817.0995266-CDS-F-serratus_M_contig1386:196036..1970021690962817.0995266-CDS-F-serratus_M_contig1386:196036..197002Fucus serratus maleCDSF-serratus_M_contig1386 196037..197002 +
1622929363.3462791-CDS-F-serratus_M_contig1386:197198..1974801622929363.3462791-CDS-F-serratus_M_contig1386:197198..197480Fucus serratus maleCDSF-serratus_M_contig1386 197199..197480 +
1690962817.1098146-CDS-F-serratus_M_contig1386:197198..1974801690962817.1098146-CDS-F-serratus_M_contig1386:197198..197480Fucus serratus maleCDSF-serratus_M_contig1386 197199..197480 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1386.2786.1prot_F-serratus_M_contig1386.2786.1Fucus serratus malepolypeptideF-serratus_M_contig1386 193734..197480 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1386.2786.1

>prot_F-serratus_M_contig1386.2786.1 ID=prot_F-serratus_M_contig1386.2786.1|Name=mRNA_F-serratus_M_contig1386.2786.1|organism=Fucus serratus male|type=polypeptide|length=581bp
MEAPYTSERQGASGQGAQWIFGSSKFSDEDHARIQEALNTALSWDQINSR
QGCGGKKVHYLAGHTVVENANKIFGFNGWDSSILHLSVDYVEKTSDGKWT
AAATAIVRVALKNGVGHEDVGNAHLKDRDKGEVLERAKKAAVTDATKRAL
RLFGHHLGGNMSNKEGLKDVERNHKQDQRALKARQGHESAGRSAHASPQQ
QQQAQQKQNSYPLQKSHHEQQQGLQHQQQQPIRASKVETSREGRGAGHRT
PPVLVGPDCVQTEPGSRMNHDARQLPPRPLVPLQSRQQPLSPRQQQHQNQ
QQHQQQRHQEQPQGAANMCGAPPENPRNPATPSSVVGAVSRVSNSSPRLR
PRGGSGGQLAHSGVSKPISSETTPATLGRTFCESSSNAGFLPAAIDGVGP
RELPVDGRGSGSGRLSSGNPGGAGGVGEGPIFLHSNSPVFEYPVGGGRTG
SSSATAPATRPVGSTSGRAAAGTVAGKGVEDDFGLSQDYASAFLEIDSAI
QRHTTSLSSGSCQSVGSAVGTNIENDKMPPRRQSSGAGGVYGGGGGGGHV
VGERSGGHTIQQGQLAGNKRFREQSSCERA*
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mRNA from alignment at F-serratus_M_contig1386:193705..198434+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1386.2786.1 ID=mRNA_F-serratus_M_contig1386.2786.1|Name=mRNA_F-serratus_M_contig1386.2786.1|organism=Fucus serratus male|type=mRNA|length=4730bp|location=Sequence derived from alignment at F-serratus_M_contig1386:193705..198434+ (Fucus serratus male)
ACTGGGGCTCTTCCTCTAGTGCCTTGGCCATGGAAGCTCCTTACACCTCG
GAGCGCCAGGGAGCGTCGGGTCAGGGTGCACAGTGGATTTTCGGATCTAG
TAAATTTTCGGACGAGGACCACGCCAGGATCCAGGAGGTGATCTGAAGAA
TCGCCCGTTATAAATTTCATTCGCGATCGGTACTCGGCAGCTTGCAGATA
