mRNA_F-serratus_M_contig1385.2778.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1385.2778.1
Unique NamemRNA_F-serratus_M_contig1385.2778.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1385.2778.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 406 bits (1043), Expect = 7.820e-125
Identity = 202/455 (44.40%), Postives = 287/455 (63.08%), Query Frame = 1
Query:    1 EDGFYRVSYQGRMVLWVPEEERELQARLMVCAHMQDAGHRGVRATTHRLGAYCAWDNMEKDITKFIRQCLHCTDSKAGNAMPRPLGDLVHGTEVGDVLHFDYLSLGESNAIDTGGLVDG-GYKYELVLMDGVSRFVWLEEAVSCSLKVAARSVLKWCASFGVHKAFTSDSGAHFTEQVMQMVSSRLGVVHRFGVANVSWSHGTVERMNREVVKTFRAVLSERCRPPSEWSLELGAVQWALKSAYRECMGTTPFLIMTGRPPATAMSVLAGKYGD------------------VSREQEDLRRDVVKRVREQRERAREVSGRGYLPVFEVGAYVLVARVRKPGRVPKLVQTRTGPWRVVPGGSEHIRVVEDIVMGETKEVHVVRMRPYADSSLVVGAEVREMFEMTKHQGEFKIADVISVGENPARVEE-YRVQIAWVGLEDKEPTWESMSTVYAD 1305
            ++G +RV   GR VLW+P+  R++Q RLM+CAHM++AGHRGV AT HRL  YC W  M++D+ +F++QCLHC DSK+G  +PRP G+ VHG   G+VLHFDYL +G+S  +   GL +  GY Y LV+MD +S F W+E   +C+ ++ A+ +L WC + GV + + SD+  HF   VM  +   LGV  RF VAN  WS+GT ERM RE+V+T +AVL ER R   +W   + AVQWAL +AYRE   +TP+ +M GR P T+ S LA   G+                  V + Q  L + V ++V   R R R  + RG LP F VG YV+VARVR+ G  PKL  T TGPWRVV    +H+  V++IV G+ ++VHV R+R YADS L V ++++++F+ +  QGE ++  ++++G  PA     Y V++ W G E+ E TW+ +S +Y D
Sbjct: 1167 DEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQVQNVIQTQAVLHKQVQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQD 1619          
BLAST of mRNA_F-serratus_M_contig1385.2778.1 vs. uniprot
Match: A0A6H5JVS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVS6_9PHAE)

HSP 1 Score: 329 bits (843), Expect = 7.280e-106
Identity = 170/398 (42.71%), Postives = 245/398 (61.56%), Query Frame = 1
Query:  172 MEKDITKFIRQCLHCTDSKAGNAMPRPLGDLVHGTEVGDVLHFDYLSLGESNAIDTGGLVDG-GYKYELVLMDGVSRFVWLEEAVSCSLKVAARSVLKWCASFGVHKAFTSDSGAHFTEQVMQMVSSRLGVVHRFGVANVSWSHGTVERMNREVVKTFRAVLSERCRPPSEWSLELGAVQWALKSAYRECMGTTPFLIMTGRPPATAMSVLAGKYGD------------------VSREQEDLRRDVVKRVREQRERAREVSGRGYLPVFEVGAYVLVARVRKPGRVPKLVQTRTGPWRVVPGGSEHIRVVEDIVMGETKEVHVVRMRPYADSSLVVGAEVREMFEMTKHQGEFKIADVISVGENPARVEE-YRVQIAWVGLEDKEPTWESMSTVYAD 1305
            M++D+ +F++QCLHC DSK+G  +PRP G+ VHG   G+VLHFDYL +G+S  +   GL +  GY Y LV+MD +S F W+E   +C+ ++ A+ +L WC + GV + + SD+  HF   VM  +   LGV  RF VAN  WS+GT ERM REVV+T +AVL ER R   +W   + AVQWAL +AYRE   +TP+ +M GR P T+ S LA   G+                  V + Q  L + + ++V   R R R  + RG LP F VG YV+VARVR+ G  PKL  T TGPWRVV    +H+  V++IV G+ ++VHV R+R YADS L V ++++++F+ +  QGE ++  ++++G  PA     Y V++ W G E+ E TW+ +S +Y D
Sbjct:    1 MDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREVVRTMKAVLQERRRNLRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGEAWNIDTLDATKLKQQVQNVIQTQAVLHKQIQQKVDHNRARQRAAASRGDLPAFTVGDYVMVARVRRSGITPKLSSTWTGPWRVVSAAKKHVYGVQNIVNGQVRDVHVARLRFYADSELNVTSDLKDVFQHSFGQGEHEMESILNIG--PAHDGSGYLVRVRWAGFEEDEDTWQPLSDIYQD 396          
