mRNA_F-serratus_M_contig1375.2735.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1375.2735.1
Unique NamemRNA_F-serratus_M_contig1375.2735.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
BLAST of mRNA_F-serratus_M_contig1375.2735.1 vs. uniprot
Match: A0A6H5L5U2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5U2_9PHAE)

HSP 1 Score: 314 bits (804), Expect = 1.400e-99
Identity = 176/373 (47.18%), Postives = 223/373 (59.79%), Query Frame = 3
Query:  336 PGYETYEKS-GVQFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCVYL--------------------------LCKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYADDILERDVMPNCNVAFTPGVGPKIYFDQPADRLLDEQRKPRRS-------------RYDIFYAINQLARAIFKPSKAHMGAAKHVLRYLTGCVNFPITYRRGGFTLMAYTDANKRGHLGNGRLTSSYIMMLANGPIIFKVGLQSLIAQSTREAELVATATTTKGSLFCRNMMMELGFTEGFSSVHVYIDNISTLHVVGNRRFSPRAKYIVLRYVFVQELMKKGKATIHFVKTEQQLADLGTKHLKK 1334
            PG+E  +K  G   VMK+ KS Y   QSP NWF T+D  +  IGF +LKSDPCVYL                          +  +K +L  RFKMT LG+AS VLGM + RD+E   +TI Q+ Y   ILER  M       TPG G +I   QP D LLDE+   +               RYDI YA  QLAR + KPSK HM AAKH LRYL G ++F ITY++GGF L  ++D+N   +  NG+ TSSY+ MLAN P+ F+ GLQ L A ST EAELVA+A   K ++FC NMM ELGF + F+ + VY DN +TLH +GNR FS R K+I LR+ F++EL+ +GK +IH+  TE  LAD+GTKH  K
Sbjct:   50 PGFEVKDKEDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVIVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYFPTEDNLADIGTKHFNK 422          
BLAST of mRNA_F-serratus_M_contig1375.2735.1 vs. uniprot
Match: A0A6H5JME8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JME8_9PHAE)

HSP 1 Score: 310 bits (795), Expect = 1.190e-95
Identity = 175/385 (45.45%), Postives = 222/385 (57.66%), Query Frame = 3
Query:  336 PGYETYEKSGVQFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCVYL---------------------------------------LCKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYADDILERDVMPNCNVAFTPGVGPKIYFDQPADRLLDEQRKPRRS-------------RYDIFYAINQLARAIFKPSKAHMGAAKHVLRYLTGCVNFPITYRRGGFTLMAYTDANKRGHLGNGRLTSSYIMMLANGPIIFKVGLQSLIAQSTREAELVATATTTKGSLFCRNMMMELGFTEGFSSVHVYIDNISTLHVVGNRRFSPRAKYIVLRYVFVQELMKKGKATIHFVKTEQQLADLGTKHLKK 1334
            PG+E  +K G   VMK+ KS Y   QSP NWF T+D  L  IGF +LKSDPCVYL                                       + +   +L  RFKMT LG+AS  LGM + RD+E   +TI Q+ Y   ILER  M       TPG G +I   QP D LLDE+   +               RYDI YA  QLAR++ KPSK HM AAKH LRYL G ++F ITY++GGF L  ++D+N   +  NG+ TSSY+ MLAN P+ F+ GLQ L A ST EAELVA+A   K ++FC NMM ELG  + F+ + VY DN +TLH +GNR FS R K+I LR+ F++EL+ +GK +IH+V TE  LAD+GTKH  K
