mRNA_F-serratus_M_contig137.2706.1 (mRNA) Fucus serratus male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-serratus_M_contig137.2706.1
Unique NamemRNA_F-serratus_M_contig137.2706.1
TypemRNA
OrganismFucus serratus male (Fucus serratus male (Toothed wrack or serrated wrack))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-serratus_M_contig137.2706.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-serratus_M_contig137contigF-serratus_M_contig137:149994..150781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Fucus serratus MALE vs UniRef902022-09-19
OGS1.0 of Fucus serratus male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size397
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929347.5980616-CDS-F-serratus_M_contig137:149994..1500491622929347.5980616-CDS-F-serratus_M_contig137:149994..150049Fucus serratus maleCDSF-serratus_M_contig137 149995..150049 -
1690962809.4037569-CDS-F-serratus_M_contig137:149994..1500491690962809.4037569-CDS-F-serratus_M_contig137:149994..150049Fucus serratus maleCDSF-serratus_M_contig137 149995..150049 -
1622929347.616751-CDS-F-serratus_M_contig137:150440..1507811622929347.616751-CDS-F-serratus_M_contig137:150440..150781Fucus serratus maleCDSF-serratus_M_contig137 150441..150781 -
1690962809.4134634-CDS-F-serratus_M_contig137:150440..1507811690962809.4134634-CDS-F-serratus_M_contig137:150440..150781Fucus serratus maleCDSF-serratus_M_contig137 150441..150781 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-serratus_M_contig137.2706.1prot_F-serratus_M_contig137.2706.1Fucus serratus malepolypeptideF-serratus_M_contig137 149995..150781 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-serratus_M_contig137.2706.1

>prot_F-serratus_M_contig137.2706.1 ID=prot_F-serratus_M_contig137.2706.1|Name=mRNA_F-serratus_M_contig137.2706.1|organism=Fucus serratus male|type=polypeptide|length=132bp
GDSLAGVAEPSEGGHDSPSTTVPETSEGGTGGYRTAILGRGDCVQDSTSS
TAVPETSEVIASELCTAAPERSECDRSGTSQDLEERIEGVRGTSSTAAPD
LEDTVDGVNIKCMRSRWLREPALQAMMSSCTW
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mRNA from alignment at F-serratus_M_contig137:149994..150781-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-serratus_M_contig137.2706.1 ID=mRNA_F-serratus_M_contig137.2706.1|Name=mRNA_F-serratus_M_contig137.2706.1|organism=Fucus serratus male|type=mRNA|length=788bp|location=Sequence derived from alignment at F-serratus_M_contig137:149994..150781- (Fucus serratus male)
GGCGACTCCCTTGCAGGTGTGGCGGAGCCTAGCGAAGGGGGGCATGACAG
TCCCTCGACAACTGTACCCGAGACGAGCGAGGGAGGGACGGGCGGTTATC
GCACAGCGATACTTGGGCGGGGCGATTGTGTCCAAGACAGCACCTCCTCG
ACAGCGGTACCCGAGACGAGTGAGGTTATAGCCAGCGAGTTATGTACAGC
AGCGCCGGAGAGGAGCGAGTGTGATCGAAGCGGAACCTCGCAAGACTTAG
AAGAGCGCATCGAAGGGGTTAGAGGTACATCTTCTACAGCCGCACCAGAC
CTCGAAGATACTGTAGACGGTGTTAACATCAAATGCATGAGGTGAGCTCC
TGATCTTTACATGCGTGAAAATGTCGTGAGAACACACACATGCCTCTGTT
ATCCGCACGGCAGTCGTGTGCGGTGTCCGAATAAATATGTTGTATTCCGC
TATACAGCTGAAGCAAGCCATGGTTGTAAAGAGACAAATAGGCGTGTGCA
GGATACAGGCGAACCACGCCAAAGTTTGTGCATATTGTCTTTCGAGTGTT
TTTGTCAAACCGTGGTCTGTGAGTGTAGGTATTATAATCACGTATTTACC
TCAGTTCCTGCTTTCCGAAACAGACTATGGCTCTTTTATTATCGCCTGGA
ATATACTTCATGTTTTATACGAGCGGCCCTGAGACCGTATGGACCTCAAT
AGTATGGTGTTTGCGCGTGCCGCCTACTTTAGGTCACGGTGGCTGAGAGA
ACCGGCGTTACAGGCGATGATGTCGTCATGCACATGGG
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Coding sequence (CDS) from alignment at F-serratus_M_contig137:149994..150781-

>mRNA_F-serratus_M_contig137.2706.1 ID=mRNA_F-serratus_M_contig137.2706.1|Name=mRNA_F-serratus_M_contig137.2706.1|organism=Fucus serratus male|type=CDS|length=792bp|location=Sequence derived from alignment at F-serratus_M_contig137:149994..150781- (Fucus serratus male)
GGCGACTCCCTTGCAGGTGTGGCGGAGCCTAGCGAAGGGGGGCATGACAG
TCCCTCGACAACTGTACCCGAGACGAGCGAGGGAGGGACGGGCGGTTATC
GCACAGCGATACTTGGGCGGGGCGATTGTGTCCAAGACAGCACCTCCTCG
ACAGCGGTACCCGAGACGAGTGAGGTTATAGCCAGCGAGTTATGTACAGC
AGCGCCGGAGAGGAGCGAGTGTGATCGAAGCGGAACCTCGCAAGACTTAG
AAGAGCGCATCGAAGGGGTTAGAGGTACATCTTCTACAGCCGCACCAGAC
CTCGAAGATACTGTAGACGGTGTTAACATCAAATGCATGAGGGCGACTCC
CTTGCAGGTGTGGCGGAGCCTAGCGAAGGGGGGCATGACAGTCCCTCGAC
AACTGTACCCGAGACGAGCGAGGGAGGGACGGGCGGTTATCGCACAGCGA
TACTTGGGCGGGGCGATTGTGTCCAAGACAGCACCTCCTCGACAGCGGTA
CCCGAGACGAGTGAGGTTATAGCCAGCGAGTTATGTACAGCAGCGCCGGA
GAGGAGCGAGTGTGATCGAAGCGGAACCTCGCAAGACTTAGAAGAGCGCA
TCGAAGGGGTTAGAGGTACATCTTCTACAGCCGCACCAGACCTCGAAGAT
ACTGTAGACGGTGTTAACATCAAATGCATGAGGTCACGGTGGCTGAGAGA
ACCGGCGTTACAGGCGATGATGTCGTCATGCACATGGGTCACGGTGGCTG
AGAGAACCGGCGTTACAGGCGATGATGTCGTCATGCACATGG
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