BLAST of mRNA_F-serratus_M_contig1385.2778.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 346 bits (888), Expect = 3.220e-103
Identity = 189/453 (41.72%), Postives = 270/453 (59.60%), Query Frame = 1
Query:    4 DGFYRVSYQGRMVLWVPEEERELQARLMVCAHMQDAGHRGVRATTHRLGAYCAWDNMEKDITKFIRQCLHCTDSKAGNAMPRPLGDLVHGTEVGDVLHFDYLSLGESNAIDTGGL-VDGGYKYELVLMDGVSRFVWLEEAVSCSLKVAARSVLKWCASFGVHKAFTSDSGAHFTEQVMQMVSSRLGVVHRFGVANVSWSHGTVERMNREVVKTFRAVLSERCRPPSEWSLELGAVQWALKSAYRECMGTTPFLIMTGRPPATAMSVLAGKYG-----DVSRE-------------QEDLRRDVVKRVREQRERAREVSGRGYLPVFEVGAYVLVARVRKPGRVPKLVQTRTGPWRVVPGGSEHIRVVEDIVMGETKEVHVVRMRPYADSSLVVGAEVREMFEMTKHQGEFKIADVI--SVGENPARVEEYRVQIAWVGLEDKEPTWESMSTVY 1299
            +G +RV   GR VLW+P++   LQ RLMVCAHM++AGHRG  AT  RL  YC W  ME+ +T F++QCLHC DSKAG  +PRPLG+ VHGT  G+V+HFDYL +G S  +   GL  + G+KY LV+MD +S +VWLE   +C+  + A+ +L WC   GV + + SD+ +HF   +M  + + LGV   F VAN  WS+GT ERM REVV+T +A++ E      +W   + AVQWAL +A+RE  G+TP+ +M GR P TA+S LA   G     DV  E             Q  L ++V+ +V+  R + R  +  G LP F VG YV+VA  R                        H+  V++IV GE ++VHV R+R YAD++L + AE++E+F+    QGEF++A ++  SV E+      + V++ WVG + +E TWE +S ++
Sbjct: 1270 EGLFRVGMNGRDVLWIPDQASALQVRLMVCAHMKEAGHRGAVATLQRLSEYCCWFRMEEHVTDFVKQCLHCMDSKAGEKVPRPLGETVHGTRPGEVVHFDYLYVGASGPLGDDGLDEEEGFKYILVMMDDMSNWVWLEPTGACTACLTAQHLLTWCKILGVPEVWVSDTASHFKNHMMAALETALGVDRNFSVANSPWSNGTCERMMREVVRTLKAMIQEERGRTRDWVDLVPAVQWALNTAFRERYGSTPYHVMFGRAPRTALSTLASSTGAEWKVDVLDEKSLRLKVQHVVEAQRHLHKEVLDKVQASRSKHRASARVGSLPDFVVGDYVIVAAERL-----------------------HVYGVQNIVSGEVRDVHVARLRFYADAALEITAELKEVFQHAFTQGEFEMAAIVDMSVAEDGPG---FDVEVEWVGFDKEENTWEELSKMW 1696          
BLAST of mRNA_F-serratus_M_contig1385.2778.1 vs. uniprot
Match: A0A6H5JCX8_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCX8_9PHAE)

HSP 1 Score: 294 bits (752), Expect = 7.450e-89
Identity = 134/274 (48.91%), Postives = 184/274 (67.15%), Query Frame = 1
Query:    1 EDGFYRVSYQGRMVLWVPEEERELQARLMVCAHMQDAGHRGVRATTHRLGAYCAWDNMEKDITKFIRQCLHCTDSKAGNAMPRPLGDLVHGTEVGDVLHFDYLSLGESNAIDTGGLVDG-GYKYELVLMDGVSRFVWLEEAVSCSLKVAARSVLKWCASFGVHKAFTSDSGAHFTEQVMQMVSSRLGVVHRFGVANVSWSHGTVERMNREVVKTFRAVLSERCRPPSEWSLELGAVQWALKSAYRECMGTTPFLIMTGRPPATAMSVLAGKYGD 819
            ++G +RV   GR VLW+P+  R++Q RLM+CAHM++AGHRGV AT HRL  YC W  M++D+ +F++QCLHC DSK+G  +PRP G+ VHG   G+VLHFDYL +G+S  +   GL +  GY Y LV+MD +S F W+E   +C+ ++ A+ +L WC + GV + + SD+  HF   VM  +   LGV  RF VAN  WS+GT ERM RE+V+T +AVL ER R   +W   + AVQWAL +AYRE   +TP+ +M GR P T+ S LA   G+
Sbjct:  391 DEGLFRVMIDGRKVLWIPDTARDMQLRLMLCAHMKEAGHRGVTATMHRLREYCCWSTMDRDVKEFVQQCLHCMDSKSGEIVPRPFGETVHGKRPGEVLHFDYLHVGKSGPLGADGLDESDGYVYLLVMMDDLSNFAWMEPTGTCTARLTAQHLLNWCKTLGVPEVWVSDTATHFKNSVMDTLEKALGVERRFTVANSPWSNGTCERMMREIVRTMKAVLQERRRNVRDWVDLVPAVQWALNTAYRERYASTPYHVMFGRAPRTSFSTLASSSGE 664          
BLAST of mRNA_F-serratus_M_contig1385.2778.1 vs. uniprot
Match: A0A2P4XSG7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XSG7_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.750e-61