Sbjct:  259 PGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAIKHLLSSGWKLGGIARQXGKLQKRFKMTDLGEASFALGMKIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARSMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGSGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNK 643          
BLAST of mRNA_F-serratus_M_contig1375.2735.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 308 bits (788), Expect = 1.100e-91
Identity = 172/360 (47.78%), Postives = 217/360 (60.28%), Query Frame = 3
Query:  363 GVQFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCVYL--------------------------LCKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYADDILERDVMPNCNVAFTPGVGPKIYFDQPADRLLDEQRKPRRS-------------RYDIFYAINQLARAIFKPSKAHMGAAKHVLRYLTGCVNFPITYRRGGFTLMAYTDANKRGHLGNGRLTSSYIMMLANGPIIFKVGLQSLIAQSTREAELVATATTTKGSLFCRNMMMELGFTEGFSSVHVYIDNISTLHVVGNRRFSPRAKYIVLRYVFVQELMKKGKATIHFVKTEQQLADLGTKH 1325
            G   VMK+ KS Y   QSP NWF T+D  L  IGF +LKSDPCVYL                          +  +K +L  RFKMT LG+AS VL M + RD+E   +TI Q+ Y   ILER  M       TPG G +I   QP D LLDE+   +               RYDI YA  QLAR + KPSK HM AAKH LRYL G ++F ITY++GGF L  ++D+N   +  NG+ TSSY+ MLAN P+ F+ GLQ L A ST EAELVA+A   K ++FC NMM ELGF + F+ + VY DN +TLH +GNR FS R K+I LR+ F++EL+ +GK +IH+V+TE  LAD+GTKH
Sbjct:  620 GGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLRMEIRRDREANTLTISQEAYCKSILERFGMSGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTMLANAPMSFRSGLQGLTAMSTMEAELVASALAMKEAVFCSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVRTEDNLADIGTKH 979          
BLAST of mRNA_F-serratus_M_contig1375.2735.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 312 bits (799), Expect = 4.240e-91
Identity = 174/372 (46.77%), Postives = 222/372 (59.68%), Query Frame = 3
Query:  336 PGYETYEKSGVQFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCVYL--------------------------LCKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYADDILERDVMPNCNVAFTPGVGPKIYFDQPADRLLDEQRKPRRS-------------RYDIFYAINQLARAIFKPSKAHMGAAKHVLRYLTGCVNFPITYRRGGFTLMAYTDANKRGHLGNGRLTSSYIMMLANGPIIFKVGLQSLIAQSTREAELVATATTTKGSLFCRNMMMELGFTEGFSSVHVYIDNISTLHVVGNRRFSPRAKYIVLRYVFVQELMKKGKATIHFVKTEQQLADLGTKHLKK 1334
            PG+E  +K G   VMK+ KS Y   QSP NWF T+D  L  IGF +LKSDPCVYL                          +  +K +L  RFKMT LG+AS VLGM + RD+E   +TI Q+ Y   ILER  +       TPG G +I   QP D LLDE+   +               RYDI YA  QLAR + KPSK HM AAKH LRYL G ++F ITY++GGF L  ++D+N   +  NG+ TSSY+ +LAN P+ F+ GLQ L A ST EAELVA+A     ++F  NMM ELGF + F+ + VY DN +TLH +GNR FS R K+I LR+ F++EL+ +GK +IH+V TE  LAD+GTKH  K