AGCTTTTGATTCCGCATACTTTTTGCGGCCAAATCCATCACCCATAACTC
TTTAGTCGGGCTGAGCAGATCGATTGATTCTGTCCTACCGAGAGCGTTCA
ACTTCCGAAACGAAGGAAGCAGACGCGAGTACTTGTGTTATTTAAAGGGG
ACTATTTGTGCAAGTACCATTAATATACATACCAGTATTTAAGTACGAGG
TACATGTTTGAGTAGTTAGTCCTACTTGAACGAATTAGTAACCCACCTAC
CTGGTACTTGTAAACGTTTTGACTGCTCAGAAGGTCTAGATGCGATCATA
TTTTTCTTTAAACTGGTGCCTGATATTCCCGACTTCGTTTTTGCGAGTCA
GCTAAACATGGAACGTCGTAGACATCTATGCAGCCGTCTCAAGACGGATG
ATTCCACAACACGTCCGCGATGATATTCTGCATTCGACCTGTTGATGAAC
AGCATCAAACCTTGTTTCGTCCCCTCAACACAGGCGCTGAACACGGCCTT
GAGCTGGGATCAGATCAACTCCAGACAAGGCTGCGGCGGGAAGAAGGTCA
GTACAACGAGCACGTGCTCAACCGCTTCACTTTCCCTAGACTCTCCTCGT
TTCAGGGGGCACCAGCACATAATAGCTGTTGCCGGTAAACCACTTGAAAG
TTATGACAATGATTGCATTTTGAGTCGTTCAAAACTTGTATCTATAGACT
AGAAGAGGGGCTAATGTAACAAATTAAGTAGTGTCGATGGGATAGAAATC
ATACTGGGGTGCTTTTCTCAGACGCCGCGTTGATGAATCGGTGCTGAAAT
GCCTCCGCCCCATGAACTTTCACAACGTCTCATCCTCCGCACAAAAAAAA
CGAAGGTTCACTACCTCGCCGGACATACGGTGGTCGAAAATGCCAACAAG
ATATTCGGCTTTAACGGTTGGGACTCTTCCATCCTCCATTTAAGCGTCGA
CTACGTAAGTTTTTGGGGTGTGGTGGTTGCCTTCGAAGCTTCCCCGCGTA
GGGAAGGAGGGGCGGATAAGCTGTGGACACGACCTTCCTTGCGAGGGCTG
GCTGCCCATGTCTTTCGTATCGAGATGACAATTATCGTCACGAGGAATAC
AGTGCAGGCGTGTGACCACCCCTTGATTGTACAATGGCCGTCGTACCGTC
AGCTTCGGGCGATAATTTGGCCCGTAGTCTCGAACCTCACGTGGTGTACG
TAGAGCACATAACTCACGGACGGTCAAATGTAGTCCTTTTCGTACAAACG
AAGGCCACCGAGAAATTGCGTATGCTCCGTCTTGAGGCTCCACGAGATTA
TTTATTCTGCCTTCTTGTGAGGCAGGGAGAAATGCTGTATGCGTAGAAAT
CTGTCCATCGCGACCCTCTAGAGCCAGAGCATGTCGAATTCACAACGACG
AGCCCCACGCGCGCACGAGCTCAGGTGGAGAAAACTTCGGACGGAAAGTG
GACCGCTGCCGCGACGGCCATCGTGAGGGTGGCGCTGAAGAACGGCGTCG
GACACGAGGACGTTGGCAACGCGCACCTCAAGGACAGGGACAAAGGAGAA
GTTCTCGAGAGGGCCAAAAAGGTGGGGTGGTTGCCGTTTCTCCCGATCCC
CGGGGCAAAAAAATGCCTTCTGCAGCTTCTGCTGTTTTACGTCGCTTTTG
GTTACAGGGATGAGGGAGAAATTTTCGAGAGGACCAGAAAGGTGGGGTGA
TTGCCGCTTTTCACGATTCCCCGGGTAAAACAATGCATAACAATGCCTTC
CGTAGTTTCTGCTGTTCTACGCCACTTTTGGCTGCACTTGCACGATGCCT
CGGCGACTGTCTTCGATCGCACGTGAAACGTTCTCAGGCTGCTGTAACCG
ATGCGACGAAGAGAGCGCTACGCCTGTTCGGACATCATCTCGGCGGGAAC
ATGTCAAACAAGGAGGTATAAAATAGGGCATGCTACTGGATGTTCGCTGG
AGTTGGCACACGTGTGTGCCGCGGCAATGGTAATTTTTACCTAAGAATTC
CCGTGGCGGGAGAGTAGCTTCGCTGCGCGTGATCGAGTGATCCGACTGAA
AATGACTCTACGTAAGTTTCCCCTTTCGCCAGCTGAAGCGCGCGTCCTGG
