mRNA_F-serratus_M_contig1378.2746.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1378.2746.1
Unique NamemRNA_F-serratus_M_contig1378.2746.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1378.2746.1 vs. uniprot
Match: M1EYI5_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=Fucales TaxID=3009 RepID=M1EYI5_9PHAE)

HSP 1 Score: 371 bits (952), Expect = 1.120e-125
Identity = 204/298 (68.46%), Postives = 224/298 (75.17%), Query Frame = 1 
Query:    1 GFGKWSVPLMIGAPEMAFPRTNNISYWLLPPSLILLLASS*VEEGAGTGWTVYPPLSGIQAHSKSLVDLAIFIFHFSGAASILGVINLVTTIL-IYVPRV*VCIVYLYLFGRF*LQHSYLLCYRFLF*PTALLCC*LIEILILSFSIQLAGGRDPVL*QLLFCFFGHP*VYI*TLPGFRIVSHILGTFPRRPDFGYLGMVYYAILSSSILGFMVWAHHMFTVGLDIDARAYFTTATMIIAVPAGI*LFSWIATMWGDSSRLKTPTLFAIGFIFLFTIGGLTGVVLANSGVDIALHDTH 891
            GFG W VPLMIGAP+MAFPR NNIS+WLLPPSLILLLASS VE GAGTGWTVYPPLSGIQAHS   VDLAIF  H SGAASILG IN +TTI  +  P + +  + L+++         LL    L     +L   L +    +     AGG DPVL Q LF FFGHP VYI  LPGF IVSHIL TF R+P FGYLGMVY A+LS  ILGF+VWAHHMFTVGLDID RAYFT ATMIIAVP GI +FSWIATMWG S RLKTP LF+IGF+FLFTIGGLTGVVLANSGVDIALHDT+
Sbjct:   48 GFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSPVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMGMHRLPLFVWSVLITAFLLLLSLPVLAGGITML---LTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVY-AMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTY 341
[Close]
BLAST of mRNA_F-serratus_M_contig1378.2746.1 vs. uniprot
Match: M1F017_SARFS (Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=Fucales TaxID=3009 RepID=M1F017_SARFS)

HSP 1 Score: 369 bits (947), Expect = 2.740e-124
Identity = 202/300 (67.33%), Postives = 224/300 (74.67%), Query Frame = 1 
Query:    1 GFGKWSVPLMIGAPEMAFPRTNNISYWLLPPSLILLLASS*VEEGAGTGWTVYPPLSGIQAHSKSLVDLAIFIFHFSGAASILGVINLVTTIL-IYVPRV*VCIVYLYLFGRF*LQHSYLLCYRFLF*PTALLCC*LIEILILSFSIQLAGGRDPVL*QLLFCFFGHP*VYI*TLPGFRIVSHILGTFPRRPDFGYLGMVYYAILSSSILGFMVWAHHMFTVGLDIDARAYFTTATMIIAVPAGI*LFSWIATMWGDSSRLKTPTLFAIGFIFLFTIGGLTGVVLANSGVDIALHDTHTI 897
            GFG W VPLMIGAP+MAFPR NNIS+WLLPPSLILLLASS VE GAGTGWTVYPPLSGIQAHS   VDLAIF  H SGAASILG IN + TI  +  P + +  + L+++         LL    L     +L   L +    +     AGG DPVL Q LF FFGHP VYI  LPGF IVSHIL TF R+P FGYLGMVY A+LS  ILGF+VWAHHMFTVGLDID RAYFT ATMIIAVP GI +FSW+ATMWG S RLKTP LF+IGF+FLFTIGGLTGVVLANSGVDIALHDT+ +
Sbjct:   48 GFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFIATIFNMRAPGMGMHRLPLFVWSVLITAFLLLLSLPVLAGGITML---LTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVY-AMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWVATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYV 343
[Close]