Identity = 137/435 (31.49%), Postives = 212/435 (48.74%), Query Frame = 1
Query:    4 DGFYRVSYQGRMVLWVPEEERELQARLMVCAHMQDAGHRGVRATTHRLGAYCAWDNMEKDITKFIRQCLHCTDSKAGNAMPRPLGDLVHGTEVGDVLHFDYLSLGESNAIDTGGLVDGGYKYELVLMDGVSRFVWLEEAVSCSLKVAARSVLKWCASFGVHKAFTSDSGAHFTEQVMQMVSSRLGVVHRFGVANVSWSHGTVERMNREVVKTFRAVLSERCRPPSEWSLELGAVQWALKSAYRECMGTTPFLIMTGRPPATAMSVL-AGKYGDVSREQEDLRRDVVKRVREQRERAREVSGRGYLPVFEVGAYVLVARVRKPGRVPKLVQTRTGPWRVVPGGSEHIRVVEDIVMGETKEVHVVRMRPYADSSLVVGAEVREMFEMTKHQGEFKIADVISVGENPARVEEYRVQIAWVGLEDKEPTWESMSTVYAD 1305
            DG +R+       +W+P+E  ELQ R+ +  H   AGHR   AT   + A   W  ++ D+  F+  CLHC  S  G   PRPLG+ +H  +  +V+H+DYL +G+S         D   +Y LV+ D  S+FVWL    + +       ++ W ASFGV + + SD G HF  +V++ +   LG  H F  A   W++GTVE +NREV++  RA+LSE      EW   +  VQ  L  +        P   + G  P TAM+ L A    D     + ++   +  +  QR +         +  F+VG +VL A V +  R  KL     GP +V    S  I  +E+++ GE +EVH  R++ YADSSL V     ++     H  E  + D +      A+ + + +++ W GL + E +WE  + +  D
Sbjct:   38 DGIWRIDQNK---IWIPDEVSELQLRICIVGHFGAAGHRATDATFSAIAAKFHWKGLKADVDYFVGHCLHCASSTGGPPQPRPLGEAIHADKPNEVIHWDYLYMGKS---------DSDLEYVLVIKDDASKFVWLMPTDAATADNTFECLMTWFASFGVVRWWVSDQGTHFKNKVIEGLQHALGAHHHFTTARCPWANGTVEVVNREVLRCCRALLSEWRLQSGEWPRVIKIVQMVLNHS--------PCSAIDGVAPVTAMTGLKAMNPTDPLAVPDPIQVATLDEI--QRRKHHNGKKGTTMAQFDVGDFVLYADVWQHARA-KLRVKWCGPAQVTAATSNWIFEIENLITGERREVHASRLKFYADSSLEV---TEDLLRHVAHNSEGHVVDSLLAARYNAQEKRHELKVHWRGLAEAEDSWEPAAVLLQD 446          
BLAST of mRNA_F-serratus_M_contig1385.2778.1 vs. uniprot
Match: A0A6A3JAA2_9STRA (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3JAA2_9STRA)

HSP 1 Score: 202 bits (514), Expect = 3.580e-56
Identity = 145/442 (32.81%), Postives = 223/442 (50.45%), Query Frame = 1
Query:   46 WVPEEERELQARLMVCAHMQDAGHRGVRATTHRLGAYCAWDNMEKDITKFIRQCLHCTDSKAGNAMPRPLGDLVHGTEVGDVLHFDYLSLGESNAIDTGGLVDGGYKYELVLMDGVSRFVWLEEAVSCSLKVAARSVLKWCASFGVHKAFTSDSGAHFTEQVMQMVSSRLGVVHRFGVANVSWSHGTVERMNREVVKTFRAVLSERCRPPSEWSLELGAVQWALK-SAYRECMGTTPFLIMTGRPPATAMSVLAG-----------KYGDVSREQEDLRRDVVKRVRE-----QRERAREVSGRGYLPV-FEVGAYVLVARVRKPGRVP--KLVQTRTGPWRVVPGGSEHIRVVEDIVMGETKEVHVVRMRPYADSSLVVGAEVREMFEMTKHQGEFKIADVISVGENP--ARVEEYRVQIAWVGLEDKEPTWESMSTVYAD 1305
            W+P   ++L AR+ V AH     HRG  A    L A      +E  + KF+RQCL C   K    +PRP G L+  TE  +V+H+D+LSLGE           G   Y LV+ DG+S F  L    +  + VAA ++L W A +G+ K   SD G HF  ++M+ ++SRL V   F      W +GTVER+NR+V++  RA+L E      EW   L A+Q  L  +A +   G +P  +  G P ++A+ V+             + GD+  + E+LR  + +  RE     +R+R +++      PV F+VG +VL +R+ +  R+P  KL+    GP++V+     H   +E +V G   EVH  R++ YADS+L       E+ E+   QG   +  V    E+      E + + ++WVGL+  E +WE   T+  D
Sbjct:   45 WIPTGAKDLLARIFVIAHCGPQSHRGQEAMVLALKARFYITKLEDKVAKFVRQCLLCKHVKGSRLIPRPYGPLLTPTERNEVVHWDFLSLGEGY---------GDPAYLLVVKDGLSHFCELFPCATSIVYVAAEALLMWAARYGIPKTLLSDQGTHFRNEMMRHMASRLKVEQNFTPVYSPWLNGTVERLNRDVLQVLRALLLEYALDYHEWPYLLPALQANLNHTAVQSLAGHSPVEVFAGLPASSALDVIVAPASETNGERVIEIGDLGDQLENLRASLHQMHREVTDAKERKRLQDMMTHKGTPVNFDVGDFVLWSRIDQ--RLPNNKLLGQWVGPFKVIEA-LPHSFKIEHLVTGRVYEVHASRLKFYADSTLNT---TDELLELASSQG--MVVGVSGFLEHRFNEEFERWELLVSWVGLQAIENSWEPWDTLLQD 469          
