mRNA_F-serratus_M_contig1385.2779.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1385.2779.1
Unique NamemRNA_F-serratus_M_contig1385.2779.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1385.2779.1 vs. uniprot
Match: A0A0U1WNN7_SARFS (NADH-ubiquinone oxidoreductase chain 3 n=22 Tax=Sargassaceae TaxID=3014 RepID=A0A0U1WNN7_SARFS)

HSP 1 Score: 227 bits (578), Expect = 4.510e-75
Identity = 108/120 (90.00%), Postives = 118/120 (98.33%), Query Frame = 1
Query:    1 MFFLKEYYPALIYLCFSLLLASVIFGASYTLAMSEADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPAIGYWSMIDFLFELVIGFIYAWQIGSLDWE 360
            MFFL+EY PALIYLCFSL+LASVIFGASYTLA++E+D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVF+FPWAASLSQLP +GYWS+IDFLFELV+GFIYAWQIGSLDWE
Sbjct:    1 MFFLREYSPALIYLCFSLILASVIFGASYTLALAESDNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFIFPWAASLSQLPPVGYWSVIDFLFELVVGFIYAWQIGSLDWE 120          
BLAST of mRNA_F-serratus_M_contig1385.2779.1 vs. uniprot
Match: A0A0U1XDC4_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=66 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XDC4_9PHAE)

HSP 1 Score: 221 bits (563), Expect = 8.750e-73
Identity = 106/120 (88.33%), Postives = 116/120 (96.67%), Query Frame = 1
Query:    1 MFFLKEYYPALIYLCFSLLLASVIFGASYTLAMSEADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPAIGYWSMIDFLFELVIGFIYAWQIGSLDWE 360
            MFFLKEYYPALI+L FSL LA++IFGASY LA+S++DSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPWA SLSQLP+IGYWSM+DFLFELV+GFIYAWQIGSLDWE
Sbjct:    1 MFFLKEYYPALIFLGFSLFLAALIFGASYILAISDSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAVSLSQLPSIGYWSMMDFLFELVVGFIYAWQIGSLDWE 120          
BLAST of mRNA_F-serratus_M_contig1385.2779.1 vs. uniprot
Match: Q94YZ1_PYLLI (NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Ectocarpales TaxID=2877 RepID=Q94YZ1_PYLLI)

HSP 1 Score: 219 bits (559), Expect = 3.560e-72
Identity = 105/120 (87.50%), Postives = 114/120 (95.00%), Query Frame = 1
Query:    1 MFFLKEYYPALIYLCFSLLLASVIFGASYTLAMSEADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPAIGYWSMIDFLFELVIGFIYAWQIGSLDWE 360
            MF LKEYYPALI+L FS +LA++IFGASY LA+S ADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPWA SLSQLP+IGYWSM+DFLFELV+GFIYAWQIGSLDWE
Sbjct:    1 MFLLKEYYPALIFLVFSFVLAAIIFGASYILAVSSADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAVSLSQLPSIGYWSMMDFLFELVVGFIYAWQIGSLDWE 120          
BLAST of mRNA_F-serratus_M_contig1385.2779.1 vs. uniprot
Match: E6ZET4_ECTSI (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=E6ZET4_ECTSI)

HSP 1 Score: 218 bits (554), Expect = 2.060e-71
Identity = 104/120 (86.67%), Postives = 114/120 (95.00%), Query Frame = 1
Query:    1 MFFLKEYYPALIYLCFSLLLASVIFGASYTLAMSEADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPAIGYWSMIDFLFELVIGFIYAWQIGSLDWE 360
            MFFLKEYYP LI+L FSL LA VIFGAS+ LA+S+AD+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPW+ SLSQLP+IGYWSM+DFLFELV+GFIYAWQIGSLDWE
Sbjct:    1 MFFLKEYYPVLIFLGFSLALAGVIFGASFILAVSDADTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWSVSLSQLPSIGYWSMLDFLFELVVGFIYAWQIGSLDWE 120          
BLAST of mRNA_F-serratus_M_contig1385.2779.1 vs. uniprot
Match: A0A4Y5T7V9_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T7V9_9PHAE)