BLAST of mRNA_F-serratus_M_contig1378.2746.1 vs. uniprot
Match: A0A0U4ZTN0_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U4ZTN0_9PHAE)

HSP 1 Score: 369 bits (947), Expect = 1.170e-123
Identity = 203/299 (67.89%), Postives = 224/299 (74.92%), Query Frame = 1 
Query:    4 FGKWSVPLMIGAPEMAFPRTNNISYWLLPPSLILLLASS*VEEGAGTGWTVYPPLSGIQAHSKSLVDLAIFIFHFSGAASILGVINLVTTIL-IYVPRV*VCIVYLYLFGRF*LQHSYLLCYRFLF*PTALLCC*LIEILILSFSIQLAGGRDPVL*QLLFCFFGHP*VYI*TLPGFRIVSHILGTFPRRPDFGYLGMVYYAILSSSILGFMVWAHHMFTVGLDIDARAYFTTATMIIAVPAGI*LFSWIATMWGDSSRLKTPTLFAIGFIFLFTIGGLTGVVLANSGVDIALHDTHTI 897
            FG W VPLMIGAP+MAFPR NNIS+WLLPPSLILLLASS VE GAGTGWTVYPPLSGIQAHS   VDLAIF  H SGAASILG IN +TTI  +  P + +  + L+++         LL    L     +L   L +    +     AGG DPVL Q LF FFGHP VYI  LPGF IVSHIL TF R+P FGYLGMVY A+LS  ILGF+VWAHHMFTVGLDID RAYFT ATMIIAVP GI +FSWIAT+WG S RLKTP LFAIGF+FLFTIGGLTGVVLANSGVDIALHDT+ +
Sbjct:    1 FGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVETGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMSMHRLPLFVWSVLITAFLLLLSLPVLAGGITML---LTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILSTFARKPVFGYLGMVY-AMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATLWGGSIRLKTPMLFAIGFLFLFTIGGLTGVVLANSGVDIALHDTYYV 295
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BLAST of mRNA_F-serratus_M_contig1378.2746.1 vs. uniprot
Match: A0A1L6KY02_9PHAE (Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum fluitans TaxID=143163 RepID=A0A1L6KY02_9PHAE)

HSP 1 Score: 371 bits (953), Expect = 3.370e-123
Identity = 204/300 (68.00%), Postives = 225/300 (75.00%), Query Frame = 1 
Query:    1 GFGKWSVPLMIGAPEMAFPRTNNISYWLLPPSLILLLASS*VEEGAGTGWTVYPPLSGIQAHSKSLVDLAIFIFHFSGAASILGVINLVTTIL-IYVPRV*VCIVYLYLFGRF*LQHSYLLCYRFLF*PTALLCC*LIEILILSFSIQLAGGRDPVL*QLLFCFFGHP*VYI*TLPGFRIVSHILGTFPRRPDFGYLGMVYYAILSSSILGFMVWAHHMFTVGLDIDARAYFTTATMIIAVPAGI*LFSWIATMWGDSSRLKTPTLFAIGFIFLFTIGGLTGVVLANSGVDIALHDTHTI 897
            GFG W VPLMIGAP+MAFPR NNIS+WLLPPSLILLLASS VE GAGTGWTVYPPLSGIQAHS   VDLAIF  H SGAASILG IN +TTI  +  P + +  + L+++         LL    L     +L   L +    +     AGG DPVL Q LF FFGHP VYI  LPGF IVSHIL TF R+P FGYLGMVY A+LS  ILGF+VWAHHMFTVGLDID RAYFT ATMIIAVP GI +FSWIATMWG S RLKTP LF+IGF+FLFTIGGLTGVVLANSGVDIALHDT+ +
Sbjct:  103 GFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMGMHRLPLFVWSVLITAFLLLLSLPVLAGGITML---LTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVY-AMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYV 398
[Close]
BLAST of mRNA_F-serratus_M_contig1378.2746.1 vs. uniprot
Match: D4HL93_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=24 Tax=Fucales TaxID=3009 RepID=D4HL93_9PHAE)