Sbjct: 1280 PGFEVKDKDGGDMVMKLNKSLYGLAQSPGNWFNTIDPVLVEIGFVALKSDPCVYLYDHNGAKIYLTLYVDDLLLAGNDSDAISMVKGKLQKRFKMTDLGEASLVLGMEIRRDREANTLTISQEAYCKSILERFGISGSKPTSTPGYGSEISNIQPEDTLLDEKETRKYQGIVGSLMYIAQVLRYDIMYATGQLARPMAKPSKVHMVAAKHTLRYLAGTIDFSITYKKGGFKLATFSDSNWANNPDNGKSTSSYLTVLANAPMSFRSGLQGLTAMSTMEAELVASALAMNEAVFFSNMMTELGFGKEFAQLPVYCDNTATLHALGNRSFSSRTKHIALRFFFIRELVTEGKISIHYVPTEDNLADIGTKHFNK 1651          
BLAST of mRNA_F-serratus_M_contig1375.2735.1 vs. uniprot
Match: A0A6H5L6R7_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6R7_9PHAE)

HSP 1 Score: 254 bits (649), Expect = 2.990e-73
Identity = 146/346 (42.20%), Postives = 205/346 (59.25%), Query Frame = 3
Query:  336 PGYETYEKSGVQFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCVYLLCKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYADDILERDVMPNCNVAFTPGVGPKIYFDQPADRLLDEQRKPRR-------------SRYDIFYAINQLARAIFKPSKAHMGAAKHVLRYLTGCVNFPITYRRGGFTLMAYTDANKRGHLGNGRLTSSYIMMLANGPIIFKVGLQSLIAQSTREAELVATATTTKGSLFCRNMMMELGFTEGFSSVHVYIDNISTLHVVGNRRFSPRAKYIVLRYVFVQELMKKGKATIHFVKTEQQLADLGTKHLKK 1334
            PGYE      +Q VMK+ KS     QSP++W  T+D  L  IGF  LKSD CVY+       ++      Y+ D      +++ R    G       +Y   IL+R  M +C    T G GP++   QP + LL+ + K R              +RYDI Y  +Q ARA+  PSK HMGAAKH+LRYL+G  +F ITY+RGGF L A ++AN   +  NG+  SSYIMM++  P   K GLQSL A ST EAELVA+A   K  +FC NMM ELGF   FSS  ++ID+ +TL+V+GN+ FS   K++ LR+ ++++++K+G+ +IH++ TE  LAD+GT++L K
Sbjct:  431 PGYEAKNMEELQLVMKLEKSLDGLAQSPQDWLKTIDSSLVEIGFFPLKSDTCVYIYDHNNTVVV---LTLYVDD------LLIIR----GGAHHQPGNYTTSILDRFGMGSCKPLSTAGFGPELSVKQPEETLLNAEGKQRYQAIIGSVMYLAQVTRYDIMYCASQFARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTASSNANGGHNTDNGKSMSSYIMMMSTAPASLKSGLQSLTAMSTVEAELVASALAMKEVIFCTNMMKELGFGSEFSSAPLFIDSTATLNVIGNQTFSGHTKHMALRFFYIRKIVKEGRISIHYIPTEDNLADIGTEYLNK 763          
BLAST of mRNA_F-serratus_M_contig1375.2735.1 vs. uniprot
Match: A0A6H5J6N1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6N1_9PHAE)

HSP 1 Score: 234 bits (597), Expect = 3.890e-68
Identity = 133/312 (42.63%), Postives = 185/312 (59.29%), Query Frame = 3
Query:  423 NWFGTMDDHLSNIGFRSLKSDPCVYLLCK--------------------------LKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYADDILERDVMPNCNVAFTPGVGPKIYFDQPADRLLDEQRKPRRSRYDIFYAINQLARAIFKPSKAHMGAAKHVLRYLTGCVNFPITYRRGGFTLMAYTDANKRGHLGNGRLTSSYIMMLANGPIIFKVGLQSLIAQSTREAELVATATTTKGSLFCRNMMMELGFTEGFSSVHVYIDNISTLHVVGNRRFSPRAKYIVLRYVFVQELMKKGKATIH 1280
            +W  T+D  L  +G   LKSD CVY+  +                          +K +LM++F+M+ LG+ S VLGM VTRD E+G +TI Q DY   IL R  M  C     P VG ++  +QP + +L++++             +QLAR + K +KAHMGAAKH+LR   G  +F ITY+RGGF L A++DAN   +  N R TSSY++M++  P+ FK GLQ L   ST EAEL+A A T K ++FC NMM ELGF + F  V +YI+N +TLHV+GN+ +S R K+I L +  V+EL+K+G  TIH