BLAST of mRNA_F-serratus_M_contig1385.2778.1 vs. uniprot
Match: A0A6G0RX23_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0RX23_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.270e-53
Identity = 146/467 (31.26%), Postives = 215/467 (46.04%), Query Frame = 1
Query:    4 DGFYRVSYQGRMVLWVPEEERELQARLMVCAHMQDAGHRGVRATTHRLGAYCAWDNMEKDITKFIRQCLHCTDSKAGNAMPRPLGDLVHGTEVGDVLHFDYLSLGESNAIDTGGLVDGGYKYELVLMDGVSRFVWLEEAVSCSLKVAARSVLKWCASFGVHKAFTSDSGAHFTEQVMQMVSSRLGVVHRFGVANVSWSHGTVERMNREVVKTFRAVLSERCRPPSEWSLELGAVQWALKSAYRECMG-TTPFLIMTGRPP-----------------------------ATAMSVLAGKYGDVSREQEDLRRDVVKRVREQRERAREVSGRGY-LPVFEVGAYVLVARVR-KPGRVPKLVQTRTGPWRVVPGGSEHIRVVEDIVMGETKEV-HVVRMRPYADSSLVVGAEVREMFEMTKHQGEFKIADVISVGENPARVEEYRVQIAWVGLEDKEPTWESMSTVYAD 1305
            D   R+  +    +W+P    E+Q RL V AH   +GHRG + TT  L     W  M  D++ F+  CLHC  +  G  +PRP G+ +  T+  +VLHFD+L++ E          + G KY LVL DG+S FV L   VS +   A +S+L W   FGV   + SD GAHF  QVM+ +S  LG  H F  A   W++GTVE +NREV+K+ +A+LSER     +W   L  VQ AL +   + +G  TP    T  P                              A+  + L G + +++   E  RR           R R    RG  LP F  G +VL A    + G   KL     GP R+V   +++   V+D++     E+ H  R++ Y D++        E+ E   H    ++ + +           + VQ+ W GL+D E +WE   T+ +D
Sbjct:   86 DADRRLVVRADGQVWIPSTAVEMQQRLCVVAHAGASGHRGAQTTTTALSNLFYWRTMAADVSAFVAGCLHCMVTANGR-VPRPYGETLVATKPNEVLHFDFLTMIEG---------ERGLKYVLVLKDGMSGFVELVACVSATSDQAYQSLLDWFKRFGVVHQWISDQGAHFKNQVMEKLSVALGANHHFTTAYTPWANGTVEVVNREVLKSVKALLSERRLQVQDWPRVLPVVQAALNTMPADRLGGVTPLTAFTALPGGSQLRGILHPRDPLVSTVTWVEDETIQHLASVRAALDGMHREMTNASEKRRRAA---------RDRHAKKRGVTLPRFSEGDFVLAATATGRSGN--KLALLWRGPKRIVKAVNDYTFEVQDLMAPFDIELRHASRLQLYRDAAR---GHAEELVEQAIHGQGGQLIEGLKACRLSPETHRWEVQVKWFGLDDIEQSWEPAETIRSD 528          
BLAST of mRNA_F-serratus_M_contig1385.2778.1 vs. uniprot
Match: A0A6G0WFN0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WFN0_9STRA)

HSP 1 Score: 197 bits (500), Expect = 6.590e-53
Identity = 137/448 (30.58%), Postives = 212/448 (47.32%), Query Frame = 1
Query:   16 RVSYQGRMVLWVPEEERELQARLMVCAHMQDAGHRGVRATTHRLGAYCAWDNMEKDITKFIRQCLHCTDSKAGNAMPRPLGDLVHGTEVGDVLHFDYLSLGESNAIDTGGLVDGGYKYELVLMDGVSRFVWLEEAVSCSLKVAARSVLKWCASFGVHKAFTSDSGAHFTEQVMQMVSSRLGVVHRFGVANVSWSHGTVERMNREVVKTFRAVLSERCRPPSEWSLELGAVQWALKSAYRECMG-TTPFLIMTGRPPATA-MSVLAGKYGDVSREQEDLRRDVV-----------------------KRVREQRERAREVSGRGYLPVFEVGAYVLVARVRKPGRVPKLVQTRTGPWRVVPGGSEHIRVVEDIVMGETKEVH-VVRMRPYADSSLVVGAEVREMFEMTKHQGEFKIADVISVGENPARVEEYRVQIAWVGLEDKEPTWE 1281
            R    G+  +W+P    +L+ RL V AH   +GHRG +AT   L     W  ME D+  F R+CL C   + GN +PRPLG  +H T   ++LHFDYL+L    A +          Y LV+ D  S F  L    + + +  A ++  W + FG+ K + +D GAHF  +V+  +S  L   H F  A   WS+GT+E +NR++++    ++ ER   P++WS  + AVQ AL     + +G   P    TG P  +  M+ +AG +  ++   +D+  D+                        +R++ Q  R+R    R   P F +G +VLV  V +   +PKL     GP  +V   SE I VVEDI   +T+  H   R+  +A+S  +   ++      T   G   +  +  +  N      Y + + W+GLED E TWE
