mRNA_F-serratus_M_contig1374.2734.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig1374.2734.1
Unique NamemRNA_F-serratus_M_contig1374.2734.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig1374.2734.1 vs. uniprot
Match: A0A6H5K038_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K038_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.330e-32
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 VEAAGQVYNQTNEFVYLGGNINQNADLSIEVDRRVRNAWCSFRKYTLELYDRPSASLELKIRMLRAEVLETMLYGCVTWSPRACHYDTLRRAYHRFLTRCI 303
            +EAAGQ Y QT EF YLGG +N++ DL+ E++ R R AW   R+Y  EL+DRP A   LKIR+L+AE +E +LYGC+TWSP + HY TLR  +HR L R I
Sbjct:   65 IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVI 165
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BLAST of mRNA_F-serratus_M_contig1374.2734.1 vs. uniprot
Match: A0A6H5JAH7_9PHAE (Reverse transcriptase domain-containing protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAH7_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 9.000e-32
Identity = 56/101 (55.45%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 VEAAGQVYNQTNEFVYLGGNINQNADLSIEVDRRVRNAWCSFRKYTLELYDRPSASLELKIRMLRAEVLETMLYGCVTWSPRACHYDTLRRAYHRFLTRCI 303
            +EAAGQ Y QT EF YLGG +N++ DL+ E++ R R AW   R+Y  EL+DRP A   LKIR+L+AE +E +LYGC+TWSP + HY TLR  +HR L R I
Sbjct:   65 IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVI 165
[Close]
BLAST of mRNA_F-serratus_M_contig1374.2734.1 vs. uniprot
Match: A0A6H5LCI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCI9_9PHAE)

HSP 1 Score: 121 bits (303), Expect = 9.420e-32
Identity = 56/101 (55.45%), Postives = 73/101 (72.28%), Query Frame = 1 
Query:    1 VEAAGQVYNQTNEFVYLGGNINQNADLSIEVDRRVRNAWCSFRKYTLELYDRPSASLELKIRMLRAEVLETMLYGCVTWSPRACHYDTLRRAYHRFLTRCI 303
            +EAAGQ Y QT EF YLGG +N++ DL+ E++ R R AW   R+Y  EL+DRP+A   LKIR+L+AE +E +LYGC+TWSP + HY TLR  +HR L R I
Sbjct:  101 IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGWELFDRPNAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVI 201
[Close]
BLAST of mRNA_F-serratus_M_contig1374.2734.1 vs. uniprot
Match: A0A6H5KQ16_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ16_9PHAE)

HSP 1 Score: 120 bits (301), Expect = 1.050e-31
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 VEAAGQVYNQTNEFVYLGGNINQNADLSIEVDRRVRNAWCSFRKYTLELYDRPSASLELKIRMLRAEVLETMLYGCVTWSPRACHYDTLRRAYHRFLTRCI 303
            +EAAGQ Y QT EF YLGG +N++ DL+ E++ R R AW   R+Y  EL+DRP A   LKIR+L+AE +E +LYGC+TWSP + HY TLR  +HR L R +
Sbjct:   65 IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVV 165
[Close]
BLAST of mRNA_F-serratus_M_contig1374.2734.1 vs. uniprot
Match: A0A6H5KBT2_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBT2_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 1.210e-30
Identity = 57/101 (56.44%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 VEAAGQVYNQTNEFVYLGGNINQNADLSIEVDRRVRNAWCSFRKYTLELYDRPSASLELKIRMLRAEVLETMLYGCVTWSPRACHYDTLRRAYHRFLTRCI 303
            +EAAGQ Y QT EF YLGG +N++ DL+ E++ R R AW   R+Y  EL+DRP A   LKIR+LRAE +E +LYGC+TWSP + HY TLR  +HR L R I
Sbjct:  344 IEAAGQKYAQTTEFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLRAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVI 444
[Close]
BLAST of mRNA_F-serratus_M_contig1374.2734.1 vs. uniprot
Match: A0A6H5KZ04_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ04_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 1.780e-30
Identity = 55/101 (54.46%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 VEAAGQVYNQTNEFVYLGGNINQNADLSIEVDRRVRNAWCSFRKYTLELYDRPSASLELKIRMLRAEVLETMLYGCVTWSPRACHYDTLRRAYHRFLTRCI 303
            +EAAGQ Y QT EF YLGG +N++ DL+ E++ R R AW   R+Y  EL+ RP A   LKIR+L+AE +E +LYGC+TWSP + HY TLR  +HR L R I
Sbjct:  150 IEAAGQKYAQTTEFRYLGGLVNEHGDLTPEINYRSRGAWAYLRRYGRELFGRPKAPFRLKIRLLQAEAMEALLYGCMTWSPLSRHYQTLRSIHHRLLLRVI 250
[Close]
BLAST of mRNA_F-serratus_M_contig1374.2734.1 vs. uniprot
Match: A0A6H5JYZ4_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYZ4_9PHAE)