Sbjct:  203 DWEKTIDLKLIELGCNPLKSDSCVYIYKRNHTIVIITLYVDDLVVIGGNIEVIEAIKTKLMEQFQMSVLGNVSLVLGMQVTRDGEHGTLTITQADYTRSILARFGMEECKPTSIPSVGSELSTEQPTETVLNKEKTQ-----------SQLARVMSKAAKAHMGAAKHLLR---GTQDFCITYKRGGFKLTAFSDANWESNPDNARSTSSYMIMMSKAPVSFKTGLQDLTVMSTMEAELLAAALTMKEAVFCSNMMTELGFGQQFGQVPLYINNTATLHVIGNQAYSSRTKHIALLFFCVRELVKEGAITIH 500          
BLAST of mRNA_F-serratus_M_contig1375.2735.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 233 bits (593), Expect = 1.650e-65
Identity = 139/373 (37.27%), Postives = 202/373 (54.16%), Query Frame = 3
Query:  336 PGYETYEKS-GVQFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCVYL--------------------------LCKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYADDILERDVMPNCNVAFTPGVGPKIYFDQPADRLLDEQRKPRR-------------SRYDIFYAINQLARAIFKPSKAHMGAAKHVLRYLTGCVNFPITYRRGGFTLMAYTDANKRGHLGNGRLTSSYIMMLANGPIIFKVGLQSLIAQSTREAELVATATTTKGSLFCRNMMMELGFTEGFSSVHVYIDNISTLHVVGNRRFSPRAKYIVLRYVFVQELMKKGKATIHFVKTEQQLADLGTKHLKK 1334
            PG E  + + G   V K+ KS Y   QSP  W   ++D L   G++  +SDPCVY+                          + + KK+LMD F+MT +G+  +V+G+ V RD E+G + I Q  YA DIL+R  M   N   TPG G ++  +QP D+LL  + K R              +RYD+ YA++QL RA   P++ HM AAKH+LRYL G  + PI Y++G F L  +TD++   +  NGR T+ Y+  L  G I +    Q+L AQ+T EAEL A + + + +++  N M E+GF + F SV +  D+   L V  N  FS R K+I LR+ F++EL K  + T+H   +   LAD+ TKHL K
Sbjct:  348 PGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPK 719          
BLAST of mRNA_F-serratus_M_contig1375.2735.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 222 bits (566), Expect = 1.870e-60
Identity = 120/247 (48.58%), Postives = 165/247 (66.80%), Query Frame = 3
Query:  594 QENGMITIDQKDYADDILERDVMPNCNVAFTPGVGPKIYFDQPADRLLDEQRKPRRSRYDIFYAINQLARAIFKPSKAHMGAAKHVLRYLTGCVNFPITYRRGGFTLMAYTDANKRGHLGNGRLTSSYIMMLANGPIIFKVGLQSLIAQSTREAELVATATTTKGSLFCRNMMMELGFTEGFSSVHVYIDNISTLHVVGNRRFSPRAKYIVLRYVFVQELMKKGKATIHFVKTEQQLADLGTKHLKK 1334
            +E+G +T  Q++Y + IL+R  M +     T G GP++     +   L +      +RYDI Y  +QLARA+  PSK HMGAAKH+LRYL+G  +F ITY+RGGF L A +DAN   +  N +  SSYIMM++  P+ FK GLQSL A ST EAELVA A   K ++FC NMM ELGF   F S  +YI N +TLHV+GN+ FS R K++ LR+ +++E++K+G+ +IH++ TE  LAD+GTKHL K
Sbjct:  435 EEDGELTNSQENYPNSILDRFGMGSWKPLSTAGFGPELSAIIGSVIYLAQI-----TRYDIMYCASQLARAMSNPSKIHMGAAKHLLRYLSGSRDFSITYKRGGFDLTALSDANWGNNPDNRKSMSSYIMMMSKAPVSFKFGLQSLTAMSTLEAELVAAALAMKETIFCTNMMKELGFGSEFRSAPLYI-NTATLHVIGNQTFSGRTKHVALRFFYIREIVKEGRISIHYIPTEDNLADIGTKHLNK 675          