HSP 1 Score: 367 bits (942), Expect = 4.820e-123
Identity = 202/300 (67.33%), Postives = 223/300 (74.33%), Query Frame = 1 
Query:    1 GFGKWSVPLMIGAPEMAFPRTNNISYWLLPPSLILLLASS*VEEGAGTGWTVYPPLSGIQAHSKSLVDLAIFIFHFSGAASILGVINLVTTIL-IYVPRV*VCIVYLYLFGRF*LQHSYLLCYRFLF*PTALLCC*LIEILILSFSIQLAGGRDPVL*QLLFCFFGHP*VYI*TLPGFRIVSHILGTFPRRPDFGYLGMVYYAILSSSILGFMVWAHHMFTVGLDIDARAYFTTATMIIAVPAGI*LFSWIATMWGDSSRLKTPTLFAIGFIFLFTIGGLTGVVLANSGVDIALHDTHTI 897
            GFG W VPLMIGAP+MAFPR NNIS+WLLPPSLILLLASS VE GAGTGWTVYPPLSGIQAHS   VDLAIF  H SGAASILG IN +TTI  +  P + +  + L+++         LL    L     +L   L +    +     AGG DPVL Q L   FGHP VYI  LPGF IVSHIL TF R+P FGYLGMVY A+LS  ILGF+VWAHHMFTVGLDID RAYFT ATMIIAVP GI +FSWIATMWG S RLKTP LF+IGF+FLFTIGGLTGVVLANSGVDIALHDT+ +
Sbjct:   62 GFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGISMHRLPLFVWSVLITAFLLLLSLPVLAGGITML---LTDRNFNTTFFDPAGGGDPVLYQHLXXXFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVY-AMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYV 357
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BLAST of mRNA_F-serratus_M_contig1378.2746.1 vs. uniprot
Match: A0A0U1XAH8_SARHM (Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyceae TaxID=2870 RepID=A0A0U1XAH8_SARHM)

HSP 1 Score: 370 bits (950), Expect = 9.570e-123
Identity = 203/300 (67.67%), Postives = 225/300 (75.00%), Query Frame = 1 
Query:    1 GFGKWSVPLMIGAPEMAFPRTNNISYWLLPPSLILLLASS*VEEGAGTGWTVYPPLSGIQAHSKSLVDLAIFIFHFSGAASILGVINLVTTIL-IYVPRV*VCIVYLYLFGRF*LQHSYLLCYRFLF*PTALLCC*LIEILILSFSIQLAGGRDPVL*QLLFCFFGHP*VYI*TLPGFRIVSHILGTFPRRPDFGYLGMVYYAILSSSILGFMVWAHHMFTVGLDIDARAYFTTATMIIAVPAGI*LFSWIATMWGDSSRLKTPTLFAIGFIFLFTIGGLTGVVLANSGVDIALHDTHTI 897
            GFG W VPLMIGAP+MAFPR NNIS+WLLPPSL+LLLASS VE GAGTGWTVYPPLSGIQAHS   VDLAIF  H SGAASILG IN +TTI  +  P + +  + L+++         LL    L     +L   L +    +     AGG DPVL Q LF FFGHP VYI  LPGF IVSHIL TF R+P FGYLGMVY A+LS  ILGF+VWAHHMFTVGLDID RAYFT ATMIIAVP GI +FSWIATMWG S RLKTP LF+IGF+FLFTIGGLTGVVLANSGVDIALHDT+ +
Sbjct:  103 GFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLMLLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMGMHRLPLFVWSVLITAFLLLLSLPVLAGGITML---LTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVY-AMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATMWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYV 398
[Close]
BLAST of mRNA_F-serratus_M_contig1378.2746.1 vs. uniprot
Match: E6ZES6_ECTSI (Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyceae TaxID=2870 RepID=E6ZES6_ECTSI)

HSP 1 Score: 370 bits (949), Expect = 1.440e-122
Identity = 201/300 (67.00%), Postives = 225/300 (75.00%), Query Frame = 1 