ACGTGCGTGGCATTATATCGCTTCCCTACCAGGGACTGAAGGACGTGGAG
CGCAATCATAAGCAAGACCAACGCGCGCTTAAGGCACGTCAGGGGCATGA
ATCGGCGGGCCGTTCGGCCCACGCGTCGCCACAGCAGCAGCAGCAGGCGC
AGCAAAAACAGAATTCTTACCCGCTCCAGAAAAGTCACCACGAACAGCAA
CAAGGACTGCAACACCAGCAGCAACAACCCATCCGCGCGAGCAAGGTAGA
AACATCGCGGGAGGGGAGGGGGGCTGGACACAGGACTCCGCCGGTTCTTG
TGGGACCCGATTGCGTCCAGACTGAGCCAGGTTCGCGGATGAATCACGAT
GCCCGTCAGCTGCCGCCACGACCACTTGTCCCGCTGCAATCAAGACAACA
ACCGCTATCACCGCGGCAGCAGCAACATCAAAATCAACAACAACATCAAC
AACAGAGACATCAAGAACAGCCTCAAGGGGCTGCCAACATGTGTGGCGCT
CCTCCCGAAAATCCGCGCAATCCCGCAACACCATCTTCCGTCGTCGGTGC
CGTCAGTCGCGTAAGCAATTCGTCGCCGCGATTACGACCACGGGGTGGTA
GTGGTGGTCAACTCGCGCATTCCGGTGTATCGAAGCCAATATCGTCGGAA
ACAACGCCGGCGACACTTGGCCGTACCTTCTGCGAGTCTTCTTCAAATGC
AGGTTTCCTTCCTGCCGCAATCGACGGAGTTGGCCCAAGGGAATTACCGG
TCGATGGACGCGGAAGCGGCAGCGGTAGACTCTCCAGCGGTAACCCTGGA
GGAGCTGGAGGAGTAGGAGAAGGACCAATATTCCTCCACAGCAACAGCCC
GGTGTTCGAGTACCCTGTAGGTGGGGGTCGGACGGGGAGTTCTTCGGCCA
CGGCCCCAGCAACAAGACCCGTGGGTTCTACCTCCGGCCGGGCGGCAGCG
GGTACGGTCGCAGGGAAAGGAGTGGAGGATGACTTCGGCCTGTCGCAGGT
AAGGACTGGCCATGCTGGAGGACATATACCCGGTCTCCCCATTTAGGCGA
AATTCTTGGAGGAGCATGCGCACCAGTGGAAGAAGAAAGGCGGGAGGGAC
CAAACCTTCGCAGTGTGTGTTCCCATGCTGAGGAAGTCGCCCCTCCAGCT
TTTCCCTTGACACGTTTCCCTATTTTTTCACGCCGCCTTTGCAGGATTAC
GCCTCCGCTTTTTTGGAGATCGATTCAGCTATTCAGCGACATACCACGTC
GCTGTCTAGCGGTAGCTGCCAAAGTGTCGGCTCCGCTGTCGGCACTAATA
TTGAGAACGACAAGATGCCTCCACGGCGGCAATCTTCCGGGGCTGGGGGG
GTTTATGGTGGCGGAGGTGGAGGTGGTCACGTCGTTGGGGAGCGATCCGG
CGGGCATACGATACAACAGGGTCAGCTAGCGGGAAACAAGAGGTTTCGCG
AACAGTCCAGCTGCGAACGGGCGTAGCGTGGATTGCTCTTCGCTAATTTT
TTCCACGCTAGCATGTAGCGTGCGGGACGTTTGCCGTTTAGAAGATGTGA
GTGGGTTGCCACTCCACGGATGCGCCAGTGTGAGGTCGTACGTTTTACCT
TTCCTCTCTCACATGTGACGCTCGTCCCGAGAAATCGTCTGCGTTACAGT
AGGAGTACAATGCCGGTCTGCCACAGCACACAATCGACATAAAAAGAGAC
TCTACTAATTTTATACTCCGTAGTTGCTTTACGGCGTAAGAGTGTGCAGC
CCATTCTTATGCCGTGTTGTATATTCTGATGAGGCCCGTCTTTTTTCGTC
TTTTTATGAGTCGTTGGAGTTCTCCGCTCCGAGAGAGAGCGTGACGATTT
CGTCGCCCGCAACGGGCGTGATCTCTCCATCGGTTGGTTCGTGACAAAAC
GTTATTTGCACGCCTCTGGAAGAGAACCTCGTGATTAATCAACTTTTATA
TGTGTAAGCCGTTTAACTACTGCGTCCAGCTTCCAGCTTTTCTTTTGCCT
CGGCTGTTACAAGATCCGGCAAAAGTTCCAACCACAGAATTTTCGCAGAA
TGTTCGCCGGGCGAGGGTGGGCGGTGGCGCGAGACGGTTTTTGCAGACAT
CGTGATGAAAAGGAACTCTTTTGCCACCCACCAAAAGGCGATTGATGTAG