Sbjct:  219 RCFCDGKGRIWIPPNATDLKTRLCVVAHAGLSGHRGTQATFQPLKELYVWQGMESDVIAFCRRCLQCLTVR-GNIIPRPLGTQLHATRPNELLHFDYLTLPLDRATNDN--------YILVIKDDASGFCLLHPCQAATAENCASALCHWFSLFGIVKTWVTDRGAHFKNEVISALSQALSTQHHFSTAYSPWSNGTIEVLNRQLLRCVITMMIERQLQPNQWSCLVPAVQTALIHMPSDRIGGRAPVTAFTGLPAMSPIMATIAGTFEVLAMSTDDMSEDLTNHLNATALALTNMHREMAKSSDSRRMQAQSRRSR----RSTPPCFSIGDFVLVGVVCQ--HLPKLALQWRGPKLIVEALSEWIYVVEDIAEPKTRSTHHASRLCLFAESKFMATEDIVNYARYT--DGGHCVRSITQMRTNDTA---YDLLVNWIGLEDIESTWE 646          
BLAST of mRNA_F-serratus_M_contig1385.2778.1 vs. uniprot
Match: A0A6A4CIS0_9STRA (Integrase catalytic domain-containing protein n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4CIS0_9STRA)

HSP 1 Score: 200 bits (508), Expect = 9.240e-53
Identity = 143/427 (33.49%), Postives = 209/427 (48.95%), Query Frame = 1
Query:   43 LWVPEEERELQARLMVCAHMQDAGHRGVRATTHRLGAYCAWDNMEKDITKFIRQCLHCTDSKAGNAMPRPLGDLVHGTEVGDVLHFDYLSLGESNAIDTGGLVDGGYKYELVLMDGVSRFVWLEEAVSCSLKVAARSVLKWCASFGVHKAFTSDSGAHFTEQVMQMVSSRLGVVHRFGVANVSWSHGTVERMNREVVKTFRAVLSERCRPPSEWSLELGAVQWALKSAYRECMG-TTPFLIMTGRPPATAMSVLAGKYGDVSREQEDLRRDVVKRVREQRERA----REVSG---------------RGYLPVFEVGAYVLVARVRKPGRVPKLVQTRTGPWRVVPGGSEHIRVVEDIVMGETK-EVHVVRMRPYADSSLVVGAEVREMFEMTKH-QGEFKIADVISVGENPARVEEYRVQIAWVGL 1257
            +W+PE   ++  R+ V AH   +GHRG R TT  + A+C W ++  D+ +F+R C+HC  ++ G   PRP G  +H T+  +VLHFDYL+L E          +   KY LV+ D  S FV L        +  A S+L W   +GV   + SD G HF  QV+  ++ +LG  H F  A   W++GTVE +NR ++K  RAVLSER   PS+W   LG VQ AL     + +G   P     G P  T +S +    G V  ++E LR  V + + E  +      REVS                +   P F VG +VL A V       KL     GP RVV   ++ +  VED+    TK + HV R+R YA+SS  V     ++ +   H QG   +     +  N    +++ +++ W+GL
Sbjct:  490 VWIPEN-CDISQRICVVAHAGRSGHRGERTTTASVAAWCWWPSLVDDVVQFVRSCIHCVATRDGRE-PRPYGAAIHATKPNEVLHFDYLTLPEDE--------NSHNKYVLVVKDDFSGFVELYPTAEPDARTCATSLLAWFHRYGVVWQWVSDQGTHFKNQVVHELAMKLGANHHFTTAYCPWANGTVEVVNRLLLKCIRAVLSERRLSPSKWETVLGMVQAALNQQPSDKLGGRAPVTAFMGLPATTPLSAIFTTDGVVEMDEEMLRTKVQQHLTETAQALEMMHREVSAISDRRRLQARARRAAKAKPPNFSVGDFVLAASVISMPN--KLAIKWQGPKRVVQALTDWVFEVEDLNAPHTKTKHHVSRLRFYAESSREV---TEDLLQYALHSQGGHCVEAFCGIRCNEV-TKQWEIEVKWLGL 900          
BLAST of mRNA_F-serratus_M_contig1385.2778.1 vs. uniprot
Match: A0A6A3HT83_9STRA (RNA-directed DNA polymerase n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3HT83_9STRA)

HSP 1 Score: 196 bits (499), Expect = 2.620e-51
Identity = 142/442 (32.13%), Postives = 221/442 (50.00%), Query Frame = 1
Query:   46 WVPEEERELQARLMVCAHMQDAGHRGVRATTHRLGAYCAWDNMEKDITKFIRQCLHCTDSKAGNAMPRPLGDLVHGTEVGDVLHFDYLSLGESNAIDTGGLVDGGYKYELVLMDGVSRFVWLEEAVSCSLKVAARSVLKWCASFGVHKAFTSDSGAHFTEQVMQMVSSRLGVVHRFGVANVSWSHGTVERMNREVVKTFRAVLSERCRPPSEWSLELGAVQWALK-SAYRECMGTTPFLIMTGRPPATAMSVLAG-----------KYGDVSREQEDLRRDVVKRVRE-----QRERAREVSGRGYLPV-FEVGAYVLVARVRKPGRVP--KLVQTRTGPWRVVPGGSEHIRVVEDIVMGETKEVHVVRMRPYADSSLVVGAEVREMFEMTKHQGEFKIADVISVGENP--ARVEEYRVQIAWVGLEDKEPTWESMSTVYAD 1305