BLAST of mRNA_F-serratus_M_contig1375.2735.1 vs. uniprot
Match: A0A6H5KHG5_9PHAE (Uncharacterized protein n=11 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHG5_9PHAE)

HSP 1 Score: 209 bits (533), Expect = 1.080e-55
Identity = 126/344 (36.63%), Postives = 184/344 (53.49%), Query Frame = 3
Query:  336 PGYETYEKS-GVQFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCVYL--------------------------LCKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYADDILERDVMPNCNVAFTPGVGPKIYFDQPADRLLDEQRKPRR-------------SRYDIFYAINQLARAIFKPSKAHMGAAKHVLRYLTGCVNFPITYRRGGFTLMAYTDANKRGHLGNGRLTSSYIMMLANGPIIFKVGLQSLIAQSTREAELVATATTTKGSLFCRNMMMELGFTEGFSSVHVYIDNISTLHVVGNRRFSPRAKYIVLRYVFVQ 1247
            PG E  + + G   V K+ KS Y   QSP  W   ++D L   G++  +SDPCVY+                          +   KK+LMD F+MT +G+  +V+G+ V RD E+G + I Q  YA DIL+R  M   N   TPG G ++  +QP D+LL  + K R              +RYD+ YA++QL RA   P++ HM AAKH+LRYL G  + PI Y++G F L  +TD++   +  NGR T+ Y+  L  G I +    Q+L AQ+T EAEL A + + + +++  N M E+GF + F SV +  D+   L V  N  FS R K+I LR+ F++
Sbjct: 1127 PGDEERDPTTGEMMVYKLEKSLYGLSQSPSLWNDAINDRLIIFGWQRTRSDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSSKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGAELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGF-KTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLR 1469          
BLAST of mRNA_F-serratus_M_contig1375.2735.1 vs. uniprot
Match: A0A6H5KL30_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL30_9PHAE)

HSP 1 Score: 208 bits (529), Expect = 3.300e-55
Identity = 134/377 (35.54%), Postives = 181/377 (48.01%), Query Frame = 3
Query:  321 LRQDGPGYETYEKSGVQFVMKVRKSHYDF*QSPKNWFGTMDDHLSNIGFRSLKSDPCVYL--------------------------LCKLKKQLMDRFKMTYLGDASKVLGMMVTRDQENGMITIDQKDYADDILERDVMPNCNVAFTPGVGPKIYFDQPADRLLDEQRKPRRS-------------RYDIFYAINQLARAIFKPSKAHMGAAKHVLRYLTGCVNFPITYRRGGFTLMAYTDANKRGHLGNGRLTSSYIMMLANGPIIFKVGLQSLIAQSTREAELVATATTTKGSLFCRNMMMELGFTEGFSSVHVYIDNISTLHVVGNRRFSPRAKYIVLRYVFVQELMKKGKATIHFVKTEQQLADLGTKHLKK 1334
            L +  PG+E   K G   VM+++KS Y   QSP NWF T+D  L  IGF  L+SD CVYL                          +  +K +L  R KMT +G+   VLGM + RD+  G +T  Q+ Y+  ILER  M       TPG G ++   QP D LL E+   R               RYDI YA  QLAR + KPSK HM AAKH LRY+ G                  TD   R                                  T E +L+A+    K ++FC NM+ ELGF + F+ V +Y DN +TLH +GNR FS   K I LR+++++EL+ +G+ +IH++ T+  +AD+GTKHL K