HSP 1 Score: 114 bits (286), Expect = 2.240e-30
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 1 
Query:    1 VEAAGQVYNQTNEFVYLGGNINQNADLSIEVDRRVRNAWCSFRKYTLELYDRPSASLELKIRMLRAEVLETMLYGCVTWSPRACHYDTLRRAYHRFLTRCI 303
            +EAAGQ Y QT EF YLGG +N+  DL+ E++ R + AW   ++Y  EL+DRP A   LK R+L+AE +E +LYGC+TWSPR  HY  L+  +HR L R I
Sbjct:   63 IEAAGQRYAQTTEFRYLGGLVNEQGDLTREINHRSKAAWACIKRYATELFDRPGAPFRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLLRVI 163
[Close]
BLAST of mRNA_F-serratus_M_contig1374.2734.1 vs. uniprot
Match: A0A6H5L6U6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6U6_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.310e-30
Identity = 56/101 (55.45%), Postives = 71/101 (70.30%), Query Frame = 1 
Query:    1 VEAAGQVYNQTNEFVYLGGNINQNADLSIEVDRRVRNAWCSFRKYTLELYDRPSASLELKIRMLRAEVLETMLYGCVTWSPRACHYDTLRRAYHRFLTRCI 303
            +EAAGQ Y QT EF YLGG +N++ DL+ E+  R R AW   R+Y  EL+DRP A   LKIR+L+AE +E +LYGC+TWSP + HY TLR  +HR L R I
Sbjct:   65 IEAAGQNYAQTTEFRYLGGLVNEHGDLTREISHRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVI 165
[Close]
BLAST of mRNA_F-serratus_M_contig1374.2734.1 vs. uniprot
Match: A0A6H5L5L8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L8_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 3.270e-30
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 1 
Query:    1 VEAAGQVYNQTNEFVYLGGNINQNADLSIEVDRRVRNAWCSFRKYTLELYDRPSASLELKIRMLRAEVLETMLYGCVTWSPRACHYDTLRRAYHRFLTRCI 303
            +EAAGQ Y QT +F YLGG +N++ DL+ E++ R R AW   R+Y  EL+DRP A   LKIR+L+AE +E +LYGC+TWSP + HY TLR  +HR L R I
Sbjct:   84 IEAAGQKYAQTTDFRYLGGLVNEHGDLTREINYRSRGAWACLRRYGRELFDRPQAPFRLKIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVI 184
[Close]
BLAST of mRNA_F-serratus_M_contig1374.2734.1 vs. uniprot
Match: A0A6H5JM10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM10_9PHAE)

HSP 1 Score: 117 bits (294), Expect = 3.310e-30
Identity = 55/101 (54.46%), Postives = 70/101 (69.31%), Query Frame = 1 
Query:    1 VEAAGQVYNQTNEFVYLGGNINQNADLSIEVDRRVRNAWCSFRKYTLELYDRPSASLELKIRMLRAEVLETMLYGCVTWSPRACHYDTLRRAYHRFLTRCI 303
            +EAAGQ Y QT EF YLGG +N+  DL+ E++ R R AW   R+Y LE +DRP A   L IR+L+AE +E +LYGC+TWSP + HY TLR  +HR L R I
Sbjct:  140 IEAAGQKYAQTTEFRYLGGLVNERGDLTQEINYRSRGAWSCLRRYGLEPFDRPKAPFRLNIRLLQAEAMEALLYGCMTWSPLSGHYQTLRSIHHRLLLRVI 240
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig1374.2734.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K038_9PHAE2.330e-3255.45Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JAH7_9PHAE9.000e-3255.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5LCI9_9PHAE9.420e-3255.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQ16_9PHAE1.050e-3154.46Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KBT2_9PHAE1.210e-3056.44Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KZ04_9PHAE1.780e-3054.46Reverse transcriptase domain-containing protein (F... [more]
A0A6H5JYZ4_9PHAE2.240e-3051.49Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L6U6_9PHAE2.310e-3055.45Reverse transcriptase domain-containing protein n=... [more]
A0A6H5L5L8_9PHAE3.270e-3054.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JM10_9PHAE3.310e-3054.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig1374contigF-serratus_M_contig1374:235657..235959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929354.6138327-CDS-F-serratus_M_contig1374:235656..2359591622929354.6138327-CDS-F-serratus_M_contig1374:235656..235959Fucus serratus maleCDSF-serratus_M_contig1374 235657..235959 +
1690962812.9672148-CDS-F-serratus_M_contig1374:235656..2359591690962812.9672148-CDS-F-serratus_M_contig1374:235656..235959Fucus serratus maleCDSF-serratus_M_contig1374 235657..235959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig1374.2734.1prot_F-serratus_M_contig1374.2734.1Fucus serratus malepolypeptideF-serratus_M_contig1374 235657..235959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig1374.2734.1