HSP 1 Score: 204 bits (518), Expect = 6.370e-66
Identity = 97/120 (80.83%), Postives = 110/120 (91.67%), Query Frame = 1
Query:    1 MFFLKEYYPALIYLCFSLLLASVIFGASYTLAMSEADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPAIGYWSMIDFLFELVIGFIYAWQIGSLDWE 360
            MF+L EYY  LI+L  S+LLA +IFGASY LA+S +DSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVF+FPWA SLSQ+P+IGYWSM+DFLFELV+GFIYAW+IGSL+W 
Sbjct:    1 MFYLHEYYSILIFLVISVLLAFIIFGASYLLALSNSDSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFVFPWAISLSQMPSIGYWSMMDFLFELVVGFIYAWKIGSLEWS 120          
BLAST of mRNA_F-serratus_M_contig1385.2779.1 vs. uniprot
Match: Q2TU99_DICDH (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dictyota dichotoma TaxID=2876 RepID=Q2TU99_DICDH)

HSP 1 Score: 203 bits (517), Expect = 8.760e-66
Identity = 95/119 (79.83%), Postives = 109/119 (91.60%), Query Frame = 1
Query:    1 MFFLKEYYPALIYLCFSLLLASVIFGASYTLAMSEADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPAIGYWSMIDFLFELVIGFIYAWQIGSLDW 357
            MF+L EYYP L++   S+LLA +IFG SY LA S+ADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVF+FPWA SLSQLP++GYWSM+DFLFEL++GFIYAW+IGSL+W
Sbjct:    1 MFYLHEYYPVLLFFLISILLAFLIFGLSYILAFSKADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFVFPWAVSLSQLPSVGYWSMMDFLFELIVGFIYAWKIGSLEW 119          
BLAST of mRNA_F-serratus_M_contig1385.2779.1 vs. uniprot
Match: A0A8E8U4L6_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Phaeophyceae sp. TaxID=2249243 RepID=A0A8E8U4L6_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 1.500e-64
Identity = 92/117 (78.63%), Postives = 107/117 (91.45%), Query Frame = 1
Query:   10 LKEYYPALIYLCFSLLLASVIFGASYTLAMSEADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPAIGYWSMIDFLFELVIGFIYAWQIGSLDWE 360
            L EYYP L+++ FSL L+ +IFGASYT +++E D+EK+SSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPW  +LS+LPA+GYWSM+DF+ ELVIGFIYAWQIGSLDWE
Sbjct:    4 LPEYYPILLFITFSLFLSLLIFGASYTFSIAEPDNEKVSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWVVTLSELPAVGYWSMVDFIIELVIGFIYAWQIGSLDWE 120          
BLAST of mRNA_F-serratus_M_contig1385.2779.1 vs. uniprot
Match: A0A8F0K0X7_9PHAE (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0K0X7_9PHAE)

HSP 1 Score: 196 bits (498), Expect = 6.910e-63
Identity = 92/119 (77.31%), Postives = 105/119 (88.24%), Query Frame = 1
Query:    1 MFFLKEYYPALIYLCFSLLLASVIFGASYTLAMSEADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPAIGYWSMIDFLFELVIGFIYAWQIGSLDW 357
            MF   EYYP L++L    +LA +IFGASY L  S+AD+EKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIET+FLFPWA +LSQLP++GYWSM+DFL ELV+GFIYAWQIGSL+W
Sbjct:    1 MFCFHEYYPVLLFLVVGFILAVIIFGASYFLVFSKADNEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETIFLFPWAITLSQLPSLGYWSMMDFLLELVVGFIYAWQIGSLEW 119          
BLAST of mRNA_F-serratus_M_contig1385.2779.1 vs. uniprot
Match: A0A7S6UA31_9STRA (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6UA31_9STRA)