Sbjct:  882 LVEQPPGFEVNGKDGGDLVMQLQKSLYGLAQSPSNWFHTIDPFLVEIGFVPLQSDTCVYLYDHDDVQVFLTLYVDDLLLAGNNANVMLMIKNKLKQRSKMTDMGEVKLVLGMEIKRDRNQGTLTTSQEAYSKSILERFGMSERKPTSTPGYGSELSNKQPEDTLLGEEETRRYQGIMGCLMYIAQVLRYDIMYATGQLARPMTKPSKIHMVAAKHTLRYVAGT-----------------TDLRTR----------------------------------TTE-KLIASVLAMKEAVFCSNMVSELGFGKEFAQVPLYCDNTATLHALGNRSFSSSTKRIALRFLYIRELVSEGRMSIHYIPTDSNIADIGTKHLNK 1206          
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1375.2735.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L5U2_9PHAE1.400e-9947.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JME8_9PHAE1.190e-9545.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KNH5_9PHAE1.100e-9147.78Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KJH6_9PHAE4.240e-9146.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6R7_9PHAE2.990e-7342.20Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5J6N1_9PHAE3.890e-6842.63Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF46_9PHAE1.650e-6537.27Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KBU1_9PHAE1.870e-6048.58CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KHG5_9PHAE1.080e-5536.63Uncharacterized protein n=11 Tax=Ectocarpus sp. CC... [more]
A0A6H5KL30_9PHAE3.300e-5535.54Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1375contigF-serratus_M_contig1375:136575..137985 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score140.6
Seed ortholog evalue1.2e-30
Seed eggNOG ortholog35725.K2R9C2
Hectar predicted targeting categoryother localisation
EggNOG free text desc.retrotransposon
EggNOG OGs38DPC@33154,3NUZ7@4751,3QNZW@4890,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelAscomycota
Best eggNOG OGNA|NA|NA
Exons2
Model size1334
Cds size897
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1375.2735.1prot_F-serratus_M_contig1375.2735.1Fucus serratus malepolypeptideF-serratus_M_contig1375 137012..137985 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929354.6709135-UTR-F-serratus_M_contig1375:136574..1370111622929354.6709135-UTR-F-serratus_M_contig1375:136574..137011Fucus serratus maleUTRF-serratus_M_contig1375 136575..137011 +
1690962812.9795206-UTR-F-serratus_M_contig1375:136574..1370111690962812.9795206-UTR-F-serratus_M_contig1375:136574..137011Fucus serratus maleUTRF-serratus_M_contig1375 136575..137011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929354.6884727-CDS-F-serratus_M_contig1375:137011..1370711622929354.6884727-CDS-F-serratus_M_contig1375:137011..137071Fucus serratus maleCDSF-serratus_M_contig1375 137012..137071 +
1690962812.9914057-CDS-F-serratus_M_contig1375:137011..1370711690962812.9914057-CDS-F-serratus_M_contig1375:137011..137071Fucus serratus maleCDSF-serratus_M_contig1375 137012..137071 +