Query:    1 GFGKWSVPLMIGAPEMAFPRTNNISYWLLPPSLILLLASS*VEEGAGTGWTVYPPLSGIQAHSKSLVDLAIFIFHFSGAASILGVINLVTTIL-IYVPRV*VCIVYLYLFGRF*LQHSYLLCYRFLF*PTALLCC*LIEILILSFSIQLAGGRDPVL*QLLFCFFGHP*VYI*TLPGFRIVSHILGTFPRRPDFGYLGMVYYAILSSSILGFMVWAHHMFTVGLDIDARAYFTTATMIIAVPAGI*LFSWIATMWGDSSRLKTPTLFAIGFIFLFTIGGLTGVVLANSGVDIALHDTHTI 897
            GFG W VPLMIGAP+MAFPR NNIS+WLLPPSLILLLASS VE GAGTGWTVYPPLSGIQAHS   VDLAIF  H SGAASILG IN +TTI  +  P + +  + L+++         LL    L     +L   L +    +     AGG DPVL Q LF FFGHP VYI  LPGF I+SHIL TF R+P FGYLGMVY A+LS  ILGF+VWAHHMFTVGLDID RAYFT ATMIIAVP GI +FSWIAT+WG S RLKTP LF+IGF+FLFTIGGLTGVVLANSG+DIALHDT+ +
Sbjct:  104 GFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVESGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMDRLPLFVWSVLITAFLLLLSLPVLAGGITML---LTDRNFNTTFFDPAGGGDPVLYQHLFWFFGHPEVYILILPGFGIISHILSTFARKPVFGYLGMVY-AMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATLWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGIDIALHDTYYV 399
[Close]
BLAST of mRNA_F-serratus_M_contig1378.2746.1 vs. uniprot
Match: D6MQN4_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=15 Tax=Phaeophyceae TaxID=2870 RepID=D6MQN4_9PHAE)

HSP 1 Score: 365 bits (937), Expect = 2.760e-122
Identity = 201/300 (67.00%), Postives = 223/300 (74.33%), Query Frame = 1 
Query:    1 GFGKWSVPLMIGAPEMAFPRTNNISYWLLPPSLILLLASS*VEEGAGTGWTVYPPLSGIQAHSKSLVDLAIFIFHFSGAASILGVINLVTTIL-IYVPRV*VCIVYLYLFGRF*LQHSYLLCYRFLF*PTALLCC*LIEILILSFSIQLAGGRDPVL*QLLFCFFGHP*VYI*TLPGFRIVSHILGTFPRRPDFGYLGMVYYAILSSSILGFMVWAHHMFTVGLDIDARAYFTTATMIIAVPAGI*LFSWIATMWGDSSRLKTPTLFAIGFIFLFTIGGLTGVVLANSGVDIALHDTHTI 897
            GFG W VPLMIGAP+MAFPR NNIS+WLLPPSLILLLASS VE GAGTGWTVYPPLSGIQAHS   VDLAIF  H SGAASILG IN +TTI  +  P + +  + L+++         LL    L     +L   L +    +     AGG DPVL Q L   FGHP VYI  LPGF IVSHIL TF R+P FGYLGMVY A+LS  ILGF+VWAHHMFTVGLDID RAYFT ATMIIAVP GI +FSWIAT+WG S RLKTP LF+IGF+FLFTIGGLTGVVLANSGVDIALHDT+ +
Sbjct:   62 GFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMSMHRLPLFVWSVLITAFLLLLSLPVLAGGITML---LTDRNFNTTFFDPAGGGDPVLYQHLXXXFGHPEVYILILPGFGIVSHILSTFSRKPVFGYLGMVY-AMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATLWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYV 357
[Close]
BLAST of mRNA_F-serratus_M_contig1378.2746.1 vs. uniprot
Match: D4HLA4_PETFA (Cytochrome c oxidase subunit 1 (Fragment) n=12 Tax=Ectocarpales TaxID=2877 RepID=D4HLA4_PETFA)

HSP 1 Score: 365 bits (936), Expect = 3.910e-122
Identity = 199/300 (66.33%), Postives = 223/300 (74.33%), Query Frame = 1 