HSP 1 Score: 181 bits (459), Expect = 6.920e-57
Identity = 85/117 (72.65%), Postives = 101/117 (86.32%), Query Frame = 1
Query:   13 KEYYPALIYLCFSLLLASVIFGASYTLAMSEADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLP-AIGYWSMIDFLFELVIGFIYAWQIGSLDWE 360
            +EYYP L++   S+ LA +IFGASY LA+++ D+EKLSSYECGFDPYEDARNAFDVRFYLVAILFL+FD+E VFLFPWA  L Q   ++G WSMIDFLFEL++GF+YAWQIGSLDWE
Sbjct:    7 QEYYPILVFTFLSIGLAGLIFGASYALALAKPDTEKLSSYECGFDPYEDARNAFDVRFYLVAILFLIFDLEAVFLFPWAVGLGQQSTSLGLWSMIDFLFELLVGFVYAWQIGSLDWE 123          
BLAST of mRNA_F-serratus_M_contig1385.2779.1 vs. uniprot
Match: A0A0K2RWM0_9STRA (NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Triparma laevis TaxID=1534972 RepID=A0A0K2RWM0_9STRA)

HSP 1 Score: 175 bits (444), Expect = 1.330e-54
Identity = 77/118 (65.25%), Postives = 102/118 (86.44%), Query Frame = 1
Query:    7 FLKEYYPALIYLCFSLLLASVIFGASYTLAMSEADSEKLSSYECGFDPYEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPAIGYWSMIDFLFELVIGFIYAWQIGSLDWE 360
            F +EYYP L++L  +++L++VI GASY LA+   D+EKLS+YECGFDPYEDAR+ FDVRFYLVAILF++FDIE +FLFPWA SL Q+ ++G+WSM+DF+ EL +GFIYAW+IG+L+WE
Sbjct:    6 FRQEYYPILLFLSVAIILSAVILGASYLLAVQNPDTEKLSAYECGFDPYEDARHTFDVRFYLVAILFIIFDIEAMFLFPWAVSLDQIGSLGFWSMVDFILELGVGFIYAWKIGALEWE 123          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1385.2779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0U1WNN7_SARFS4.510e-7590.00NADH-ubiquinone oxidoreductase chain 3 n=22 Tax=Sa... [more]
A0A0U1XDC4_9PHAE8.750e-7388.33NADH-ubiquinone oxidoreductase chain 3 n=66 Tax=Ph... [more]
Q94YZ1_PYLLI3.560e-7287.50NADH-ubiquinone oxidoreductase chain 3 n=3 Tax=Ect... [more]
E6ZET4_ECTSI2.060e-7186.67NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Ect... [more]
A0A4Y5T7V9_9PHAE6.370e-6680.83NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dic... [more]
Q2TU99_DICDH8.760e-6679.83NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Dic... [more]
A0A8E8U4L6_9PHAE1.500e-6478.63NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pha... [more]
A0A8F0K0X7_9PHAE6.910e-6377.31NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Pro... [more]
A0A7S6UA31_9STRA6.920e-5772.65NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Sch... [more]
A0A0K2RWM0_9STRA1.330e-5465.25NADH-ubiquinone oxidoreductase chain 3 n=1 Tax=Tri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1385contigF-serratus_M_contig1385:10439..10801 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score147.1
Seed ortholog evalue5.2e-33
Seed eggNOG ortholog70448.Q0P3H5
KEGG rclassRC00061
KEGG koko:K03880
KEGG TC3.D.1.6
KEGG ReactionR11945
KEGG Pathwayko00190,ko01100,ko04714,ko04723,ko05012,map00190,map01100,map04714,map04723,map05012
KEGG ModuleM00142
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone
EggNOG OGs34IGZ@3041,37UUF@33090,COG0838@1,KOG4662@2759
EC1.6.5.3
COG Functional cat.C
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size363
Cds size363
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929362.353701-CDS-F-serratus_M_contig1385:10438..108011622929362.353701-CDS-F-serratus_M_contig1385:10438..10801Fucus serratus maleCDSF-serratus_M_contig1385 10439..10801 +
1690962816.5916352-CDS-F-serratus_M_contig1385:10438..108011690962816.5916352-CDS-F-serratus_M_contig1385:10438..10801Fucus serratus maleCDSF-serratus_M_contig1385 10439..10801 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1385.2779.1prot_F-serratus_M_contig1385.2779.1Fucus serratus malepolypeptideF-serratus_M_contig1385 10439..10801 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1385.2779.1