ACTAAGTGTACAGGATAACGGTGGGTTTCTCCCCGACATTATACTGTCTG
TTGACCTTATGCTACGACCATCGGGGAATCCAATTAAATGTCGTGAGAGT
TTTTGTCGTTACAGCCTAAGTTCCCGCATAAACGTTTTGAACCCCCCCTT
AAACCTCATTGGGTGGATGCCCAGAATTATAAAGGCTAAGGTTTAGATGG
GTTCAGAGTTTTTTTTTAATTAAACTATCCGCTGGAGTATTTTATCTTGT
AGAGCAAAAAAATACGTAAATATCGCGAAG
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Coding sequence (CDS) from alignment at F-serratus_M_contig1386:193705..198434+

>mRNA_F-serratus_M_contig1386.2786.1 ID=mRNA_F-serratus_M_contig1386.2786.1|Name=mRNA_F-serratus_M_contig1386.2786.1|organism=Fucus serratus male|type=CDS|length=3486bp|location=Sequence derived from alignment at F-serratus_M_contig1386:193705..198434+ (Fucus serratus male)
ATGGAAGCTCCTTACACCTCGGAGCGCCAGGGAGCGTCGGGTCAGGGTGC
ACAGTGGATTTTCGGATCTAGTAAATTTTCGGACGAGGACCACGCCAGGA
TCCAGGAGATGGAAGCTCCTTACACCTCGGAGCGCCAGGGAGCGTCGGGT
CAGGGTGCACAGTGGATTTTCGGATCTAGTAAATTTTCGGACGAGGACCA
CGCCAGGATCCAGGAGGCGCTGAACACGGCCTTGAGCTGGGATCAGATCA
ACTCCAGACAAGGCTGCGGCGGGAAGAAGGCGCTGAACACGGCCTTGAGC
TGGGATCAGATCAACTCCAGACAAGGCTGCGGCGGGAAGAAGGTTCACTA
CCTCGCCGGACATACGGTGGTCGAAAATGCCAACAAGATATTCGGCTTTA
ACGGTTGGGACTCTTCCATCCTCCATTTAAGCGTCGACTACGTTCACTAC
CTCGCCGGACATACGGTGGTCGAAAATGCCAACAAGATATTCGGCTTTAA
CGGTTGGGACTCTTCCATCCTCCATTTAAGCGTCGACTACGTGGAGAAAA
CTTCGGACGGAAAGTGGACCGCTGCCGCGACGGCCATCGTGAGGGTGGCG
CTGAAGAACGGCGTCGGACACGAGGACGTTGGCAACGCGCACCTCAAGGA
CAGGGACAAAGGAGAAGTTCTCGAGAGGGCCAAAAAGGTGGAGAAAACTT
CGGACGGAAAGTGGACCGCTGCCGCGACGGCCATCGTGAGGGTGGCGCTG
AAGAACGGCGTCGGACACGAGGACGTTGGCAACGCGCACCTCAAGGACAG
GGACAAAGGAGAAGTTCTCGAGAGGGCCAAAAAGGCTGCTGTAACCGATG
CGACGAAGAGAGCGCTACGCCTGTTCGGACATCATCTCGGCGGGAACATG
TCAAACAAGGAGGCTGCTGTAACCGATGCGACGAAGAGAGCGCTACGCCT
GTTCGGACATCATCTCGGCGGGAACATGTCAAACAAGGAGGGACTGAAGG
ACGTGGAGCGCAATCATAAGCAAGACCAACGCGCGCTTAAGGCACGTCAG
GGGCATGAATCGGCGGGCCGTTCGGCCCACGCGTCGCCACAGCAGCAGCA
GCAGGCGCAGCAAAAACAGAATTCTTACCCGCTCCAGAAAAGTCACCACG
AACAGCAACAAGGACTGCAACACCAGCAGCAACAACCCATCCGCGCGAGC
AAGGTAGAAACATCGCGGGAGGGGAGGGGGGCTGGACACAGGACTCCGCC
GGTTCTTGTGGGACCCGATTGCGTCCAGACTGAGCCAGGTTCGCGGATGA
ATCACGATGCCCGTCAGCTGCCGCCACGACCACTTGTCCCGCTGCAATCA
AGACAACAACCGCTATCACCGCGGCAGCAGCAACATCAAAATCAACAACA
