mRNA_F-serratus_M_contig137.2719.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig137.2719.1
Unique NamemRNA_F-serratus_M_contig137.2719.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
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BLAST of mRNA_F-serratus_M_contig137.2719.1 vs. uniprot
Match: D8LH60_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH60_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 3.630e-48
Identity = 85/107 (79.44%), Postives = 98/107 (91.59%), Query Frame = 1 
Query:    1 HAAEHERQRRIKIVEAMDREEHQERLTRRAWALSAMDEEQRRRAGQQFLLSIQGTNWFQETISSVDLDYEVVCPYSSLGCRHICLRTELEEHLAKNCRFIHEPDDSN 321
            HAAEHERQRR+KI+E MDREEH+ERL RRAWALSAMDEEQRRR  Q+FLLSIQGTNWFQ TIS++DLDYE+ CPYSSLGCRHICLRTEL++HLAK+C+F  EP+ S+
Sbjct:  108 HAAEHERQRRMKILEGMDREEHRERLARRAWALSAMDEEQRRRGSQEFLLSIQGTNWFQGTISTLDLDYEICCPYSSLGCRHICLRTELDKHLAKDCQFNKEPESSD 214
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BLAST of mRNA_F-serratus_M_contig137.2719.1 vs. uniprot
Match: A0A7S1U6N2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U6N2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 8.750e-18
Identity = 44/99 (44.44%), Postives = 58/99 (58.59%), Query Frame = 1 
Query:    1 HAAEHERQRRIKIVEAMDREEHQERLTRRAWALSAMDEEQRRRAGQQFLLSIQGTNWFQETISSVDLDYEVVCPYSSLGCRHICLRTELEEHLAKNCRF 297
            H  E ER RR++ ++ MDR   +E+  RR WAL A+ +EQ  R    FL  +  T WF   +SS D DYEV+CP+S LGC+  C R EL+ H    C F
Sbjct:    4 HVMELERDRRVRELKEMDRSAEEEQRQRRNWALRAVMQEQANRVQDTFLQEVMNTQWFDSILSSYDQDYEVMCPFSMLGCQFRCTRDELDAHFL-TCEF 101
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BLAST of mRNA_F-serratus_M_contig137.2719.1 vs. uniprot
Match: A0A7R9UCX2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UCX2_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.210e-12
Identity = 40/116 (34.48%), Postives = 65/116 (56.03%), Query Frame = 1 
Query:    1 HAAEHERQRRIKIVEAMDREEHQERLTRRAWALSAMDEEQRRRAGQQFLLSIQGTNWFQETISSVDLDYEVVCPYSSLGCRHICLRTELEEH--------LAKNCRFIHEPDDSNY 324
            H  E ER RR++ +E ++    +E+  RR+WA+  + +EQ  R  + FL  +  T WF   +S+ +  YEV+CPYS LGC+  C   EL++H        L+KN     +P+++ Y
Sbjct:  177 HVMELERDRRLQELEQIEERAEEEQQQRRSWAIRMVMQEQANRVQEMFLQEVVNTQWFDSILSTYEESYEVMCPYSMLGCQFRCKLEELDDHFLVCEFCDLSKNDLVRQDPEETAY 292
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig137.2719.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LH60_ECTSI3.630e-4879.44Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1U6N2_9STRA8.750e-1844.44Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7R9UCX2_9STRA2.210e-1234.48Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig137contigF-serratus_M_contig137:505406..506932 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue3.4e-42
Seed eggNOG ortholog2880.D8LH60
KEGG koko:K03514
KEGG Pathwayko03018,map03018
KEGG ModuleM00393