1622929354.7044115-CDS-F-serratus_M_contig1375:137148..1379851622929354.7044115-CDS-F-serratus_M_contig1375:137148..137985Fucus serratus maleCDSF-serratus_M_contig1375 137149..137985 +
1690962813.0006368-CDS-F-serratus_M_contig1375:137148..1379851690962813.0006368-CDS-F-serratus_M_contig1375:137148..137985Fucus serratus maleCDSF-serratus_M_contig1375 137149..137985 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1375.2735.1

>prot_F-serratus_M_contig1375.2735.1 ID=prot_F-serratus_M_contig1375.2735.1|Name=mRNA_F-serratus_M_contig1375.2735.1|organism=Fucus serratus male|type=polypeptide|length=299bp
MDDHLSNIGFRSLKSDPCVYLLCKLKKQLMDRFKMTYLGDASKVLGMMVT
RDQENGMITIDQKDYADDILERDVMPNCNVAFTPGVGPKIYFDQPADRLL
DEQRKPRRSRYDIFYAINQLARAIFKPSKAHMGAAKHVLRYLTGCVNFPI
TYRRGGFTLMAYTDANKRGHLGNGRLTSSYIMMLANGPIIFKVGLQSLIA
QSTREAELVATATTTKGSLFCRNMMMELGFTEGFSSVHVYIDNISTLHVV
GNRRFSPRAKYIVLRYVFVQELMKKGKATIHFVKTEQQLADLGTKHLKK
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mRNA from alignment at F-serratus_M_contig1375:136575..137985+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1375.2735.1 ID=mRNA_F-serratus_M_contig1375.2735.1|Name=mRNA_F-serratus_M_contig1375.2735.1|organism=Fucus serratus male|type=mRNA|length=1411bp|location=Sequence derived from alignment at F-serratus_M_contig1375:136575..137985+ (Fucus serratus male)
TGGGAGGCGGCGGTAGACAAGGACATCGCCAGCGTCAAGAAGAACGGTGT CTACAAACTGGTACCTGCGTCCTCCGTCTCTGCTGGACAAAAGGTGGTTG GCACACGCTGGGTCAACAAGATCAAGGCGGACGACCTCCTCAAACGTCGT ATGGTATTGTTGGAATGGACGGAGGTACCCGGGATCGACTGCGGCGGCAC CTTCGCACCTGTCTATAGACTGCAAAGCATCCGCATGATGCTGGGCATTG CGGCCGAGCTCGACTACGAGGTGCTGGACGTGCAAATAGCGTTCCTCAAC GCTGATGTCGACGAGGAGGTCTACGTCAAGATGGTCCCGGCTACGAGACA TACGAAAAGTCTGGAGTTCAATTCGTGATGAAAGTCAGGAAGAGTCATTA CGATTTTTGACAGAGCCCAAAGAACTGGTTCGGCACCATGGACGATCATC TCTCGAACATCGGGTTCCGCTCGCTCAAGTCGGATCCGTGCGTCTACGTG TTCGACGTCAAGACCGGCACTGCCATCTGACACTCTATGTGGATGACATT GTTCTGCTTGGCAACAACAAGCAGCTCCTCTGCAAGCTGAAGAAGCAACT AATGGACCGTTTCAAGATGACGTACCTCGGGGACGCGTCGAAGGTGCTCG GCATGATGGTCACCCGGGACCAAGAAAACGGGATGATCACTATCGACCAA AAGGACTACGCGGATGATATTCTCGAGCGCGATGTCATGCCAAACTGCAA TGTCGCGTTTACGCCGGGCGTCGGACCAAAGATCTACTTCGACCAGCCAG CAGACAGGCTGTTGGACGAACAAAGAAAACCGCGCAGGTCGCGGTATGAC ATCTTCTACGCGATCAATCAGCTGGCGAGAGCAATATTCAAGCCTTCGAA AGCTCACATGGGGGCGGCCAAACACGTACTCCGGTACTTGACCGGGTGCG TGAATTTCCCGATCACCTACAGGCGAGGTGGCTTTACGCTAATGGCTTAC ACTGACGCTAACAAGCGAGGGCACCTCGGCAACGGTAGGTTAACCTCGTC GTACATCATGATGCTCGCCAACGGCCCGATCATCTTCAAAGTGGGACTCC AGAGTCTAATCGCTCAATCGACTAGGGAGGCGGAGCTCGTTGCAACTGCC ACCACGACGAAGGGGTCACTCTTCTGCAGAAACATGATGATGGAGTTGGG TTTCACGGAGGGATTTTCGAGCGTTCATGTCTACATCGACAACATATCGA CGTTGCACGTGGTGGGAAACAGGCGTTTTAGTCCAAGGGCGAAGTACATC GTCCTCAGATACGTTTTTGTTCAAGAGCTAATGAAGAAAGGAAAGGCCAC CATCCATTTCGTCAAGACGGAGCAACAACTCGCCGATTTGGGAACGAAAC ATCTAAAAAAA