            W+P   ++L AR  V AH    GHRG  A    L A      +E  + KF+RQCL C   K    +PRP G L+  TE  +V+H+D+LSLGE           G   Y L + DG+S F  L    + +  VAA + L W A +G+ K   SD G HF  ++++ +++RL V   F      W +GTVER+N +V++  RA+L E      EW   L A+Q  L  +A +   G +P  + TG P ++A+ V+             + GD+  + E+LR    +  RE     +R+R +++      P+ F+VG +VL +R+ +  R+P  KL+    GP++V+     H   +E +V G   EVH  R++ YADS+L       E+ E+   QG   +  V    E+      E + + ++WVGL+  E +WE + T+  D
Sbjct: 1037 WIPTGAKDLLARSFVIAHCGPQGHRGQEAMVLALKARFYITKLEDKVAKFVRQCLLCKHVKGSRLIPRPYGPLLTPTERNEVVHWDFLSLGEGY---------GDSAYHLEVKDGLSHFCELFACATPTAYVAAEAPLMWAARYGIPKTLLSDQGTHFRNEMIRHMAARLKVEQNFTPVYSPWLNGTVERLNMDVLQVLRALLLEYALDYHEWPYLLPALQANLNHTAVQSLAGHSPVEVFTGLPASSALDVIVAPASETNGERVIEIGDLGDQLENLRTSPHQMHREVTDAKERKRLQDMMTHKGTPMNFDVGDFVLWSRIDQ--RLPNNKLLGQWVGPFKVIEA-LPHSFKIEHLVTGRVYEVHASRLKFYADSTLNT---TDELLELASSQG--MVVGVSGFLEHRFNEEFERWELLVSWVGLQAIENSWEPLDTLLQD 1461          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1385.2778.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE7.820e-12544.40Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JVS6_9PHAE7.280e-10642.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE3.220e-10341.72Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCX8_9PHAE7.450e-8948.91Integrase catalytic domain-containing protein n=1 ... [more]
A0A2P4XSG7_9STRA1.750e-6131.49Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6A3JAA2_9STRA3.580e-5632.81Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]
A0A6G0RX23_9STRA2.270e-5331.26Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6G0WFN0_9STRA6.590e-5330.58Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6A4CIS0_9STRA9.240e-5333.49Integrase catalytic domain-containing protein n=2 ... [more]
A0A6A3HT83_9STRA2.620e-5132.13RNA-directed DNA polymerase n=4 Tax=Phytophthora f... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1385contigF-serratus_M_contig1385:889..2253 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score200.3
Seed ortholog evalue1.9e-48
Seed eggNOG ortholog4792.ETI57041
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons2
Model size1305
Cds size1305
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929362.2895112-CDS-F-serratus_M_contig1385:888..13701622929362.2895112-CDS-F-serratus_M_contig1385:888..1370Fucus serratus maleCDSF-serratus_M_contig1385 889..1370 -
1690962816.5700874-CDS-F-serratus_M_contig1385:888..13701690962816.5700874-CDS-F-serratus_M_contig1385:888..1370Fucus serratus maleCDSF-serratus_M_contig1385 889..1370 -
1622929362.3058286-CDS-F-serratus_M_contig1385:1430..22531622929362.3058286-CDS-F-serratus_M_contig1385:1430..2253Fucus serratus maleCDSF-serratus_M_contig1385 1431..2253 -