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA uridylyltransferase activity
EggNOG OGsCOG5260@1,KOG1906@2759
EC2.7.7.19
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03016,ko03019
Exons4
Model size449
Cds size447
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig137.2719.1prot_F-serratus_M_contig137.2719.1Fucus serratus malepolypeptideF-serratus_M_contig137 505406..506932 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929351.9833496-CDS-F-serratus_M_contig137:505405..5054411622929351.9833496-CDS-F-serratus_M_contig137:505405..505441Fucus serratus maleCDSF-serratus_M_contig137 505406..505441 +
1690962811.7432904-CDS-F-serratus_M_contig137:505405..5054411690962811.7432904-CDS-F-serratus_M_contig137:505405..505441Fucus serratus maleCDSF-serratus_M_contig137 505406..505441 +
1622929352.0040267-CDS-F-serratus_M_contig137:505893..5059981622929352.0040267-CDS-F-serratus_M_contig137:505893..505998Fucus serratus maleCDSF-serratus_M_contig137 505894..505998 +
1690962811.7577057-CDS-F-serratus_M_contig137:505893..5059981690962811.7577057-CDS-F-serratus_M_contig137:505893..505998Fucus serratus maleCDSF-serratus_M_contig137 505894..505998 +
1622929352.019625-CDS-F-serratus_M_contig137:506370..5065651622929352.019625-CDS-F-serratus_M_contig137:506370..506565Fucus serratus maleCDSF-serratus_M_contig137 506371..506565 +
1690962811.7671638-CDS-F-serratus_M_contig137:506370..5065651690962811.7671638-CDS-F-serratus_M_contig137:506370..506565Fucus serratus maleCDSF-serratus_M_contig137 506371..506565 +
1622929352.0341873-CDS-F-serratus_M_contig137:506821..5069321622929352.0341873-CDS-F-serratus_M_contig137:506821..506932Fucus serratus maleCDSF-serratus_M_contig137 506822..506932 +
1690962811.777101-CDS-F-serratus_M_contig137:506821..5069321690962811.777101-CDS-F-serratus_M_contig137:506821..506932Fucus serratus maleCDSF-serratus_M_contig137 506822..506932 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig137.2719.1

>prot_F-serratus_M_contig137.2719.1 ID=prot_F-serratus_M_contig137.2719.1|Name=mRNA_F-serratus_M_contig137.2719.1|organism=Fucus serratus male|type=polypeptide|length=149bp
HAAEHERQRRIKIVEAMDREEHQERLTRRAWALSAMDEEQRRRAGQQFLL
SIQGTNWFQETISSVDLDYEVVCPYSSLGCRHICLRTELEEHLAKNCRFI
HEPDDSNYSDTQVYASEYEVVCPNTILGCDHSCSRSSLAQHLDTCRFAG
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mRNA from alignment at F-serratus_M_contig137:505406..506932+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig137.2719.1 ID=mRNA_F-serratus_M_contig137.2719.1|Name=mRNA_F-serratus_M_contig137.2719.1|organism=Fucus serratus male|type=mRNA|length=1527bp|location=Sequence derived from alignment at F-serratus_M_contig137:505406..506932+ (Fucus serratus male)
CATGCGGCGGAGCACGAGAGACAGCGAAGGATAAAGGTACTATTGTATTG
TATAATATACACCACACTACCCTGGTATTTACAATCATTTACATAATGTT