Query:    1 GFGKWSVPLMIGAPEMAFPRTNNISYWLLPPSLILLLASS*VEEGAGTGWTVYPPLSGIQAHSKSLVDLAIFIFHFSGAASILGVINLVTTIL-IYVPRV*VCIVYLYLFGRF*LQHSYLLCYRFLF*PTALLCC*LIEILILSFSIQLAGGRDPVL*QLLFCFFGHP*VYI*TLPGFRIVSHILGTFPRRPDFGYLGMVYYAILSSSILGFMVWAHHMFTVGLDIDARAYFTTATMIIAVPAGI*LFSWIATMWGDSSRLKTPTLFAIGFIFLFTIGGLTGVVLANSGVDIALHDTHTI 897
            GFG W VPLMIGAP+MAFPR NNIS+WLLPPSLILLLASS VE GAGTGWTVYPPLSGIQAHS   VDLAIF  H SGAASILG IN +TTI  +  P + +  + L+++         LL    L     +L   L +    +     AGG DPVL Q L   FGHP VYI  LPGF IVSH+L TF R+P FGYLGMVY A+LS  ILGF+VWAHHMFTVGLDID RAYFT ATMIIAVP GI +FSWIAT+WG S RLKTP LF+IGF+FLFTIGGLTGVVLANSG+DIALHDT+ +
Sbjct:   62 GFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVESGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMTMDRLPLFVWSVLITAFLLLLSLPVLAGGITML---LTDRNFNTTFFDPAGGGDPVLYQHLXXXFGHPEVYILILPGFGIVSHVLATFARKPVFGYLGMVY-AMLSIGILGFIVWAHHMFTVGLDIDTRAYFTAATMIIAVPTGIKIFSWIATLWGGSIRLKTPMLFSIGFLFLFTIGGLTGVVLANSGIDIALHDTYYV 357
[Close]
BLAST of mRNA_F-serratus_M_contig1378.2746.1 vs. uniprot
Match: D4HL86_9PHAE (Cytochrome c oxidase subunit 1 (Fragment) n=25 Tax=Phaeophyceae TaxID=2870 RepID=D4HL86_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 1.110e-121
Identity = 199/300 (66.33%), Postives = 224/300 (74.67%), Query Frame = 1 
Query:    1 GFGKWSVPLMIGAPEMAFPRTNNISYWLLPPSLILLLASS*VEEGAGTGWTVYPPLSGIQAHSKSLVDLAIFIFHFSGAASILGVINLVTTIL-IYVPRV*VCIVYLYLFGRF*LQHSYLLCYRFLF*PTALLCC*LIEILILSFSIQLAGGRDPVL*QLLFCFFGHP*VYI*TLPGFRIVSHILGTFPRRPDFGYLGMVYYAILSSSILGFMVWAHHMFTVGLDIDARAYFTTATMIIAVPAGI*LFSWIATMWGDSSRLKTPTLFAIGFIFLFTIGGLTGVVLANSGVDIALHDTHTI 897
            GFG W VPLMIGAP+MAFPR NNIS+WLLPPSLILLLASS VE GAGTGWTVYPPLSGIQAHS   VDLAIF  H SGAASILG IN +TTI  +  P + +  + L+++         LL    L     +L   L +    +     AGG DPV+ Q L   FGHP VYI  LPGF IVSHIL TF R+P FGYLGMVY A+LS  ILGF+VWAHHMFTVGLDID RAYFT+ATMIIAVP GI +FSWIAT+WG S R+KTP LF+IGF+FLFTIGGLTGVVLANSGVDIALHDT+ +
Sbjct:   62 GFGNWFVPLMIGAPDMAFPRMNNISFWLLPPSLILLLASSLVEAGAGTGWTVYPPLSGIQAHSGPSVDLAIFSLHLSGAASILGAINFITTIFNMRAPGMSMHRLPLFVWSVLITAFLLLLSLPVLAGGITML---LTDRNFNTTFFDPAGGGDPVVYQHLXXXFGHPEVYILILPGFGIVSHILATFSRKPVFGYLGMVY-AMLSIGILGFIVWAHHMFTVGLDIDTRAYFTSATMIIAVPTGIKIFSWIATLWGGSIRMKTPMLFSIGFLFLFTIGGLTGVVLANSGVDIALHDTYYV 357
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1378.2746.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
M1EYI5_9PHAE1.120e-12568.46Cytochrome c oxidase subunit 1 (Fragment) n=7 Tax=... [more]
M1F017_SARFS2.740e-12467.33Cytochrome c oxidase subunit 1 (Fragment) n=4 Tax=... [more]
A0A0U4ZTN0_9PHAE1.170e-12367.89Cytochrome c oxidase subunit 1 (Fragment) n=8 Tax=... [more]
A0A1L6KY02_9PHAE3.370e-12368.00Cytochrome c oxidase subunit 1 n=1 Tax=Sargassum f... [more]