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Coding sequence (CDS) from alignment at F-serratus_M_contig1375:136575..137985+

>mRNA_F-serratus_M_contig1375.2735.1 ID=mRNA_F-serratus_M_contig1375.2735.1|Name=mRNA_F-serratus_M_contig1375.2735.1|organism=Fucus serratus male|type=CDS|length=1794bp|location=Sequence derived from alignment at F-serratus_M_contig1375:136575..137985+ (Fucus serratus male)
ATGGACGATCATCTCTCGAACATCGGGTTCCGCTCGCTCAAGTCGGATCC
GTGCGTCTACATGGACGATCATCTCTCGAACATCGGGTTCCGCTCGCTCA
AGTCGGATCCGTGCGTCTACCTCCTCTGCAAGCTGAAGAAGCAACTAATG
GACCGTTTCAAGATGACGTACCTCGGGGACGCGTCGAAGGTGCTCGGCAT
GATGGTCACCCGGGACCAAGAAAACGGGATGATCACTATCGACCAAAAGG
ACTACGCGGATGATATTCTCGAGCGCGATGTCATGCCAAACTGCAATGTC
GCGTTTACGCCGGGCGTCGGACCAAAGATCTACTTCGACCAGCCAGCAGA
CAGGCTGTTGGACGAACAAAGAAAACCGCGCAGGTCGCGGTATGACATCT
TCTACGCGATCAATCAGCTGGCGAGAGCAATATTCAAGCCTTCGAAAGCT
CACATGGGGGCGGCCAAACACGTACTCCGGTACTTGACCGGGTGCGTGAA
TTTCCCGATCACCTACAGGCGAGGTGGCTTTACGCTAATGGCTTACACTG
ACGCTAACAAGCGAGGGCACCTCGGCAACGGTAGGTTAACCTCGTCGTAC
ATCATGATGCTCGCCAACGGCCCGATCATCTTCAAAGTGGGACTCCAGAG
TCTAATCGCTCAATCGACTAGGGAGGCGGAGCTCGTTGCAACTGCCACCA
CGACGAAGGGGTCACTCTTCTGCAGAAACATGATGATGGAGTTGGGTTTC
ACGGAGGGATTTTCGAGCGTTCATGTCTACATCGACAACATATCGACGTT
GCACGTGGTGGGAAACAGGCGTTTTAGTCCAAGGGCGAAGTACATCGTCC
TCAGATACGTTTTTGTTCAAGAGCTAATGAAGAAAGGAAAGGCCACCATC
CATTTCGTCAAGACGGAGCAACAACTCGCCGATTTGGGAACGAAACATCT
AAAAAAACTCCTCTGCAAGCTGAAGAAGCAACTAATGGACCGTTTCAAGA
TGACGTACCTCGGGGACGCGTCGAAGGTGCTCGGCATGATGGTCACCCGG
GACCAAGAAAACGGGATGATCACTATCGACCAAAAGGACTACGCGGATGA
TATTCTCGAGCGCGATGTCATGCCAAACTGCAATGTCGCGTTTACGCCGG
GCGTCGGACCAAAGATCTACTTCGACCAGCCAGCAGACAGGCTGTTGGAC
GAACAAAGAAAACCGCGCAGGTCGCGGTATGACATCTTCTACGCGATCAA
TCAGCTGGCGAGAGCAATATTCAAGCCTTCGAAAGCTCACATGGGGGCGG
CCAAACACGTACTCCGGTACTTGACCGGGTGCGTGAATTTCCCGATCACC
TACAGGCGAGGTGGCTTTACGCTAATGGCTTACACTGACGCTAACAAGCG
AGGGCACCTCGGCAACGGTAGGTTAACCTCGTCGTACATCATGATGCTCG
CCAACGGCCCGATCATCTTCAAAGTGGGACTCCAGAGTCTAATCGCTCAA
TCGACTAGGGAGGCGGAGCTCGTTGCAACTGCCACCACGACGAAGGGGTC
ACTCTTCTGCAGAAACATGATGATGGAGTTGGGTTTCACGGAGGGATTTT
CGAGCGTTCATGTCTACATCGACAACATATCGACGTTGCACGTGGTGGGA
AACAGGCGTTTTAGTCCAAGGGCGAAGTACATCGTCCTCAGATACGTTTT
TGTTCAAGAGCTAATGAAGAAAGGAAAGGCCACCATCCATTTCGTCAAGA
CGGAGCAACAACTCGCCGATTTGGGAACGAAACATCTAAAAAAA
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