ATCATTGACAAATATTAGTAACAGTAATATACTATTAATAGTAATATTAT
AGTAATAGTAAGCAGTCACACAACACGTATTAATAGTGAATGTTTTCGCC
TTTCGCCTTCTCTTGCAAACAAGTATTCCGTACTATAATTCTCTAATTCT
CCGCGCCCAGCGATGTCCGTAATGTCCGTAATGTTCGTATTGTTCATATT
AATAATACTAAACGTGTGTCTTTCTTATTTACCATAGTCGCAAAACTTTC
GAGGAACGTTACTGTACCTAAAGTAACAGCAGTACAACAGTGCTTGTGTA
GACCCAAATTCATTACTGTACCTGTATACATACAAGTGAAGTGAAATACA
AATCGAAGTAAAGTACGCTGTTTTTGTGACTTGAGAAGATCGTAGAGGCC
ATGGATCGCGAGGAGCACCAAGAACGTCTGACTCGCCGAGCGTGGGCTTT
GTCGGCCATGGACGAGGAGCAGCGGAGGAGAGCAGGACAACAGGTGAAGG
GGTGAATAGTGAATAGAAGCCGCCGAGACTAGACTTTCCCAGTACGGTAA
TGATCTATAGCGTCTATAACTTTGGTATCATGTCATTCTGGATGGATAAG
TACTATAATTGGTATTATTATCGGTGCAGTCATTTGCACCAATATGCACC
AACTCAACGTAAGATACAGGTTACACTTGCGGATGTCGGGGCCTTCGTCT
CTATAGCTCTATAGCTCTATAGCTCCCTCGAGGAACGCTGATGCGGTACT
TGTACATGTTACATAATGTTGGTATCAGCCTCGACATAATCAAGAAACTA
CTTTGCAGTACGATAGAATGCCTGCATAGCTATAACGAGGCAGCATCCCG
TCTTCCGTCTACCAGTTTTTACTTTCGATCCAGGGCACGAACTGGTTCCA
GGAGACAATTAGCTCCGTGGACTTGGACTACGAGGTGGTATGTCCCTACT
CGTCGCTAGGCTGTCGGCACATTTGTCTTCGGACAGAACTTGAAGAGCAC
CTGGCCAAGAACTGCCGCTTCATTCATGAGCCGGACGACTCCAACTATTC
CGACACACAGGTCACAGCCAATCTTGTCTAATATACTATTTTTATTGATA
ATGACACCGGTACCTTGGCATCTCTGAGGACGAATTAGAGACAGGGATAT
TCATGCTATGATATACCGTATCTAATTTACTAGACCGTTGACAATTTTCT
TTTTCCGATGAAATTATCGACCATTATCGAGCACTATCGACACTCCTACT
TCTCCAGTATTTTCCTATTTGCGGTGCTCACATTTTATACTAAATTCATC
ATCGATTTTTCTTCAGGTGTACGCCAGCGAATACGAAGTAGTGTGTCCCA
ATACAATCCTTGGTTGTGACCACAGCTGCTCAAGGAGCTCCCTGGCACAG
CACCTCGACACTTGCCGCTTTGCCGGT
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Coding sequence (CDS) from alignment at F-serratus_M_contig137:505406..506932+

>mRNA_F-serratus_M_contig137.2719.1 ID=mRNA_F-serratus_M_contig137.2719.1|Name=mRNA_F-serratus_M_contig137.2719.1|organism=Fucus serratus male|type=CDS|length=894bp|location=Sequence derived from alignment at F-serratus_M_contig137:505406..506932+ (Fucus serratus male)
CATGCGGCGGAGCACGAGAGACAGCGAAGGATAAAGCATGCGGCGGAGCA
CGAGAGACAGCGAAGGATAAAGATCGTAGAGGCCATGGATCGCGAGGAGC
ACCAAGAACGTCTGACTCGCCGAGCGTGGGCTTTGTCGGCCATGGACGAG
GAGCAGCGGAGGAGAGCAGGACAACAGATCGTAGAGGCCATGGATCGCGA
GGAGCACCAAGAACGTCTGACTCGCCGAGCGTGGGCTTTGTCGGCCATGG
ACGAGGAGCAGCGGAGGAGAGCAGGACAACAGTTTTTACTTTCGATCCAG
GGCACGAACTGGTTCCAGGAGACAATTAGCTCCGTGGACTTGGACTACGA
GGTGGTATGTCCCTACTCGTCGCTAGGCTGTCGGCACATTTGTCTTCGGA
CAGAACTTGAAGAGCACCTGGCCAAGAACTGCCGCTTCATTCATGAGCCG
GACGACTCCAACTATTCCGACACACAGTTTTTACTTTCGATCCAGGGCAC
GAACTGGTTCCAGGAGACAATTAGCTCCGTGGACTTGGACTACGAGGTGG
TATGTCCCTACTCGTCGCTAGGCTGTCGGCACATTTGTCTTCGGACAGAA
CTTGAAGAGCACCTGGCCAAGAACTGCCGCTTCATTCATGAGCCGGACGA
CTCCAACTATTCCGACACACAGGTGTACGCCAGCGAATACGAAGTAGTGT
GTCCCAATACAATCCTTGGTTGTGACCACAGCTGCTCAAGGAGCTCCCTG
GCACAGCACCTCGACACTTGCCGCTTTGCCGGTGTGTACGCCAGCGAATA
CGAAGTAGTGTGTCCCAATACAATCCTTGGTTGTGACCACAGCTGCTCAA
GGAGCTCCCTGGCACAGCACCTCGACACTTGCCGCTTTGCCGGT
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