D4HL93_9PHAE4.820e-12367.33Cytochrome c oxidase subunit 1 (Fragment) n=24 Tax... [more]
A0A0U1XAH8_SARHM9.570e-12367.67Cytochrome c oxidase subunit 1 n=118 Tax=Phaeophyc... [more]
E6ZES6_ECTSI1.440e-12267.00Cytochrome c oxidase subunit 1 n=691 Tax=Phaeophyc... [more]
D6MQN4_9PHAE2.760e-12267.00Cytochrome c oxidase subunit 1 (Fragment) n=15 Tax... [more]
D4HLA4_PETFA3.910e-12266.33Cytochrome c oxidase subunit 1 (Fragment) n=12 Tax... [more]
D4HL86_9PHAE1.110e-12166.33Cytochrome c oxidase subunit 1 (Fragment) n=25 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1378contigF-serratus_M_contig1378:6487..7383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score74.7
Seed ortholog evalue1.3e-11
Seed eggNOG ortholog4565.Traes_6DS_4DAA0A508.1
Preferred nameCOX1
KEGG koko:K02256
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006091,GO:0006119,GO:0006123,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0009060,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015672,GO:0015980,GO:0015988,GO:0015990,GO:0016020,GO:0016310,GO:0017144,GO:0019637,GO:0019646,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0034220,GO:0034641,GO:0042773,GO:0042775,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0046034,GO:0046483,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0055114,GO:0071704,GO:0072521,GO:0098655,GO:0098660,GO:0098662,GO:1901135,GO:1901360,GO:1901564,GO:1902600
EggNOG free text desc.Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
EggNOG OGs37QZZ@33090,3GEEJ@35493,COG0843@1,COG1290@1,KOG4663@2759,KOG4769@2759
EC1.9.3.1
COG Functional cat.C
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029
Exons1
Model size897
Cds size144
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1378.2746.1prot_F-serratus_M_contig1378.2746.1Fucus serratus malepolypeptideF-serratus_M_contig1378 7078..7221 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.3377936-UTR-F-serratus_M_contig1378:6486..70771622929357.3377936-UTR-F-serratus_M_contig1378:6486..7077Fucus serratus maleUTRF-serratus_M_contig1378 6487..7077 +
1690962814.2757845-UTR-F-serratus_M_contig1378:6486..70771690962814.2757845-UTR-F-serratus_M_contig1378:6486..7077Fucus serratus maleUTRF-serratus_M_contig1378 6487..7077 +
1622929357.3665493-UTR-F-serratus_M_contig1378:7221..73831622929357.3665493-UTR-F-serratus_M_contig1378:7221..7383Fucus serratus maleUTRF-serratus_M_contig1378 7222..7383 +
1690962814.2971637-UTR-F-serratus_M_contig1378:7221..73831690962814.2971637-UTR-F-serratus_M_contig1378:7221..7383Fucus serratus maleUTRF-serratus_M_contig1378 7222..7383 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929357.354316-CDS-F-serratus_M_contig1378:7077..72211622929357.354316-CDS-F-serratus_M_contig1378:7077..7221Fucus serratus maleCDSF-serratus_M_contig1378 7078..7221 +