>prot_F-serratus_M_contig1374.2734.1 ID=prot_F-serratus_M_contig1374.2734.1|Name=mRNA_F-serratus_M_contig1374.2734.1|organism=Fucus serratus male|type=polypeptide|length=101bp
VEAAGQVYNQTNEFVYLGGNINQNADLSIEVDRRVRNAWCSFRKYTLELY
DRPSASLELKIRMLRAEVLETMLYGCVTWSPRACHYDTLRRAYHRFLTRC
I
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mRNA from alignment at F-serratus_M_contig1374:235657..235959+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig1374.2734.1 ID=mRNA_F-serratus_M_contig1374.2734.1|Name=mRNA_F-serratus_M_contig1374.2734.1|organism=Fucus serratus male|type=mRNA|length=303bp|location=Sequence derived from alignment at F-serratus_M_contig1374:235657..235959+ (Fucus serratus male)
GTAGAGGCAGCGGGCCAGGTGTACAATCAGACGAACGAGTTCGTATACCT
CGGAGGAAACATCAACCAAAATGCCGACCTGTCCATCGAGGTCGACCGGC
GCGTACGCAACGCATGGTGCAGCTTCCGGAAGTACACCCTCGAACTGTAC
GACCGACCGAGCGCCTCCCTGGAGCTCAAAATCCGGATGCTAAGAGCCGA
GGTACTCGAGACAATGCTGTATGGATGCGTCACGTGGAGCCCGCGCGCGT
GCCACTACGACACGCTGCGCCGAGCCTACCACAGGTTCTTGACTCGCTGC
ATC
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Coding sequence (CDS) from alignment at F-serratus_M_contig1374:235657..235959+

>mRNA_F-serratus_M_contig1374.2734.1 ID=mRNA_F-serratus_M_contig1374.2734.1|Name=mRNA_F-serratus_M_contig1374.2734.1|organism=Fucus serratus male|type=CDS|length=606bp|location=Sequence derived from alignment at F-serratus_M_contig1374:235657..235959+ (Fucus serratus male)
GTAGAGGCAGCGGGCCAGGTGTACAATCAGACGAACGAGTTCGTATACCT
CGGAGGAAACATCAACCAAAATGCCGACCTGTCCATCGAGGTCGACCGGC
GCGTACGCAACGCATGGTGCAGCTTCCGGAAGTACACCCTCGAACTGTAC
GACCGACCGAGCGCCTCCCTGGAGCTCAAAATCCGGATGCTAAGAGCCGA
GGTACTCGAGACAATGCTGTATGGATGCGTCACGTGGAGCCCGCGCGCGT
GCCACTACGACACGCTGCGCCGAGCCTACCACAGGTTCTTGACTCGCTGC
ATCGTAGAGGCAGCGGGCCAGGTGTACAATCAGACGAACGAGTTCGTATA
CCTCGGAGGAAACATCAACCAAAATGCCGACCTGTCCATCGAGGTCGACC
GGCGCGTACGCAACGCATGGTGCAGCTTCCGGAAGTACACCCTCGAACTG
TACGACCGACCGAGCGCCTCCCTGGAGCTCAAAATCCGGATGCTAAGAGC
CGAGGTACTCGAGACAATGCTGTATGGATGCGTCACGTGGAGCCCGCGCG
CGTGCCACTACGACACGCTGCGCCGAGCCTACCACAGGTTCTTGACTCGC
TGCATC
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