mRNA_F-serratus_M_contig1379.2751.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1379.2751.1
Unique NamemRNA_F-serratus_M_contig1379.2751.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1379.2751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1379contigF-serratus_M_contig1379:165452..165819 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size370
Cds size366
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.5136771-CDS-F-serratus_M_contig1379:165451..1658171622929357.5136771-CDS-F-serratus_M_contig1379:165451..165817Fucus serratus maleCDSF-serratus_M_contig1379 165452..165817 +
1690962814.3622181-CDS-F-serratus_M_contig1379:165451..1658171690962814.3622181-CDS-F-serratus_M_contig1379:165451..165817Fucus serratus maleCDSF-serratus_M_contig1379 165452..165817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1379.2751.1prot_F-serratus_M_contig1379.2751.1Fucus serratus malepolypeptideF-serratus_M_contig1379 165452..165817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1379.2751.1

>prot_F-serratus_M_contig1379.2751.1 ID=prot_F-serratus_M_contig1379.2751.1|Name=mRNA_F-serratus_M_contig1379.2751.1|organism=Fucus serratus male|type=polypeptide|length=122bp
HFLVHVEDLRRSPHAVLSIHSHRPHIMGSDDEFLSTGSVTVVARLSSCCP
PSRSPSPPFFPRKCTVIVHTLLSSNFCPRSRLSFGLARRVRLSLPASVRP
SYTPEPCLVLTHGRLSFLPLSA
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mRNA from alignment at F-serratus_M_contig1379:165452..165819+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1379.2751.1 ID=mRNA_F-serratus_M_contig1379.2751.1|Name=mRNA_F-serratus_M_contig1379.2751.1|organism=Fucus serratus male|type=mRNA|length=368bp|location=Sequence derived from alignment at F-serratus_M_contig1379:165452..165819+ (Fucus serratus male)
CATTTCTTGGTACACGTCGAGGACCTCCGCCGCTCTCCCCACGCCGTGCT
TTCCATCCACAGCCATCGTCCACACATTATGGGTAGCGATGATGAGTTCC
TTTCTACGGGCTCGGTCACGGTCGTTGCTCGATTGTCGTCGTGCTGCCCG
CCGTCTCGTTCTCCCTCTCCGCCTTTTTTCCCTAGAAAATGTACAGTTAT
TGTACATACACTTCTGTCCTCGAATTTCTGCCCCCGTTCGCGCCTGAGTT
TTGGTCTCGCGAGGAGGGTTCGGCTCTCCCTCCCCGCGTCGGTTCGCCCA
TCTTACACGCCCGAGCCATGTCTGGTGCTTACTCACGGGCGCCTCTCCTT
CCTCCCGCTTTCCGCGAC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1379:165452..165819+

>mRNA_F-serratus_M_contig1379.2751.1 ID=mRNA_F-serratus_M_contig1379.2751.1|Name=mRNA_F-serratus_M_contig1379.2751.1|organism=Fucus serratus male|type=CDS|length=732bp|location=Sequence derived from alignment at F-serratus_M_contig1379:165452..165819+ (Fucus serratus male)
CATTTCTTGGTACACGTCGAGGACCTCCGCCGCTCTCCCCACGCCGTGCT
TTCCATCCACAGCCATCGTCCACACATTATGGGTAGCGATGATGAGTTCC
TTTCTACGGGCTCGGTCACGGTCGTTGCTCGATTGTCGTCGTGCTGCCCG
CCGTCTCGTTCTCCCTCTCCGCCTTTTTTCCCTAGAAAATGTACAGTTAT
TGTACATACACTTCTGTCCTCGAATTTCTGCCCCCGTTCGCGCCTGAGTT
TTGGTCTCGCGAGGAGGGTTCGGCTCTCCCTCCCCGCGTCGGTTCGCCCA
TCTTACACGCCCGAGCCATGTCTGGTGCTTACTCACGGGCGCCTCTCCTT
CCTCCCGCTTTCCGCGCATTTCTTGGTACACGTCGAGGACCTCCGCCGCT
CTCCCCACGCCGTGCTTTCCATCCACAGCCATCGTCCACACATTATGGGT
AGCGATGATGAGTTCCTTTCTACGGGCTCGGTCACGGTCGTTGCTCGATT
GTCGTCGTGCTGCCCGCCGTCTCGTTCTCCCTCTCCGCCTTTTTTCCCTA
GAAAATGTACAGTTATTGTACATACACTTCTGTCCTCGAATTTCTGCCCC
CGTTCGCGCCTGAGTTTTGGTCTCGCGAGGAGGGTTCGGCTCTCCCTCCC
CGCGTCGGTTCGCCCATCTTACACGCCCGAGCCATGTCTGGTGCTTACTC
ACGGGCGCCTCTCCTTCCTCCCGCTTTCCGCG
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