ACATCAACAACAGAGACATCAAGAACAGCCTCAAGGGGCTGCCAACATGT
GTGGCGCTCCTCCCGAAAATCCGCGCAATCCCGCAACACCATCTTCCGTC
GTCGGTGCCGTCAGTCGCGTAAGCAATTCGTCGCCGCGATTACGACCACG
GGGTGGTAGTGGTGGTCAACTCGCGCATTCCGGTGTATCGAAGCCAATAT
CGTCGGAAACAACGCCGGCGACACTTGGCCGTACCTTCTGCGAGTCTTCT
TCAAATGCAGGTTTCCTTCCTGCCGCAATCGACGGAGTTGGCCCAAGGGA
ATTACCGGTCGATGGACGCGGAAGCGGCAGCGGTAGACTCTCCAGCGGTA
ACCCTGGAGGAGCTGGAGGAGTAGGAGAAGGACCAATATTCCTCCACAGC
AACAGCCCGGTGTTCGAGTACCCTGTAGGTGGGGGTCGGACGGGGAGTTC
TTCGGCCACGGCCCCAGCAACAAGACCCGTGGGTTCTACCTCCGGCCGGG
CGGCAGCGGGTACGGTCGCAGGGAAAGGAGTGGAGGATGACTTCGGCCTG
TCGCAGGGACTGAAGGACGTGGAGCGCAATCATAAGCAAGACCAACGCGC
GCTTAAGGCACGTCAGGGGCATGAATCGGCGGGCCGTTCGGCCCACGCGT
CGCCACAGCAGCAGCAGCAGGCGCAGCAAAAACAGAATTCTTACCCGCTC
CAGAAAAGTCACCACGAACAGCAACAAGGACTGCAACACCAGCAGCAACA
ACCCATCCGCGCGAGCAAGGTAGAAACATCGCGGGAGGGGAGGGGGGCTG
GACACAGGACTCCGCCGGTTCTTGTGGGACCCGATTGCGTCCAGACTGAG
CCAGGTTCGCGGATGAATCACGATGCCCGTCAGCTGCCGCCACGACCACT
TGTCCCGCTGCAATCAAGACAACAACCGCTATCACCGCGGCAGCAGCAAC
ATCAAAATCAACAACAACATCAACAACAGAGACATCAAGAACAGCCTCAA
GGGGCTGCCAACATGTGTGGCGCTCCTCCCGAAAATCCGCGCAATCCCGC
AACACCATCTTCCGTCGTCGGTGCCGTCAGTCGCGTAAGCAATTCGTCGC
CGCGATTACGACCACGGGGTGGTAGTGGTGGTCAACTCGCGCATTCCGGT
GTATCGAAGCCAATATCGTCGGAAACAACGCCGGCGACACTTGGCCGTAC
CTTCTGCGAGTCTTCTTCAAATGCAGGTTTCCTTCCTGCCGCAATCGACG
GAGTTGGCCCAAGGGAATTACCGGTCGATGGACGCGGAAGCGGCAGCGGT
AGACTCTCCAGCGGTAACCCTGGAGGAGCTGGAGGAGTAGGAGAAGGACC
AATATTCCTCCACAGCAACAGCCCGGTGTTCGAGTACCCTGTAGGTGGGG
GTCGGACGGGGAGTTCTTCGGCCACGGCCCCAGCAACAAGACCCGTGGGT
TCTACCTCCGGCCGGGCGGCAGCGGGTACGGTCGCAGGGAAAGGAGTGGA
GGATGACTTCGGCCTGTCGCAGGATTACGCCTCCGCTTTTTTGGAGATCG
ATTCAGCTATTCAGCGACATACCACGTCGCTGTCTAGCGGTAGCTGCCAA
AGTGTCGGCTCCGCTGTCGGCACTAATATTGAGAACGACAAGATGCCTCC
ACGGCGGCAATCTTCCGGGGCTGGGGGGGTTTATGGTGGCGGAGGTGGAG
GTGGTCACGTCGTTGGGGAGCGATCCGGCGGGCATACGATACAACAGGGT
CAGCTAGCGGGAAACAAGAGGTTTCGCGAACAGTCCAGCTGCGAACGGGC
GTAGGATTACGCCTCCGCTTTTTTGGAGATCGATTCAGCTATTCAGCGAC
ATACCACGTCGCTGTCTAGCGGTAGCTGCCAAAGTGTCGGCTCCGCTGTC
GGCACTAATATTGAGAACGACAAGATGCCTCCACGGCGGCAATCTTCCGG
GGCTGGGGGGGTTTATGGTGGCGGAGGTGGAGGTGGTCACGTCGTTGGGG
AGCGATCCGGCGGGCATACGATACAACAGGGTCAGCTAGCGGGAAACAAG
AGGTTTCGCGAACAGTCCAGCTGCGAACGGGCGTAG
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