1690962814.2885594-CDS-F-serratus_M_contig1378:7077..72211690962814.2885594-CDS-F-serratus_M_contig1378:7077..7221Fucus serratus maleCDSF-serratus_M_contig1378 7078..7221 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1378.2746.1

>prot_F-serratus_M_contig1378.2746.1 ID=prot_F-serratus_M_contig1378.2746.1|Name=mRNA_F-serratus_M_contig1378.2746.1|organism=Fucus serratus male|type=polypeptide|length=48bp
MVYYAILSSSILGFMVWAHHMFTVGLDIDARAYFTTATMIIAVPAGI*
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mRNA from alignment at F-serratus_M_contig1378:6487..7383+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1378.2746.1 ID=mRNA_F-serratus_M_contig1378.2746.1|Name=mRNA_F-serratus_M_contig1378.2746.1|organism=Fucus serratus male|type=mRNA|length=897bp|location=Sequence derived from alignment at F-serratus_M_contig1378:6487..7383+ (Fucus serratus male)
GGTTTTGGCAAATGGTCTGTACCTTTAATGATCGGTGCTCCTGAGATGGC
GTTTCCGCGTACGAATAACATAAGCTATTGGCTGTTGCCCCCGTCACTAA
TTCTTCTTTTGGCGTCTTCTTAGGTTGAGGAGGGAGCAGGTACCGGGTGG
ACTGTTTACCCGCCGCTTAGTGGTATTCAGGCGCACTCAAAATCATTAGT
TGACTTAGCTATATTCATTTTTCACTTTTCAGGTGCAGCCTCTATTTTAG
GTGTTATTAATTTAGTTACAACTATTTTAATATACGTGCCCCGGGTATGA
GTATGCATCGTTTACCTTTACTTGTTTGGCCGGTTTTAATTACAACACTC
TTACCTATTATGCTATCGCTTCCTGTTTTAGCCGACGGCATTGCTATGCT
GTTAACTGATAGAAATTTTAATACTAAGTTTTTCTATCCAGCTAGCTGGT
GGTCGTGATCCTGTTCTTTAGCAACTTCTATTTTGTTTTTTTGGACACCC
ATAAGTTTATATTTAAACCTTGCCTGGTTTTCGTATCGTTAGTCACATCT
TAGGTACTTTTCCCAGAAGGCCTGATTTTGGTTATTTGGGGATGGTTTAT
TATGCGATACTTTCTAGTAGTATTCTTGGATTTATGGTGTGGGCTCATCA
CATGTTTACTGTAGGATTAGATATTGATGCTCGTGCTTATTTTACCACAG
CTACTATGATTATTGCAGTTCCTGCTGGTATTTAACTTTTTAGTTGGATT
GCCACTATGTGGGGAGATTCTAGTAGACTTAAAACACCTACGTTGTTTGC
TATAGGTTTCATTTTTTTATTTACCATTGGCGGTTTAACCGGTGTGGTAT
TAGCAAATTCAGGTGTTGATATTGCTCTTCACGATACTCATACTATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1378:6487..7383+

>mRNA_F-serratus_M_contig1378.2746.1 ID=mRNA_F-serratus_M_contig1378.2746.1|Name=mRNA_F-serratus_M_contig1378.2746.1|organism=Fucus serratus male|type=CDS|length=288bp|location=Sequence derived from alignment at F-serratus_M_contig1378:6487..7383+ (Fucus serratus male)
ATGGTTTATTATGCGATACTTTCTAGTAGTATTCTTGGATTTATGGTGTG
GGCTCATCACATGTTTACTGTAGGATTAGATATTGATGCTCGTGCTTATT
TTACCACAGCTACTATGATTATTGCAGTTCCTGCTGGTATTTAAATGGTT
TATTATGCGATACTTTCTAGTAGTATTCTTGGATTTATGGTGTGGGCTCA
TCACATGTTTACTGTAGGATTAGATATTGATGCTCGTGCTTATTTTACCA
CAGCTACTATGATTATTGCAGTTCCTGCTGGTATTTAA
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