mRNA_F-serratus_M_contig1384.2775.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1384.2775.1
Unique NamemRNA_F-serratus_M_contig1384.2775.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1384.2775.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1384contigF-serratus_M_contig1384:121905..123388 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size162
Cds size129
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1384.2775.1prot_F-serratus_M_contig1384.2775.1Fucus serratus malepolypeptideF-serratus_M_contig1384 121905..123357 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929362.019134-CDS-F-serratus_M_contig1384:121904..1219801622929362.019134-CDS-F-serratus_M_contig1384:121904..121980Fucus serratus maleCDSF-serratus_M_contig1384 121905..121980 +
1690962816.4825978-CDS-F-serratus_M_contig1384:121904..1219801690962816.4825978-CDS-F-serratus_M_contig1384:121904..121980Fucus serratus maleCDSF-serratus_M_contig1384 121905..121980 +
1622929362.0371957-CDS-F-serratus_M_contig1384:123304..1233571622929362.0371957-CDS-F-serratus_M_contig1384:123304..123357Fucus serratus maleCDSF-serratus_M_contig1384 123305..123357 +
1690962816.4952464-CDS-F-serratus_M_contig1384:123304..1233571690962816.4952464-CDS-F-serratus_M_contig1384:123304..123357Fucus serratus maleCDSF-serratus_M_contig1384 123305..123357 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929362.0478168-UTR-F-serratus_M_contig1384:123357..1233881622929362.0478168-UTR-F-serratus_M_contig1384:123357..123388Fucus serratus maleUTRF-serratus_M_contig1384 123358..123388 +
1690962816.5029647-UTR-F-serratus_M_contig1384:123357..1233881690962816.5029647-UTR-F-serratus_M_contig1384:123357..123388Fucus serratus maleUTRF-serratus_M_contig1384 123358..123388 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1384.2775.1

>prot_F-serratus_M_contig1384.2775.1 ID=prot_F-serratus_M_contig1384.2775.1|Name=mRNA_F-serratus_M_contig1384.2775.1|organism=Fucus serratus male|type=polypeptide|length=43bp
SAGVRRYIFIAGNRALELEQTPKIHCDQSNFLTSWCERRSEP*
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mRNA from alignment at F-serratus_M_contig1384:121905..123388+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1384.2775.1 ID=mRNA_F-serratus_M_contig1384.2775.1|Name=mRNA_F-serratus_M_contig1384.2775.1|organism=Fucus serratus male|type=mRNA|length=1484bp|location=Sequence derived from alignment at F-serratus_M_contig1384:121905..123388+ (Fucus serratus male)
TCCGCTGGAGTAAGGAGATACATTTTTATAGCTGGGAACCGGGCGCTGGA
ACTGGAGCAGACGCCAAAAATACACTGTGAGTCATGGAGAACTTATCACT
CTTTGAATATATGATGAAGATGGGGTGCACTCAATCGGAAATAAGTTACG
CACTCCGTCACGCATTGATGATGAAAGACTACTCCAAAGATGCAGTGGAT
GACGTCCTTTATGAGTCATCGGATGAGGGCAGAAAGCGTAGGGAGACGCA
GATGGACGCCATTGAGGCCGCTAACGCACATCGCTTGAGGGAGATGGTAT
TTGTTTTGACGAAAGTGGAGGTGGATGCTTGGCGAAGGATGACTGGTTCC
GATCGCGCCGAAGTGTTGGGACGGGACGGCCGACCCTTGACGCCTGAGGA
ATACACTACTTTTTTGAAGGATGAGGTGGACGAGTTGAGAGATGCTATCT
TTCTATCTGAACGAGAACGGGGCCTCAAGAGGATAGACAGATTTATGCGA
GAGTTCATACGGGGTCGAGTAATAATGCAGCTCACCGACGACGAACACGA
CGCGATCCAACTGCTCAGGCGACAACTGCTCAGGCGAGCCCACAGAACGC
CACAGACTAATACGCCGTCAGATTCGCATGCTACCGTTTCACCAGCGAGC
ACCGTACAGCAATGTCTCGATTCGCCGTCAGACTCGTCCACTGTCTTGAA
AGAACGAGTCGAGCCAAATCTCGTCGCGACCGAACAGCAGTGTCTCGATT
TACCGCCAGAACCGCATGCTGCCTTGGAACGAATCGAGCCAGCTCCCGTC
GCGACCGAACAGCAGTGTCTCGATGCACCGTCAGACCAATGTATTACTTT
GGAGGAAGAAGAAACATGCACGAATCAGGGGGAAGATTTTATTTCACCAG
CGAGCACCGTACAGCAATGTCTCGATTTACCGCCAGAATCGCACGCTGCC
TTGGAGGAATGCCAGCTCCCGTCGCGACCGAACAGCAGTGTCTCGACCCG
CCGTCGGACCCATGTGTTATTTTGGGGGGACTGGCAAATGTAAGTGGGAG
CCCATGCTTGGATGAGGGGGAAAATTTTATTTTACAAAACGAGGACACAA
CGTTGGAGAGCGAGAATTCGGGGGAAAACTGGGTTCTAGCGAGCATCACG
CAAGACGCAACTACAGCAGTACGCGTCGCCACTCGCGTGGCGGTTGCGAC
TGACCAGCGTCGGCAAGGAACGATGACCACCGATGAGAACAAACAGTTCG
ATCGGGGACGGAAGAAGGAGAGGCTGTTCGTTTCCCAGTTGGGAGCGGCC
GCGCTTGGCCCATTTTTTGTTTTCTGTGTTTGTCTTCCTGTTGCCTGTGT
TTTCCTGCTCTGTCTGTATTTTTGCACAAATTCTTATTTCCCCCACCCAG
GTGATCAATCAAATTTTCTGACTAGCTGGTGCGAGCGGCGGTCCGAGCCC
TGAGCCCCAACCTTATGAAGATCGCGACGTCACT
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Coding sequence (CDS) from alignment at F-serratus_M_contig1384:121905..123388+

>mRNA_F-serratus_M_contig1384.2775.1 ID=mRNA_F-serratus_M_contig1384.2775.1|Name=mRNA_F-serratus_M_contig1384.2775.1|organism=Fucus serratus male|type=CDS|length=258bp|location=Sequence derived from alignment at F-serratus_M_contig1384:121905..123388+ (Fucus serratus male)
TCCGCTGGAGTAAGGAGATACATTTTTATAGCTGGGAACCGGGCGCTGGA
ACTGGAGCAGACGCCAAAAATACACTTCCGCTGGAGTAAGGAGATACATT
TTTATAGCTGGGAACCGGGCGCTGGAACTGGAGCAGACGCCAAAAATACA
CTGTGATCAATCAAATTTTCTGACTAGCTGGTGCGAGCGGCGGTCCGAGC
CCTGAGTGATCAATCAAATTTTCTGACTAGCTGGTGCGAGCGGCGGTCCG
AGCCCTGA
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