1690962816.5815084-CDS-F-serratus_M_contig1385:1430..22531690962816.5815084-CDS-F-serratus_M_contig1385:1430..2253Fucus serratus maleCDSF-serratus_M_contig1385 1431..2253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1385.2778.1prot_F-serratus_M_contig1385.2778.1Fucus serratus malepolypeptideF-serratus_M_contig1385 889..2253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1385.2778.1

>prot_F-serratus_M_contig1385.2778.1 ID=prot_F-serratus_M_contig1385.2778.1|Name=mRNA_F-serratus_M_contig1385.2778.1|organism=Fucus serratus male|type=polypeptide|length=435bp
EDGFYRVSYQGRMVLWVPEEERELQARLMVCAHMQDAGHRGVRATTHRLG
AYCAWDNMEKDITKFIRQCLHCTDSKAGNAMPRPLGDLVHGTEVGDVLHF
DYLSLGESNAIDTGGLVDGGYKYELVLMDGVSRFVWLEEAVSCSLKVAAR
SVLKWCASFGVHKAFTSDSGAHFTEQVMQMVSSRLGVVHRFGVANVSWSH
GTVERMNREVVKTFRAVLSERCRPPSEWSLELGAVQWALKSAYRECMGTT
PFLIMTGRPPATAMSVLAGKYGDVSREQEDLRRDVVKRVREQRERAREVS
GRGYLPVFEVGAYVLVARVRKPGRVPKLVQTRTGPWRVVPGGSEHIRVVE
DIVMGETKEVHVVRMRPYADSSLVVGAEVREMFEMTKHQGEFKIADVISV
GENPARVEEYRVQIAWVGLEDKEPTWESMSTVYAD
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mRNA from alignment at F-serratus_M_contig1385:889..2253-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1385.2778.1 ID=mRNA_F-serratus_M_contig1385.2778.1|Name=mRNA_F-serratus_M_contig1385.2778.1|organism=Fucus serratus male|type=mRNA|length=1365bp|location=Sequence derived from alignment at F-serratus_M_contig1385:889..2253- (Fucus serratus male)
GAGGATGGGTTCTATCGCGTGTCATACCAAGGGAGAATGGTGTTGTGGGT TCCTGAGGAAGAACGCGAGCTGCAAGCGCGATTAATGGTGTGTGCGCATA TGCAGGATGCGGGGCACCGTGGCGTAAGGGCAACGACCCACCGCCTCGGG GCATATTGTGCGTGGGACAACATGGAGAAGGATATAACGAAATTCATTCG CCAATGTCTACACTGCACCGATTCGAAAGCGGGCAATGCTATGCCACGTC CGCTGGGCGATCTAGTGCATGGTACGGAAGTGGGCGACGTGCTCCACTTC GACTACCTCAGTTTGGGGGAAAGCAATGCCATCGATACGGGTGGTTTGGT CGACGGGGGCTATAAGTATGAGTTAGTATTGATGGATGGCGTGAGCCGGT TCGTCTGGCTGGAAGAAGCGGTGTCATGTTCGTTGAAGGTGGCGGCGCGT TCCGTGTTGAAGTGGTGTGCCTCGTTTGGGGTGCACAAGGCGTTCACCAG TGATAGTGGGGCGCATTTTACTGAGCAAGTGATGCAGATGGTGTCCTCCC GATTGGGCGTGGTTCACCGTTTTGGCGTGGCGAATGTTTCGTGGTCGCAT GGGACAGTAGAACGGATGAACCGTGAAGTCGTGAAGACGTTTCGTGCGGT TCTCAGCGAAAGATGTCGGCCTCCGAGCGAGTGGTCGTTGGAGTTGGGGG CTGTGCAGTGGGCTCTCAAGTCGGCGTACCGGGAGTGCATGGGGACGACG CCGTTCCTGATAATGACGGGACGACCTCCTGCGACGGCAATGTCGGTGCT TGCAGGGAAATACGGTGACGTGTGTACTGTGAAGGAGCTAGACGTGCCGT GCGGGCAAATGCAGTCCTGGGTTGCTGGTTGAGCTCGAGAGCAGGAAGAC TTACGGCGCGACGTGGTGAAGCGCGTTCGTGAGCAGCGTGAGCGTGCGCG AGAGGTGAGTGGTCGTGGATACTTGCCGGTGTTTGAAGTTGGTGCCTATG TCTTGGTGGCGCGGGTGAGGAAACCGGGTCGTGTGCCTAAACTCGTACAG ACCCGGACTGGGCCGTGGCGTGTTGTACCTGGAGGATCAGAGCATATTCG TGTAGTGGAGGATATTGTCATGGGGGAAACGAAAGAAGTGCACGTGGTGC GAATGCGCCCGTATGCTGATTCGTCTCTGGTCGTAGGGGCAGAGGTGCGC GAAATGTTTGAAATGACTAAGCACCAAGGCGAGTTTAAGATCGCTGACGT GATTAGTGTTGGTGAGAATCCGGCGCGAGTGGAAGAATACCGGGTGCAGA TCGCTTGGGTTGGTCTCGAGGATAAGGAACCTACGTGGGAATCGATGTCA ACTGTCTACGCCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1385:889..2253-