>prot_F-serratus_M_contig1385.2779.1 ID=prot_F-serratus_M_contig1385.2779.1|Name=mRNA_F-serratus_M_contig1385.2779.1|organism=Fucus serratus male|type=polypeptide|length=121bp
MFFLKEYYPALIYLCFSLLLASVIFGASYTLAMSEADSEKLSSYECGFDP
YEDARNAFDVRFYLVAILFLLFDIETVFLFPWAASLSQLPAIGYWSMIDF
LFELVIGFIYAWQIGSLDWE*
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mRNA from alignment at F-serratus_M_contig1385:10439..10801+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1385.2779.1 ID=mRNA_F-serratus_M_contig1385.2779.1|Name=mRNA_F-serratus_M_contig1385.2779.1|organism=Fucus serratus male|type=mRNA|length=363bp|location=Sequence derived from alignment at F-serratus_M_contig1385:10439..10801+ (Fucus serratus male)
ATGTTTTTCTTAAAAGAATATTATCCAGCGTTAATTTATTTATGTTTTAG TCTTTTGTTAGCATCTGTTATTTTTGGAGCGTCTTATACGTTAGCTATGT CTGAGGCAGATAGCGAAAAGTTATCTTCTTATGAGTGTGGGTTTGATCCC TACGAAGATGCTCGTAACGCCTTTGATGTACGTTTTTATCTTGTAGCTAT TCTTTTTCTTCTTTTTGATATCGAAACTGTTTTCCTTTTTCCATGGGCCG CATCTTTGAGTCAACTTCCGGCGATTGGTTATTGGTCAATGATAGATTTT CTTTTTGAACTTGTTATTGGGTTTATATACGCATGGCAAATAGGTAGTTT AGATTGGGAATGA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1385:10439..10801+

>mRNA_F-serratus_M_contig1385.2779.1 ID=mRNA_F-serratus_M_contig1385.2779.1|Name=mRNA_F-serratus_M_contig1385.2779.1|organism=Fucus serratus male|type=CDS|length=726bp|location=Sequence derived from alignment at F-serratus_M_contig1385:10439..10801+ (Fucus serratus male)
ATGTTTTTCTTAAAAGAATATTATCCAGCGTTAATTTATTTATGTTTTAG
TCTTTTGTTAGCATCTGTTATTTTTGGAGCGTCTTATACGTTAGCTATGT
CTGAGGCAGATAGCGAAAAGTTATCTTCTTATGAGTGTGGGTTTGATCCC
TACGAAGATGCTCGTAACGCCTTTGATGTACGTTTTTATCTTGTAGCTAT
TCTTTTTCTTCTTTTTGATATCGAAACTGTTTTCCTTTTTCCATGGGCCG
CATCTTTGAGTCAACTTCCGGCGATTGGTTATTGGTCAATGATAGATTTT
CTTTTTGAACTTGTTATTGGGTTTATATACGCATGGCAAATAGGTAGTTT
AGATTGGGAATGAATGTTTTTCTTAAAAGAATATTATCCAGCGTTAATTT
ATTTATGTTTTAGTCTTTTGTTAGCATCTGTTATTTTTGGAGCGTCTTAT
ACGTTAGCTATGTCTGAGGCAGATAGCGAAAAGTTATCTTCTTATGAGTG
TGGGTTTGATCCCTACGAAGATGCTCGTAACGCCTTTGATGTACGTTTTT
ATCTTGTAGCTATTCTTTTTCTTCTTTTTGATATCGAAACTGTTTTCCTT
TTTCCATGGGCCGCATCTTTGAGTCAACTTCCGGCGATTGGTTATTGGTC
AATGATAGATTTTCTTTTTGAACTTGTTATTGGGTTTATATACGCATGGC
AAATAGGTAGTTTAGATTGGGAATGA
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