>mRNA_F-serratus_M_contig1385.2778.1 ID=mRNA_F-serratus_M_contig1385.2778.1|Name=mRNA_F-serratus_M_contig1385.2778.1|organism=Fucus serratus male|type=CDS|length=2610bp|location=Sequence derived from alignment at F-serratus_M_contig1385:889..2253- (Fucus serratus male)
GAGGATGGGTTCTATCGCGTGTCATACCAAGGGAGAATGGTGTTGTGGGT
TCCTGAGGAAGAACGCGAGCTGCAAGCGCGATTAATGGTGTGTGCGCATA
TGCAGGATGCGGGGCACCGTGGCGTAAGGGCAACGACCCACCGCCTCGGG
GCATATTGTGCGTGGGACAACATGGAGAAGGATATAACGAAATTCATTCG
CCAATGTCTACACTGCACCGATTCGAAAGCGGGCAATGCTATGCCACGTC
CGCTGGGCGATCTAGTGCATGGTACGGAAGTGGGCGACGTGCTCCACTTC
GACTACCTCAGTTTGGGGGAAAGCAATGCCATCGATACGGGTGGTTTGGT
CGACGGGGGCTATAAGTATGAGTTAGTATTGATGGATGGCGTGAGCCGGT
TCGTCTGGCTGGAAGAAGCGGTGTCATGTTCGTTGAAGGTGGCGGCGCGT
TCCGTGTTGAAGTGGTGTGCCTCGTTTGGGGTGCACAAGGCGTTCACCAG
TGATAGTGGGGCGCATTTTACTGAGCAAGTGATGCAGATGGTGTCCTCCC
GATTGGGCGTGGTTCACCGTTTTGGCGTGGCGAATGTTTCGTGGTCGCAT
GGGACAGTAGAACGGATGAACCGTGAAGTCGTGAAGACGTTTCGTGCGGT
TCTCAGCGAAAGATGTCGGCCTCCGAGCGAGTGGTCGTTGGAGTTGGGGG
CTGTGCAGTGGGCTCTCAAGTCGGCGTACCGGGAGTGCATGGGGACGACG
CCGTTCCTGATAATGACGGGACGACCTCCTGCGACGGCAATGTCGGTGCT
TGCAGGGAAATACGGTGACGTGTGAGGATGGGTTCTATCGCGTGTCATAC
CAAGGGAGAATGGTGTTGTGGGTTCCTGAGGAAGAACGCGAGCTGCAAGC
GCGATTAATGGTGTGTGCGCATATGCAGGATGCGGGGCACCGTGGCGTAA
GGGCAACGACCCACCGCCTCGGGGCATATTGTGCGTGGGACAACATGGAG
AAGGATATAACGAAATTCATTCGCCAATGTCTACACTGCACCGATTCGAA
AGCGGGCAATGCTATGCCACGTCCGCTGGGCGATCTAGTGCATGGTACGG
AAGTGGGCGACGTGCTCCACTTCGACTACCTCAGTTTGGGGGAAAGCAAT
GCCATCGATACGGGTGGTTTGGTCGACGGGGGCTATAAGTATGAGTTAGT
ATTGATGGATGGCGTGAGCCGGTTCGTCTGGCTGGAAGAAGCGGTGTCAT
GTTCGTTGAAGGTGGCGGCGCGTTCCGTGTTGAAGTGGTGTGCCTCGTTT
GGGGTGCACAAGGCGTTCACCAGTGATAGTGGGGCGCATTTTACTGAGCA
AGTGATGCAGATGGTGTCCTCCCGATTGGGCGTGGTTCACCGTTTTGGCG
TGGCGAATGTTTCGTGGTCGCATGGGACAGTAGAACGGATGAACCGTGAA
GTCGTGAAGACGTTTCGTGCGGTTCTCAGCGAAAGATGTCGGCCTCCGAG
CGAGTGGTCGTTGGAGTTGGGGGCTGTGCAGTGGGCTCTCAAGTCGGCGT
ACCGGGAGTGCATGGGGACGACGCCGTTCCTGATAATGACGGGACGACCT
CCTGCGACGGCAATGTCGGTGCTTGCAGGGAAATACGGTGACGTGTCTCG
AGAGCAGGAAGACTTACGGCGCGACGTGGTGAAGCGCGTTCGTGAGCAGC
GTGAGCGTGCGCGAGAGGTGAGTGGTCGTGGATACTTGCCGGTGTTTGAA
GTTGGTGCCTATGTCTTGGTGGCGCGGGTGAGGAAACCGGGTCGTGTGCC
TAAACTCGTACAGACCCGGACTGGGCCGTGGCGTGTTGTACCTGGAGGAT
CAGAGCATATTCGTGTAGTGGAGGATATTGTCATGGGGGAAACGAAAGAA
GTGCACGTGGTGCGAATGCGCCCGTATGCTGATTCGTCTCTGGTCGTAGG
GGCAGAGGTGCGCGAAATGTTTGAAATGACTAAGCACCAAGGCGAGTTTA
AGATCGCTGACGTGATTAGTGTTGGTGAGAATCCGGCGCGAGTGGAAGAA
TACCGGGTGCAGATCGCTTGGGTTGGTCTCGAGGATAAGGAACCTACGTG
GGAATCGATGTCAACTGTCTACGCCGACCTCGAGAGCAGGAAGACTTACG
GCGCGACGTGGTGAAGCGCGTTCGTGAGCAGCGTGAGCGTGCGCGAGAGG
TGAGTGGTCGTGGATACTTGCCGGTGTTTGAAGTTGGTGCCTATGTCTTG
GTGGCGCGGGTGAGGAAACCGGGTCGTGTGCCTAAACTCGTACAGACCCG
GACTGGGCCGTGGCGTGTTGTACCTGGAGGATCAGAGCATATTCGTGTAG
TGGAGGATATTGTCATGGGGGAAACGAAAGAAGTGCACGTGGTGCGAATG
CGCCCGTATGCTGATTCGTCTCTGGTCGTAGGGGCAGAGGTGCGCGAAAT
GTTTGAAATGACTAAGCACCAAGGCGAGTTTAAGATCGCTGACGTGATTA
GTGTTGGTGAGAATCCGGCGCGAGTGGAAGAATACCGGGTGCAGATCGCT
TGGGTTGGTCTCGAGGATAAGGAACCTACGTGGGAATCGATGTCAACTGT
CTACGCCGAC
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